RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 RGPD5Q99666 1765 aa14.31□□□□□ -0.12
VPS28-204ENST00000526054 OVOS2A0A0G2JMS6 1433 aa14.31□□□□□ -0.12
VPS28-204ENST00000526054 OVOS2A0A0J9YW53 1432 aa14.31□□□□□ -0.12
VPS28-204ENST00000526054 OVOS2Q6IE36 1432 aa14.31□□□□□ -0.12
VPS28-204ENST00000526054 RGPD3A6NKT7 1758 aaPredicted RBP14.3□□□□□ -0.12
VPS28-204ENST00000526054 RGPD4Q7Z3J3 1758 aa14.3□□□□□ -0.12
VPS28-204ENST00000526054 SBF2Q86WG5 1849 aa14.29□□□□□ -0.12
VPS28-204ENST00000526054 NFAT5O94916 1531 aa14.29□□□□□ -0.12
VPS28-204ENST00000526054 ABCC6O95255 1503 aa14.28□□□□□ -0.12
VPS28-204ENST00000526054 TOM1L2Q6ZVM7 507 aa14.28□□□□□ -0.12
VPS28-204ENST00000526054 USP54Q70EL1 1684 aa14.28□□□□□ -0.12
VPS28-204ENST00000526054 TTC21BQ7Z4L5 1316 aa14.28□□□□□ -0.12
VPS28-204ENST00000526054 TTC21AQ8NDW8 1320 aa14.28□□□□□ -0.12
VPS28-204ENST00000526054 ZNF692Q9BU19 519 aaPredicted RBP14.28□□□□□ -0.12
VPS28-204ENST00000526054 SBNO2Q9Y2G9 1366 aa14.28□□□□□ -0.12
VPS28-204ENST00000526054 KTN1Q86UP2 1357 aaKnown RBP14.27□□□□□ -0.12
VPS28-204ENST00000526054 WDR17Q8IZU2 1322 aa14.27□□□□□ -0.12
VPS28-204ENST00000526054 C11orf95C9JLR9 678 aaPredicted RBP14.27□□□□□ -0.13
VPS28-204ENST00000526054 SOX12O15370 315 aa14.27□□□□□ -0.13
VPS28-204ENST00000526054 KCNH5Q8NCM2 988 aa14.27□□□□□ -0.13
VPS28-204ENST00000526054 DDB1Q16531 1140 aa14.26□□□□□ -0.13
VPS28-204ENST00000526054 LTN1O94822 1766 aa14.26□□□□□ -0.13
VPS28-204ENST00000526054 AXIN2Q9Y2T1 843 aa14.25□□□□□ -0.13
VPS28-204ENST00000526054 CSB-PGBD3P0DP91 1061 aa14.24□□□□□ -0.13
VPS28-204ENST00000526054 NBPF14Q5TI25 921 aa14.24□□□□□ -0.13
VPS28-204ENST00000526054 ARHGEF25Q86VW2 580 aa14.24□□□□□ -0.13
VPS28-204ENST00000526054 USP47Q96K76 1375 aa14.23□□□□□ -0.13
VPS28-204ENST00000526054 CDCA7Q9BWT1 371 aaPredicted RBP14.23□□□□□ -0.13
VPS28-204ENST00000526054 CD163L1Q9NR16 1453 aa14.23□□□□□ -0.13
VPS28-204ENST00000526054 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.21□□□□□ -0.13
VPS28-204ENST00000526054 CARD10Q9BWT7 1032 aa14.21□□□□□ -0.13
VPS28-204ENST00000526054 TNS2Q63HR2 1409 aa14.21□□□□□ -0.13
VPS28-204ENST00000526054 USP31Q70CQ4 1352 aa14.21□□□□□ -0.14
VPS28-204ENST00000526054 CCDC7Q96M83 1385 aa14.21□□□□□ -0.14
VPS28-204ENST00000526054 BCL9O00512 1426 aa14.2□□□□□ -0.14
VPS28-204ENST00000526054 EDC4Q6P2E9 1401 aaKnown RBP14.19□□□□□ -0.14
VPS28-204ENST00000526054 NME9Q86XW9 330 aa14.19□□□□□ -0.14
VPS28-204ENST00000526054 MARCH10Q8NA82 808 aaPredicted RBP14.19□□□□□ -0.14
VPS28-204ENST00000526054 TMC1Q8TDI8 760 aa14.19□□□□□ -0.14
VPS28-204ENST00000526054 NHSQ6T4R5 1651 aa14.19□□□□□ -0.14
VPS28-204ENST00000526054 SLC24A1O60721 1099 aa14.18□□□□□ -0.14
VPS28-204ENST00000526054 HDGFL2Q7Z4V5 671 aaPredicted RBP14.18□□□□□ -0.14
VPS28-204ENST00000526054 BCL11BQ9C0K0 894 aaPredicted RBP14.18□□□□□ -0.14
VPS28-204ENST00000526054 CASZ1Q86V15 1759 aa14.18□□□□□ -0.14
VPS28-204ENST00000526054 A0A1W2PP64 1363 aa14.18□□□□□ -0.14
VPS28-204ENST00000526054 ST20-MTHFSA0A0A6YYL1 179 aa14.17□□□□□ -0.14
VPS28-204ENST00000526054 PLSCR1O15162 318 aa14.17□□□□□ -0.14
VPS28-204ENST00000526054 FAM208AQ9UK61 1670 aaKnown RBP14.17□□□□□ -0.14
VPS28-204ENST00000526054 ERBB3P21860 1342 aa14.16□□□□□ -0.14
VPS28-204ENST00000526054 PTF1AQ7RTS3 328 aa14.16□□□□□ -0.14
VPS28-204ENST00000526054 EXOC5O00471 708 aa14.15□□□□□ -0.14
VPS28-204ENST00000526054 SLC12A5Q9H2X9 1139 aa14.15□□□□□ -0.14
VPS28-204ENST00000526054 SPON1Q9HCB6 807 aa14.15□□□□□ -0.14
VPS28-204ENST00000526054 ANO8Q9HCE9 1232 aaPredicted RBP14.15□□□□□ -0.14
VPS28-204ENST00000526054 TERF2IPQ9NYB0 399 aa14.15□□□□□ -0.14
VPS28-204ENST00000526054 PPP1R1BQ9UD71 204 aaPredicted RBP14.15□□□□□ -0.14
VPS28-204ENST00000526054 NINLQ9Y2I6 1382 aa14.14□□□□□ -0.15
VPS28-204ENST00000526054 EIF4G2P78344 907 aaKnown RBP eCLIP14.14□□□□□ -0.15
VPS28-204ENST00000526054 NLRP2Q9NX02 1062 aa14.14□□□□□ -0.15
VPS28-204ENST00000526054 KCNQ2O43526 872 aa14.13□□□□□ -0.15
VPS28-204ENST00000526054 TESK2Q96S53 571 aa14.13□□□□□ -0.15
VPS28-204ENST00000526054 BTAF1O14981 1849 aa14.13□□□□□ -0.15
VPS28-204ENST00000526054 TMF1P82094 1093 aa14.12□□□□□ -0.15
VPS28-204ENST00000526054 ANKRD24Q8TF21 1146 aa14.12□□□□□ -0.15
VPS28-204ENST00000526054 PUS7Q96PZ0 661 aaKnown RBP14.12□□□□□ -0.15
VPS28-204ENST00000526054 MYOM1P52179 1685 aa14.11□□□□□ -0.15
VPS28-204ENST00000526054 IL2RBP14784 551 aa14.11□□□□□ -0.15
VPS28-204ENST00000526054 TXNRD1Q16881 649 aa14.1□□□□□ -0.15
VPS28-204ENST00000526054 CDCA8Q53HL2 280 aa14.1□□□□□ -0.15
VPS28-204ENST00000526054 PROM2Q8N271 834 aa14.1□□□□□ -0.15
VPS28-204ENST00000526054 PAPPAQ13219 1627 aa14.1□□□□□ -0.15
VPS28-204ENST00000526054 HSPA5P11021 654 aaKnown RBP14.09□□□□□ -0.15
VPS28-204ENST00000526054 STK32BQ9NY57 414 aa14.09□□□□□ -0.15
VPS28-204ENST00000526054 ACSBG1Q96GR2 724 aa14.08□□□□□ -0.16
VPS28-204ENST00000526054 DOT1LQ8TEK3 1739 aa14.07□□□□□ -0.16
VPS28-204ENST00000526054 RGPD2P0DJD1 1756 aa14.07□□□□□ -0.16
VPS28-204ENST00000526054 KAT6BQ8WYB5 2073 aa14.07□□□□□ -0.16
VPS28-204ENST00000526054 KIF20BQ96Q89 1820 aa14.07□□□□□ -0.16
VPS28-204ENST00000526054 ZEB1P37275 1124 aaPredicted RBP14.07□□□□□ -0.16
VPS28-204ENST00000526054 COG3Q96JB2 828 aa14.07□□□□□ -0.16
VPS28-204ENST00000526054 PDGFDQ9GZP0 370 aaPredicted RBP14.07□□□□□ -0.16
VPS28-204ENST00000526054 ANKRD36BQ8N2N9 1353 aa14.07□□□□□ -0.16
VPS28-204ENST00000526054 ZBTB7AO95365 584 aa14.06□□□□□ -0.16
VPS28-204ENST00000526054 SLC15A2Q16348 729 aa14.06□□□□□ -0.16
VPS28-204ENST00000526054 IP6K1Q92551 441 aa14.06□□□□□ -0.16
VPS28-204ENST00000526054 LTV1Q96GA3 475 aaPredicted RBP14.06□□□□□ -0.16
VPS28-204ENST00000526054 SHANK3Q9BYB0 1731 aa14.06□□□□□ -0.16
VPS28-204ENST00000526054 DCAF8L1A6NGE4 600 aa14.05□□□□□ -0.16
VPS28-204ENST00000526054 MAP3K19Q56UN5 1328 aa14.05□□□□□ -0.16
VPS28-204ENST00000526054 RTL1A6NKG5 1358 aa14.04□□□□□ -0.16
VPS28-204ENST00000526054 HOXC9P31274 260 aa14.03□□□□□ -0.16
VPS28-204ENST00000526054 AMPHP49418 695 aa14.03□□□□□ -0.16
VPS28-204ENST00000526054 QSER1Q2KHR3 1735 aa14.03□□□□□ -0.16
VPS28-204ENST00000526054 MEGF6O75095 1541 aa14.02□□□□□ -0.16
VPS28-204ENST00000526054 YY1P25490 414 aa14.02□□□□□ -0.17
VPS28-204ENST00000526054 PTGER2P43116 358 aa14.02□□□□□ -0.17
VPS28-204ENST00000526054 ATF5Q9Y2D1 282 aaPredicted RBP14.02□□□□□ -0.17
VPS28-204ENST00000526054 SMG6Q86US8 1419 aaKnown RBP14.01□□□□□ -0.17
VPS28-204ENST00000526054 DDX54Q8TDD1 881 aaKnown RBP14.01□□□□□ -0.17
VPS28-204ENST00000526054 MTFR1LQ9H019 292 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms