RNA–Protein interactions for RNA: ENST00000518930.1

PCM1-209, Transcript of pericentriolar material 1, human

TSL 3

Gene PCM1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-209	ENST00000518930	USP21	Q9UK80	565 aa		32.92	■■■□□ 2.86
PCM1-209	ENST00000518930	CAMTA1	Q9Y6Y1	1673 aa		32.91	■■■□□ 2.86
PCM1-209	ENST00000518930	KIF24	Q5T7B8	1368 aa		32.9	■■■□□ 2.86
PCM1-209	ENST00000518930	PEAK1	Q9H792	1746 aa		32.9	■■■□□ 2.86
PCM1-209	ENST00000518930	BLM	P54132	1417 aa	Predicted RBP	32.89	■■■□□ 2.86
PCM1-209	ENST00000518930	ZNF772	Q68DY9	489 aa	Predicted RBP	32.89	■■■□□ 2.86
PCM1-209	ENST00000518930	BCL9L	Q86UU0	1499 aa		32.88	■■■□□ 2.85
PCM1-209	ENST00000518930	FLT4	P35916	1363 aa		32.88	■■■□□ 2.85
PCM1-209	ENST00000518930	EMILIN1	Q9Y6C2	1016 aa		32.88	■■■□□ 2.85
PCM1-209	ENST00000518930	COL5A2	P05997	1499 aa	Predicted RBP	32.87	■■■□□ 2.85
PCM1-209	ENST00000518930	PPM1G	O15355	546 aa	Predicted RBP	32.87	■■■□□ 2.85
PCM1-209	ENST00000518930	UNC5CL	Q8IV45	518 aa		32.87	■■■□□ 2.85
PCM1-209	ENST00000518930	SMG6	Q86US8	1419 aa	Known RBP	32.86	■■■□□ 2.85
PCM1-209	ENST00000518930	IP6K1	Q92551	441 aa		32.86	■■■□□ 2.85
PCM1-209	ENST00000518930	PARD3	Q8TEW0	1356 aa		32.85	■■■□□ 2.85
PCM1-209	ENST00000518930	HOXC9	P31274	260 aa		32.85	■■■□□ 2.85
PCM1-209	ENST00000518930	EVA1C	P58658	441 aa		32.85	■■■□□ 2.85
PCM1-209	ENST00000518930	POLK	Q9UBT6	870 aa		32.85	■■■□□ 2.85
PCM1-209	ENST00000518930	STRN4	Q9NRL3	753 aa		32.84	■■■□□ 2.85
PCM1-209	ENST00000518930	AXIN2	Q9Y2T1	843 aa		32.84	■■■□□ 2.85
PCM1-209	ENST00000518930	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.81	■■■□□ 2.84
PCM1-209	ENST00000518930	TRPC5	Q9UL62	973 aa	Predicted RBP	32.81	■■■□□ 2.84
PCM1-209	ENST00000518930	FAM208A	Q9UK61	1670 aa	Known RBP	32.81	■■■□□ 2.84
PCM1-209	ENST00000518930	RALBP1	Q15311	655 aa		32.8	■■■□□ 2.84
PCM1-209	ENST00000518930	ATRN	O75882	1429 aa		32.79	■■■□□ 2.84
PCM1-209	ENST00000518930	CSB-PGBD3	P0DP91	1061 aa		32.79	■■■□□ 2.84
PCM1-209	ENST00000518930	INSR	P06213	1382 aa		32.79	■■■□□ 2.84
PCM1-209	ENST00000518930	ANKRD24	Q8TF21	1146 aa		32.78	■■■□□ 2.84
PCM1-209	ENST00000518930	CCDC9	Q9Y3X0	531 aa	Known RBP	32.78	■■■□□ 2.84
PCM1-209	ENST00000518930	ERBB3	P21860	1342 aa		32.77	■■■□□ 2.84
PCM1-209	ENST00000518930	VPS72	Q15906	364 aa		32.77	■■■□□ 2.84
PCM1-209	ENST00000518930	RGS17	Q9UGC6	210 aa	Predicted RBP	32.77	■■■□□ 2.84
PCM1-209	ENST00000518930	WDR17	Q8IZU2	1322 aa		32.77	■■■□□ 2.84
PCM1-209	ENST00000518930	QTRT2	Q9H974	415 aa	Known RBP	32.76	■■■□□ 2.83
PCM1-209	ENST00000518930	PPP2R1A	P30153	589 aa		32.75	■■■□□ 2.83
PCM1-209	ENST00000518930	MTHFS	P49914	203 aa		32.75	■■■□□ 2.83
PCM1-209	ENST00000518930	HSP90AB2P	Q58FF8	381 aa		32.75	■■■□□ 2.83
PCM1-209	ENST00000518930	LTV1	Q96GA3	475 aa	Predicted RBP	32.75	■■■□□ 2.83
PCM1-209	ENST00000518930	CRB1	P82279	1406 aa		32.75	■■■□□ 2.83
PCM1-209	ENST00000518930	LARP1	Q6PKG0	1096 aa	Known RBP	32.74	■■■□□ 2.83
PCM1-209	ENST00000518930	TOM1L2	Q6ZVM7	507 aa		32.72	■■■□□ 2.83
PCM1-209	ENST00000518930	PRKRIP1	Q9H875	184 aa	Predicted RBP	32.72	■■■□□ 2.83
PCM1-209	ENST00000518930	ANP32C	O43423	234 aa		32.7	■■■□□ 2.83
PCM1-209	ENST00000518930	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.7	■■■□□ 2.82
PCM1-209	ENST00000518930	GLI3	P10071	1580 aa		32.69	■■■□□ 2.82
PCM1-209	ENST00000518930	SPATA31A5	Q5VU36	1347 aa		32.69	■■■□□ 2.82
PCM1-209	ENST00000518930	SPATA31A7	Q8IWB4	1347 aa		32.69	■■■□□ 2.82
PCM1-209	ENST00000518930	GJD4	Q96KN9	370 aa	Predicted RBP	32.68	■■■□□ 2.82
PCM1-209	ENST00000518930	CFAP53	Q96M91	514 aa		32.68	■■■□□ 2.82
PCM1-209	ENST00000518930	POTEA	Q6S8J7	498 aa		32.67	■■■□□ 2.82
PCM1-209	ENST00000518930	NLRP2	Q9NX02	1062 aa		32.67	■■■□□ 2.82
PCM1-209	ENST00000518930	SPATA31A1	Q5TZJ5	1347 aa		32.67	■■■□□ 2.82
PCM1-209	ENST00000518930	RGPD2	P0DJD1	1756 aa		32.67	■■■□□ 2.82
PCM1-209	ENST00000518930	USP35	Q9P2H5	1018 aa		32.66	■■■□□ 2.82
PCM1-209	ENST00000518930	RBM6	P78332	1123 aa	Known RBP	32.65	■■■□□ 2.82
PCM1-209	ENST00000518930	RXRB	P28702	533 aa		32.64	■■■□□ 2.82
PCM1-209	ENST00000518930	CARD10	Q9BWT7	1032 aa		32.64	■■■□□ 2.82
PCM1-209	ENST00000518930	WNK3	Q9BYP7	1800 aa		32.63	■■■□□ 2.81
PCM1-209	ENST00000518930	EIF4A2	Q14240	407 aa	Known RBP	32.63	■■■□□ 2.81
PCM1-209	ENST00000518930	COL3A1	P02461	1466 aa	Predicted RBP	32.62	■■■□□ 2.81
PCM1-209	ENST00000518930	TCP11L2	Q8N4U5	519 aa		32.61	■■■□□ 2.81
PCM1-209	ENST00000518930	THRAP3	Q9Y2W1	955 aa	Known RBP	32.61	■■■□□ 2.81
PCM1-209	ENST00000518930	DIAPH1	O60610	1272 aa	Known RBP	32.59	■■■□□ 2.81
PCM1-209	ENST00000518930	FAM98C	Q17RN3	349 aa	Known RBP	32.56	■■■□□ 2.8
PCM1-209	ENST00000518930	NBPF6	Q5VWK0	638 aa		32.56	■■■□□ 2.8
PCM1-209	ENST00000518930	NBPF4	Q96M43	638 aa		32.56	■■■□□ 2.8
PCM1-209	ENST00000518930	RGPD1	P0DJD0	1748 aa		32.56	■■■□□ 2.8
PCM1-209	ENST00000518930		A0A0G2JS52	829 aa		32.55	■■■□□ 2.8
PCM1-209	ENST00000518930	IL13	P35225	146 aa		32.55	■■■□□ 2.8
PCM1-209	ENST00000518930	MYT1	Q01538	1121 aa		32.55	■■■□□ 2.8
PCM1-209	ENST00000518930	DIEXF	Q68CQ4	756 aa	Known RBP	32.55	■■■□□ 2.8
PCM1-209	ENST00000518930	BARGIN	Q6ZT62	677 aa		32.55	■■■□□ 2.8
PCM1-209	ENST00000518930	THSD7A	Q9UPZ6	1657 aa		32.54	■■■□□ 2.8
PCM1-209	ENST00000518930	USHBP1	Q8N6Y0	703 aa		32.53	■■■□□ 2.8
PCM1-209	ENST00000518930	EYA1	Q99502	592 aa		32.53	■■■□□ 2.8
PCM1-209	ENST00000518930	IGSF1	Q8N6C5	1336 aa		32.52	■■■□□ 2.8
PCM1-209	ENST00000518930	PARP4	Q9UKK3	1724 aa	Known RBP	32.52	■■■□□ 2.8
PCM1-209	ENST00000518930	NCAPD2	Q15021	1401 aa		32.51	■■■□□ 2.8
PCM1-209	ENST00000518930	NUDC	Q9Y266	331 aa		32.51	■■■□□ 2.79
PCM1-209	ENST00000518930	RGS12	O14924	1447 aa		32.51	■■■□□ 2.79
PCM1-209	ENST00000518930	CDCA7	Q9BWT1	371 aa	Predicted RBP	32.5	■■■□□ 2.79
PCM1-209	ENST00000518930	DISP2	A7MBM2	1401 aa		32.49	■■■□□ 2.79
PCM1-209	ENST00000518930	U2SURP	O15042	1029 aa	Known RBP	32.48	■■■□□ 2.79
PCM1-209	ENST00000518930	IL2RB	P14784	551 aa		32.48	■■■□□ 2.79
PCM1-209	ENST00000518930	LRRC37A3	O60309	1634 aa		32.47	■■■□□ 2.79
PCM1-209	ENST00000518930	ONECUT3	O60422	494 aa	Predicted RBP	32.46	■■■□□ 2.79
PCM1-209	ENST00000518930	RAPGEF4	Q8WZA2	1011 aa		32.46	■■■□□ 2.79
PCM1-209	ENST00000518930	SEPT12	Q8IYM1	358 aa		32.45	■■■□□ 2.79
PCM1-209	ENST00000518930	MEGF6	O75095	1541 aa		32.44	■■■□□ 2.78
PCM1-209	ENST00000518930	SULT6B1	Q6IMI4	303 aa		32.43	■■■□□ 2.78
PCM1-209	ENST00000518930	BRWD3	Q6RI45	1802 aa		32.42	■■■□□ 2.78
PCM1-209	ENST00000518930	TAT	P17735	454 aa	Predicted RBP	32.42	■■■□□ 2.78
PCM1-209	ENST00000518930	KDR	P35968	1356 aa		32.41	■■■□□ 2.78
PCM1-209	ENST00000518930	OVOS2	A0A0G2JMS6	1433 aa		32.41	■■■□□ 2.78
PCM1-209	ENST00000518930	TNS2	Q63HR2	1409 aa		32.4	■■■□□ 2.78
PCM1-209	ENST00000518930	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.39	■■■□□ 2.78
PCM1-209	ENST00000518930	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.39	■■■□□ 2.78	4e-7	■■■■□ 24.2
PCM1-209	ENST00000518930	DDB1	Q16531	1140 aa		32.39	■■■□□ 2.78
PCM1-209	ENST00000518930	AEBP1	Q8IUX7	1158 aa		32.39	■■■□□ 2.78
PCM1-209	ENST00000518930	HMOX1	P09601	288 aa		32.38	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms