RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 SKIV2LQ15477 1246 aaKnown RBP7.03□□□□□ -1.28
HMGB1P41-201ENST00000520234 SV2AQ7L0J3 742 aa7.03□□□□□ -1.28
HMGB1P41-201ENST00000520234 BEND7Q8N7W2 519 aaPredicted RBP7.03□□□□□ -1.28
HMGB1P41-201ENST00000520234 FAM174AQ8TBP5 190 aa7.03□□□□□ -1.28
HMGB1P41-201ENST00000520234 BAP1Q92560 729 aa7.03□□□□□ -1.28
HMGB1P41-201ENST00000520234 CELA2BP08218 269 aaPredicted RBP7.02□□□□□ -1.29
HMGB1P41-201ENST00000520234 SRSF11Q05519 484 aaKnown RBP7.02□□□□□ -1.29
HMGB1P41-201ENST00000520234 NR5A1Q13285 461 aa7.02□□□□□ -1.29
HMGB1P41-201ENST00000520234 MYSM1Q5VVJ2 828 aa7.02□□□□□ -1.29
HMGB1P41-201ENST00000520234 CDK15Q96Q40 435 aa7.02□□□□□ -1.29
HMGB1P41-201ENST00000520234 CNTNAP5Q8WYK1 1306 aa7.01□□□□□ -1.29
HMGB1P41-201ENST00000520234 TTLL8A6PVC2 850 aa7.01□□□□□ -1.29
HMGB1P41-201ENST00000520234 ITGA6P23229 1130 aa7.01□□□□□ -1.29
HMGB1P41-201ENST00000520234 RETREG3Q86VR2 466 aa7.01□□□□□ -1.29
HMGB1P41-201ENST00000520234 HLA-CQ95604 372 aa7.01□□□□□ -1.29
HMGB1P41-201ENST00000520234 PCMTD1Q96MG8 357 aaPredicted RBP7.01□□□□□ -1.29
HMGB1P41-201ENST00000520234 SPTLC1O15269 473 aa7□□□□□ -1.29
HMGB1P41-201ENST00000520234 HOXA2O43364 376 aa7□□□□□ -1.29
HMGB1P41-201ENST00000520234 TUSC1Q2TAM9 212 aa7□□□□□ -1.29
HMGB1P41-201ENST00000520234 VWA5B2Q8N398 1253 aa7□□□□□ -1.29
HMGB1P41-201ENST00000520234 TSEN34Q9BSV6 310 aaKnown RBP7□□□□□ -1.29
HMGB1P41-201ENST00000520234 CDC14CA4D256 554 aa6.99□□□□□ -1.29
HMGB1P41-201ENST00000520234 SLC35F4A4IF30 521 aa6.99□□□□□ -1.29
HMGB1P41-201ENST00000520234 FURINP09958 794 aa6.99□□□□□ -1.29
HMGB1P41-201ENST00000520234 CLK2P49760 499 aaKnown RBP6.99□□□□□ -1.29
HMGB1P41-201ENST00000520234 PTPRNQ16849 979 aa6.99□□□□□ -1.29
HMGB1P41-201ENST00000520234 RIC3Q7Z5B4 369 aa6.99□□□□□ -1.29
HMGB1P41-201ENST00000520234 NR3C2P08235 984 aa6.98□□□□□ -1.29
HMGB1P41-201ENST00000520234 RSBN1LQ6PCB5 846 aaPredicted RBP6.98□□□□□ -1.29
HMGB1P41-201ENST00000520234 EVA1BQ9NVM1 165 aa6.98□□□□□ -1.29
HMGB1P41-201ENST00000520234 POLR3EQ9NVU0 708 aa6.98□□□□□ -1.29
HMGB1P41-201ENST00000520234 MOXD2PA6NHM9 499 aa6.97□□□□□ -1.29
HMGB1P41-201ENST00000520234 SYMPKQ92797 1274 aaKnown RBP6.97□□□□□ -1.29
HMGB1P41-201ENST00000520234 FDX1P10109 184 aa6.96□□□□□ -1.3
HMGB1P41-201ENST00000520234 KCNH2Q12809 1159 aa6.96□□□□□ -1.3
HMGB1P41-201ENST00000520234 PRPF38BQ5VTL8 546 aaKnown RBP6.96□□□□□ -1.3
HMGB1P41-201ENST00000520234 ATP1B4Q9UN42 357 aaPredicted RBP6.96□□□□□ -1.3
HMGB1P41-201ENST00000520234 NDUFV2P19404 249 aa6.95□□□□□ -1.3
HMGB1P41-201ENST00000520234 ARID5BQ14865 1188 aa6.95□□□□□ -1.3
HMGB1P41-201ENST00000520234 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.95□□□□□ -1.3
HMGB1P41-201ENST00000520234 LIMD1Q9UGP4 676 aa6.95□□□□□ -1.3
HMGB1P41-201ENST00000520234 SH3RF1Q7Z6J0 888 aa6.94□□□□□ -1.3
HMGB1P41-201ENST00000520234 PROCA1Q8NCQ7 364 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P41-201ENST00000520234 GTF3C3Q9Y5Q9 886 aa6.94□□□□□ -1.3
HMGB1P41-201ENST00000520234 SPDYE5A6NIY4 337 aa6.93□□□□□ -1.3
HMGB1P41-201ENST00000520234 FIGNL2A6NMB9 653 aa6.93□□□□□ -1.3
HMGB1P41-201ENST00000520234 GUCA2AQ02747 115 aa6.93□□□□□ -1.3
HMGB1P41-201ENST00000520234 ALYREFQ86V81 257 aaKnown RBP6.93□□□□□ -1.3
HMGB1P41-201ENST00000520234 ZBTB3Q9H5J0 574 aa6.93□□□□□ -1.3
HMGB1P41-201ENST00000520234 LILRB3O75022 631 aa6.92□□□□□ -1.3
HMGB1P41-201ENST00000520234 GRM5P41594 1212 aa6.92□□□□□ -1.3
HMGB1P41-201ENST00000520234 PPP2R2DQ66LE6 453 aa6.92□□□□□ -1.3
HMGB1P41-201ENST00000520234 NEDD1Q8NHV4 660 aa6.92□□□□□ -1.3
HMGB1P41-201ENST00000520234 PCDHGC3Q9UN70 934 aa6.92□□□□□ -1.3
HMGB1P41-201ENST00000520234 PCDHB15Q9Y5E8 787 aa6.92□□□□□ -1.3
HMGB1P41-201ENST00000520234 MTMR2Q13614 643 aa6.91□□□□□ -1.3
HMGB1P41-201ENST00000520234 KRBA1A5PL33 1030 aa6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 NUTM2BA6NNL0 878 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 NUTM2EB1AL46 878 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 C6orf229H3BNL8 230 aa6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 BCRP11274 1271 aa6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 GAS6Q14393 721 aa6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 CSPP1Q1MSJ5 1256 aa6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 TMEM259Q4ZIN3 620 aa6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 NUTM2DQ5VT03 806 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 KRTAP19-1Q8IUB9 90 aa6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 NUTM2AQ8IVF1 878 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P41-201ENST00000520234 HRCP23327 699 aa6.89□□□□□ -1.31
HMGB1P41-201ENST00000520234 QPCTQ16769 361 aa6.89□□□□□ -1.31
HMGB1P41-201ENST00000520234 LRRC4BQ9NT99 713 aa6.89□□□□□ -1.31
HMGB1P41-201ENST00000520234 SPINT1O43278 529 aa6.88□□□□□ -1.31
HMGB1P41-201ENST00000520234 RFC5P40937 340 aa6.88□□□□□ -1.31
HMGB1P41-201ENST00000520234 CABLES1Q8TDN4 633 aa6.88□□□□□ -1.31
HMGB1P41-201ENST00000520234 EMILIN1Q9Y6C2 1016 aa6.88□□□□□ -1.31
HMGB1P41-201ENST00000520234 RTL5Q5HYW3 569 aaPredicted RBP6.87□□□□□ -1.31
HMGB1P41-201ENST00000520234 ZMYM1Q5SVZ6 1142 aa6.87□□□□□ -1.31
HMGB1P41-201ENST00000520234 ERICH6Q7L0X2 663 aa6.87□□□□□ -1.31
HMGB1P41-201ENST00000520234 BANK1Q8NDB2 785 aa6.87□□□□□ -1.31
HMGB1P41-201ENST00000520234 FOXJ1Q92949 421 aa6.87□□□□□ -1.31
HMGB1P41-201ENST00000520234 MBIPQ9NS73 344 aa6.87□□□□□ -1.31
HMGB1P41-201ENST00000520234 FLIIQ13045 1269 aa6.86□□□□□ -1.31
HMGB1P41-201ENST00000520234 GOLGA2P5Q9HBQ8 144 aa6.86□□□□□ -1.31
HMGB1P41-201ENST00000520234 DESI1Q6ICB0 168 aa6.85□□□□□ -1.31
HMGB1P41-201ENST00000520234 FSHRP23945 695 aa6.84□□□□□ -1.31
HMGB1P41-201ENST00000520234 ITGB7P26010 798 aa6.84□□□□□ -1.31
HMGB1P41-201ENST00000520234 FBXO31Q5XUX0 539 aaPredicted RBP6.84□□□□□ -1.31
HMGB1P41-201ENST00000520234 HELBQ8NG08 1087 aaPredicted RBP6.84□□□□□ -1.31
HMGB1P41-201ENST00000520234 PRR7Q8TB68 274 aa6.84□□□□□ -1.31
HMGB1P41-201ENST00000520234 IGF1RP08069 1367 aa6.83□□□□□ -1.32
HMGB1P41-201ENST00000520234 SENP3-EIF4A1A0A087X0R7 540 aa6.83□□□□□ -1.32
HMGB1P41-201ENST00000520234 CFAP99D6REC4 459 aa6.83□□□□□ -1.32
HMGB1P41-201ENST00000520234 SOCS7O14512 581 aa6.83□□□□□ -1.32
HMGB1P41-201ENST00000520234 AP1G2O75843 785 aa6.83□□□□□ -1.32
HMGB1P41-201ENST00000520234 KRTAP4-7Q9BYR0 210 aa6.83□□□□□ -1.32
HMGB1P41-201ENST00000520234 MAP4K5Q9Y4K4 846 aa6.83□□□□□ -1.32
HMGB1P41-201ENST00000520234 Q6ZVU0 165 aa6.82□□□□□ -1.32
HMGB1P41-201ENST00000520234 BPHLQ86WA6 291 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P41-201ENST00000520234 CCDC116Q8IYX3 515 aa6.82□□□□□ -1.32
HMGB1P41-201ENST00000520234 APBB1O00213 710 aa6.81□□□□□ -1.32
HMGB1P41-201ENST00000520234 CTHP32929 405 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms