RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 MORC1Q86VD1 984 aa9.15□□□□□ -0.94
HDAC9-227ENST00000523867 CCDC94Q9BW85 323 aaPredicted RBP9.15□□□□□ -0.94
HDAC9-227ENST00000523867 RIPOR2Q9Y4F9 1068 aa9.15□□□□□ -0.94
HDAC9-227ENST00000523867 USP19O94966 1318 aa9.15□□□□□ -0.95
HDAC9-227ENST00000523867 DEPDC5O75140 1603 aa9.15□□□□□ -0.95
HDAC9-227ENST00000523867 RAPGEF3O95398 923 aa9.15□□□□□ -0.95
HDAC9-227ENST00000523867 PTMAP06454 111 aaKnown RBP9.15□□□□□ -0.95
HDAC9-227ENST00000523867 MYOM2P54296 1465 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 SEC24BO95487 1268 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 ATXN8OSP0DMR3 200 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 ZSCAN30Q86W11 494 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 PMFBP1Q8TBY8 1022 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 RUNDC1Q96C34 613 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 REREQ9P2R6 1566 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 MCM4P33991 863 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 RARSP54136 660 aaKnown RBP9.14□□□□□ -0.95
HDAC9-227ENST00000523867 HS1BP3Q53T59 392 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 RRP7AQ9Y3A4 280 aaKnown RBP9.14□□□□□ -0.95
HDAC9-227ENST00000523867 PREX1Q8TCU6 1659 aa9.14□□□□□ -0.95
HDAC9-227ENST00000523867 NEURL4Q96JN8 1562 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 CCDC173Q0VFZ6 552 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 ABCA6Q8N139 1617 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 FER1L4A9Z1Z3 1794 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 IRF5Q13568 498 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 HSP90AB4PQ58FF6 505 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 TCP11L2Q8N4U5 519 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 PPP1R9BQ96SB3 815 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 UPF2Q9HAU5 1272 aaKnown RBP9.13□□□□□ -0.95
HDAC9-227ENST00000523867 FAM13BQ9NYF5 915 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 VWDEQ8N2E2 1590 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 UGGT1Q9NYU2 1555 aa9.13□□□□□ -0.95
HDAC9-227ENST00000523867 SBNO2Q9Y2G9 1366 aa9.12□□□□□ -0.95
HDAC9-227ENST00000523867 ATP7AQ04656 1500 aa9.12□□□□□ -0.95
HDAC9-227ENST00000523867 IQSEC2Q5JU85 1478 aa9.12□□□□□ -0.95
HDAC9-227ENST00000523867 NSD3Q9BZ95 1437 aa9.12□□□□□ -0.95
HDAC9-227ENST00000523867 SLKQ9H2G2 1235 aaPredicted RBP9.12□□□□□ -0.95
HDAC9-227ENST00000523867 CHGAP10645 457 aaKnown RBP9.12□□□□□ -0.95
HDAC9-227ENST00000523867 NOL8Q76FK4 1167 aaKnown RBP9.12□□□□□ -0.95
HDAC9-227ENST00000523867 WDR63Q8IWG1 891 aa9.12□□□□□ -0.95
HDAC9-227ENST00000523867 TRAK2O60296 914 aa9.11□□□□□ -0.95
HDAC9-227ENST00000523867 CERKQ8TCT0 537 aa9.11□□□□□ -0.95
HDAC9-227ENST00000523867 ANP32BQ92688 251 aaKnown RBP9.11□□□□□ -0.95
HDAC9-227ENST00000523867 SLC12A5Q9H2X9 1139 aa9.11□□□□□ -0.95
HDAC9-227ENST00000523867 TRAK1Q9UPV9 953 aa9.11□□□□□ -0.95
HDAC9-227ENST00000523867 ECM2O94769 699 aaPredicted RBP9.11□□□□□ -0.95
HDAC9-227ENST00000523867 CFAP53Q96M91 514 aa9.11□□□□□ -0.95
HDAC9-227ENST00000523867 BCL2L13Q9BXK5 485 aa9.11□□□□□ -0.95
HDAC9-227ENST00000523867 PCDHB15Q9Y5E8 787 aa9.11□□□□□ -0.95
HDAC9-227ENST00000523867 DDX11L8A8MPP1 907 aa9.1□□□□□ -0.95
HDAC9-227ENST00000523867 RLBP1P12271 317 aa9.1□□□□□ -0.95
HDAC9-227ENST00000523867 CSPP1Q1MSJ5 1256 aa9.1□□□□□ -0.95
HDAC9-227ENST00000523867 RWDD1Q9H446 243 aaPredicted RBP9.1□□□□□ -0.95
HDAC9-227ENST00000523867 GPBP1L1Q9HC44 474 aaPredicted RBP9.1□□□□□ -0.95
HDAC9-227ENST00000523867 INO80Q9ULG1 1556 aaPredicted RBP9.1□□□□□ -0.95
HDAC9-227ENST00000523867 MSNP26038 577 aaKnown RBP9.1□□□□□ -0.95
HDAC9-227ENST00000523867 MTHFSP49914 203 aa9.1□□□□□ -0.95
HDAC9-227ENST00000523867 SLC20A2Q08357 652 aa9.1□□□□□ -0.95
HDAC9-227ENST00000523867 PDZRN3Q9UPQ7 1066 aa9.1□□□□□ -0.95
HDAC9-227ENST00000523867 KIF1BO60333 1816 aa9.09□□□□□ -0.95
HDAC9-227ENST00000523867 ZNF500O60304 480 aaPredicted RBP9.09□□□□□ -0.95
HDAC9-227ENST00000523867 ZNF830Q96NB3 372 aaPredicted RBP9.09□□□□□ -0.95
HDAC9-227ENST00000523867 TNNQ9UQP3 1299 aa9.09□□□□□ -0.95
HDAC9-227ENST00000523867 NOS1P29475 1434 aa9.09□□□□□ -0.95
HDAC9-227ENST00000523867 YEATS2Q9ULM3 1422 aa9.09□□□□□ -0.95
HDAC9-227ENST00000523867 ZNF518AQ6AHZ1 1483 aa9.09□□□□□ -0.95
HDAC9-227ENST00000523867 NRXN1Q9ULB1 1477 aa9.09□□□□□ -0.95
HDAC9-227ENST00000523867 MYO3AQ8NEV4 1616 aa9.09□□□□□ -0.96
HDAC9-227ENST00000523867 ZMYM3Q14202 1370 aa9.08□□□□□ -0.96
HDAC9-227ENST00000523867 TBC1D32Q96NH3 1257 aa9.08□□□□□ -0.96
HDAC9-227ENST00000523867 SHPRHQ149N8 1683 aa9.08□□□□□ -0.96
HDAC9-227ENST00000523867 UQCRHLA0A096LP55 91 aa9.08□□□□□ -0.96
HDAC9-227ENST00000523867 UQCRHP07919 91 aa9.08□□□□□ -0.96
HDAC9-227ENST00000523867 NLRP1Q9C000 1473 aa9.08□□□□□ -0.96
HDAC9-227ENST00000523867 AGLP35573 1532 aa9.08□□□□□ -0.96
HDAC9-227ENST00000523867 EFCAB6Q5THR3 1501 aa9.08□□□□□ -0.96
HDAC9-227ENST00000523867 MROH1Q8NDA8 1641 aa9.07□□□□□ -0.96
HDAC9-227ENST00000523867 FBXW7Q969H0 707 aa9.07□□□□□ -0.96
HDAC9-227ENST00000523867 C14orf93Q9H972 538 aaKnown RBP9.07□□□□□ -0.96
HDAC9-227ENST00000523867 IFT172Q9UG01 1749 aa9.07□□□□□ -0.96
HDAC9-227ENST00000523867 UNCXA6NJT0 531 aa9.07□□□□□ -0.96
HDAC9-227ENST00000523867 U2AF1L5P0DN76 240 aaPredicted RBP9.07□□□□□ -0.96
HDAC9-227ENST00000523867 MCM5P33992 734 aa9.07□□□□□ -0.96
HDAC9-227ENST00000523867 U2AF1Q01081 240 aaKnown RBP eCLIP9.07□□□□□ -0.96
HDAC9-227ENST00000523867 MVPQ14764 893 aaKnown RBP9.07□□□□□ -0.96
HDAC9-227ENST00000523867 TMEM132EQ6IEE7 984 aa9.07□□□□□ -0.96
HDAC9-227ENST00000523867 SETBP1Q9Y6X0 1596 aa9.07□□□□□ -0.96
HDAC9-227ENST00000523867 SKOR2Q2VWA4 1001 aaPredicted RBP9.06□□□□□ -0.96
HDAC9-227ENST00000523867 ZKSCAN2Q63HK3 967 aa9.06□□□□□ -0.96
HDAC9-227ENST00000523867 RETREG2Q8NC44 543 aa9.06□□□□□ -0.96
HDAC9-227ENST00000523867 TBC1D2Q9BYX2 928 aa9.06□□□□□ -0.96
HDAC9-227ENST00000523867 CHMP5Q9NZZ3 219 aa9.06□□□□□ -0.96
HDAC9-227ENST00000523867 MROH2AA6NES4 1674 aa9.06□□□□□ -0.96
HDAC9-227ENST00000523867 SOX12O15370 315 aa9.06□□□□□ -0.96
HDAC9-227ENST00000523867 SLC52A1Q9NWF4 448 aa9.06□□□□□ -0.96
HDAC9-227ENST00000523867 SIGLEC1Q9BZZ2 1709 aa9.05□□□□□ -0.96
HDAC9-227ENST00000523867 MARCH6O60337 910 aa9.05□□□□□ -0.96
HDAC9-227ENST00000523867 SASS6Q6UVJ0 657 aa9.05□□□□□ -0.96
HDAC9-227ENST00000523867 DZIP1LQ8IYY4 767 aaKnown RBP9.05□□□□□ -0.96
HDAC9-227ENST00000523867 R3HCC1Q9Y3T6 440 aaKnown RBP9.05□□□□□ -0.96
HDAC9-227ENST00000523867 SPTY2D1Q68D10 685 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms