RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 OVOS2A0A0J9YW53 1432 aa23.19■■□□□ 1.3
HIF3A-208ENST00000524533 OVOS2Q6IE36 1432 aa23.19■■□□□ 1.3
HIF3A-208ENST00000524533 TOM1L2Q6ZVM7 507 aa23.19■■□□□ 1.3
HIF3A-208ENST00000524533 NFAT5O94916 1531 aa23.18■■□□□ 1.3
HIF3A-208ENST00000524533 KCNH5Q8NCM2 988 aa23.18■■□□□ 1.3
HIF3A-208ENST00000524533 WDR17Q8IZU2 1322 aa23.17■■□□□ 1.3
HIF3A-208ENST00000524533 USP54Q70EL1 1684 aa23.17■■□□□ 1.3
HIF3A-208ENST00000524533 SOX12O15370 315 aa23.16■■□□□ 1.3
HIF3A-208ENST00000524533 CARD11Q9BXL7 1154 aa23.16■■□□□ 1.3
HIF3A-208ENST00000524533 ABCC6O95255 1503 aa23.16■■□□□ 1.3
HIF3A-208ENST00000524533 TONSLQ96HA7 1378 aa23.15■■□□□ 1.3
HIF3A-208ENST00000524533 SBF2Q86WG5 1849 aa23.15■■□□□ 1.3
HIF3A-208ENST00000524533 RGPD3A6NKT7 1758 aaPredicted RBP23.15■■□□□ 1.3
HIF3A-208ENST00000524533 RGPD4Q7Z3J3 1758 aa23.15■■□□□ 1.3
HIF3A-208ENST00000524533 C11orf95C9JLR9 678 aaPredicted RBP23.15■■□□□ 1.3
HIF3A-208ENST00000524533 ARHGEF25Q86VW2 580 aa23.15■■□□□ 1.3
HIF3A-208ENST00000524533 AXIN2Q9Y2T1 843 aa23.15■■□□□ 1.3
HIF3A-208ENST00000524533 DDB1Q16531 1140 aa23.14■■□□□ 1.29
HIF3A-208ENST00000524533 CD163L1Q9NR16 1453 aa23.12■■□□□ 1.29
HIF3A-208ENST00000524533 LTN1O94822 1766 aa23.1■■□□□ 1.29
HIF3A-208ENST00000524533 CSB-PGBD3P0DP91 1061 aa23.1■■□□□ 1.29
HIF3A-208ENST00000524533 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.09■■□□□ 1.29
HIF3A-208ENST00000524533 CDCA7Q9BWT1 371 aaPredicted RBP23.09■■□□□ 1.29
HIF3A-208ENST00000524533 USP31Q70CQ4 1352 aa23.09■■□□□ 1.29
HIF3A-208ENST00000524533 NBPF14Q5TI25 921 aa23.08■■□□□ 1.29
HIF3A-208ENST00000524533 TMC1Q8TDI8 760 aa23.07■■□□□ 1.28
HIF3A-208ENST00000524533 CARD10Q9BWT7 1032 aa23.07■■□□□ 1.28
HIF3A-208ENST00000524533 CCDC7Q96M83 1385 aa23.06■■□□□ 1.28
HIF3A-208ENST00000524533 HDGFL2Q7Z4V5 671 aaPredicted RBP23.06■■□□□ 1.28
HIF3A-208ENST00000524533 EDC4Q6P2E9 1401 aaKnown RBP23.06■■□□□ 1.28
HIF3A-208ENST00000524533 NME9Q86XW9 330 aa23.05■■□□□ 1.28
HIF3A-208ENST00000524533 MARCH10Q8NA82 808 aaPredicted RBP23.04■■□□□ 1.28
HIF3A-208ENST00000524533 BCL9O00512 1426 aa23.04■■□□□ 1.28
HIF3A-208ENST00000524533 TNS2Q63HR2 1409 aa23.03■■□□□ 1.28
HIF3A-208ENST00000524533 A0A1W2PP64 1363 aa23.02■■□□□ 1.28
HIF3A-208ENST00000524533 BCL11BQ9C0K0 894 aaPredicted RBP23.02■■□□□ 1.28
HIF3A-208ENST00000524533 SLC12A5Q9H2X9 1139 aa23.02■■□□□ 1.28
HIF3A-208ENST00000524533 PLSCR1O15162 318 aa23.01■■□□□ 1.27
HIF3A-208ENST00000524533 TERF2IPQ9NYB0 399 aa23.01■■□□□ 1.27
HIF3A-208ENST00000524533 ERBB3P21860 1342 aa23.01■■□□□ 1.27
HIF3A-208ENST00000524533 PTF1AQ7RTS3 328 aa22.99■■□□□ 1.27
HIF3A-208ENST00000524533 PUS7Q96PZ0 661 aaKnown RBP22.99■■□□□ 1.27
HIF3A-208ENST00000524533 NHSQ6T4R5 1651 aa22.98■■□□□ 1.27
HIF3A-208ENST00000524533 EXOC5O00471 708 aa22.98■■□□□ 1.27
HIF3A-208ENST00000524533 NINLQ9Y2I6 1382 aa22.97■■□□□ 1.27
HIF3A-208ENST00000524533 FAM208AQ9UK61 1670 aaKnown RBP22.97■■□□□ 1.27
HIF3A-208ENST00000524533 NLRP2Q9NX02 1062 aa22.96■■□□□ 1.27
HIF3A-208ENST00000524533 CASZ1Q86V15 1759 aa22.96■■□□□ 1.27
HIF3A-208ENST00000524533 ANKRD24Q8TF21 1146 aa22.94■■□□□ 1.26
HIF3A-208ENST00000524533 TESK2Q96S53 571 aa22.94■■□□□ 1.26
HIF3A-208ENST00000524533 ANO8Q9HCE9 1232 aaPredicted RBP22.94■■□□□ 1.26
HIF3A-208ENST00000524533 ST20-MTHFSA0A0A6YYL1 179 aa22.93■■□□□ 1.26
HIF3A-208ENST00000524533 SPON1Q9HCB6 807 aa22.93■■□□□ 1.26
HIF3A-208ENST00000524533 KCNQ2O43526 872 aa22.91■■□□□ 1.26
HIF3A-208ENST00000524533 IL2RBP14784 551 aa22.91■■□□□ 1.26
HIF3A-208ENST00000524533 PPP1R1BQ9UD71 204 aaPredicted RBP22.9■■□□□ 1.26
HIF3A-208ENST00000524533 SLC24A1O60721 1099 aa22.89■■□□□ 1.25
HIF3A-208ENST00000524533 PROM2Q8N271 834 aa22.89■■□□□ 1.25
HIF3A-208ENST00000524533 BTAF1O14981 1849 aa22.88■■□□□ 1.25
HIF3A-208ENST00000524533 TRIM26Q12899 539 aaPredicted RBP22.88■■□□□ 1.25
HIF3A-208ENST00000524533 TXNRD1Q16881 649 aa22.88■■□□□ 1.25
HIF3A-208ENST00000524533 COG3Q96JB2 828 aa22.87■■□□□ 1.25
HIF3A-208ENST00000524533 ANKRD36BQ8N2N9 1353 aa22.87■■□□□ 1.25
HIF3A-208ENST00000524533 IP6K1Q92551 441 aa22.86■■□□□ 1.25
HIF3A-208ENST00000524533 ACSBG1Q96GR2 724 aa22.86■■□□□ 1.25
HIF3A-208ENST00000524533 STK32BQ9NY57 414 aa22.85■■□□□ 1.25
HIF3A-208ENST00000524533 USP47Q96K76 1375 aa22.85■■□□□ 1.25
HIF3A-208ENST00000524533 LTV1Q96GA3 475 aaPredicted RBP22.84■■□□□ 1.25
HIF3A-208ENST00000524533 PAPPAQ13219 1627 aa22.83■■□□□ 1.25
HIF3A-208ENST00000524533 MAP3K19Q56UN5 1328 aa22.82■■□□□ 1.24
HIF3A-208ENST00000524533 RGPD2P0DJD1 1756 aa22.82■■□□□ 1.24
HIF3A-208ENST00000524533 MYOM1P52179 1685 aa22.82■■□□□ 1.24
HIF3A-208ENST00000524533 TMF1P82094 1093 aa22.82■■□□□ 1.24
HIF3A-208ENST00000524533 PDGFDQ9GZP0 370 aaPredicted RBP22.82■■□□□ 1.24
HIF3A-208ENST00000524533 KIF20BQ96Q89 1820 aa22.82■■□□□ 1.24
HIF3A-208ENST00000524533 SLC15A2Q16348 729 aa22.81■■□□□ 1.24
HIF3A-208ENST00000524533 RTL1A6NKG5 1358 aa22.8■■□□□ 1.24
HIF3A-208ENST00000524533 HOXC9P31274 260 aa22.8■■□□□ 1.24
HIF3A-208ENST00000524533 AMPHP49418 695 aa22.8■■□□□ 1.24
HIF3A-208ENST00000524533 DOT1LQ8TEK3 1739 aa22.79■■□□□ 1.24
HIF3A-208ENST00000524533 ZBTB7AO95365 584 aa22.79■■□□□ 1.24
HIF3A-208ENST00000524533 SHANK3Q9BYB0 1731 aa22.79■■□□□ 1.24
HIF3A-208ENST00000524533 KAT6BQ8WYB5 2073 aa22.77■■□□□ 1.24
HIF3A-208ENST00000524533 FBLN1P23142 703 aa22.77■■□□□ 1.24
HIF3A-208ENST00000524533 DDX54Q8TDD1 881 aaKnown RBP22.76■■□□□ 1.23
HIF3A-208ENST00000524533 MEGF6O75095 1541 aa22.75■■□□□ 1.23
HIF3A-208ENST00000524533 SMG6Q86US8 1419 aaKnown RBP22.74■■□□□ 1.23
HIF3A-208ENST00000524533 DCAF8L1A6NGE4 600 aa22.74■■□□□ 1.23
HIF3A-208ENST00000524533 CDCA8Q53HL2 280 aa22.74■■□□□ 1.23
HIF3A-208ENST00000524533 GGNBP2Q9H3C7 697 aa22.74■■□□□ 1.23
HIF3A-208ENST00000524533 ATF5Q9Y2D1 282 aaPredicted RBP22.74■■□□□ 1.23
HIF3A-208ENST00000524533 FYB1O15117 783 aa22.73■■□□□ 1.23
HIF3A-208ENST00000524533 PTGER2P43116 358 aa22.73■■□□□ 1.23
HIF3A-208ENST00000524533 RRS1Q15050 365 aaKnown RBP22.73■■□□□ 1.23
HIF3A-208ENST00000524533 QSER1Q2KHR3 1735 aa22.71■■□□□ 1.23
HIF3A-208ENST00000524533 MTFR1LQ9H019 292 aa22.71■■□□□ 1.23
HIF3A-208ENST00000524533 LY75O60449 1722 aa22.69■■□□□ 1.22
HIF3A-208ENST00000524533 YY1P25490 414 aa22.69■■□□□ 1.22
HIF3A-208ENST00000524533 ZNF827Q17R98 1081 aa22.69■■□□□ 1.22
HIF3A-208ENST00000524533 ZCRB1Q8TBF4 217 aaKnown RBP22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms