RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 HIP1O00291 1037 aa12.26□□□□□ -0.45
PDLIM3-209ENST00000514142 POLR3GO15318 223 aaPredicted RBP12.26□□□□□ -0.45
PDLIM3-209ENST00000514142 IBSPP21815 317 aaPredicted RBP12.26□□□□□ -0.45
PDLIM3-209ENST00000514142 TMEM132EQ6IEE7 984 aa12.26□□□□□ -0.45
PDLIM3-209ENST00000514142 USP25Q9UHP3 1055 aa12.26□□□□□ -0.45
PDLIM3-209ENST00000514142 CBFA2T2O43439 604 aa12.26□□□□□ -0.45
PDLIM3-209ENST00000514142 SLC4A2P04920 1241 aa12.26□□□□□ -0.45
PDLIM3-209ENST00000514142 LRRFIP2Q9Y608 721 aaKnown RBP12.26□□□□□ -0.45
PDLIM3-209ENST00000514142 GOLGA6L7A0A1B0GV03 622 aa12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 ANKRD1Q15327 319 aa12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 CCDC30Q5VVM6 783 aa12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 FERMT3Q86UX7 667 aa12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 CCDC43Q96MW1 224 aaKnown RBP12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 CALCOCO1Q9P1Z2 691 aa12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 MYOM3Q5VTT5 1437 aa12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 PIP4K2AP48426 406 aaPredicted RBP12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 PDRG1Q9NUG6 133 aa12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 JAKMIP1Q96N16 626 aaKnown RBP12.25□□□□□ -0.45
PDLIM3-209ENST00000514142 TAX1BP1Q86VP1 789 aa12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 KIF18AQ8NI77 898 aa12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 C16orf45Q96MC5 204 aaPredicted RBP12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 GTF2F1P35269 517 aaKnown RBP eCLIP12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 SART3Q15020 963 aaKnown RBP12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 C11orf95C9JLR9 678 aaPredicted RBP12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 ERLIN2O94905 339 aa12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 NEFHP12036 1026 aa12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 TNNT1P13805 278 aa12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 WDR63Q8IWG1 891 aa12.24□□□□□ -0.45
PDLIM3-209ENST00000514142 CFAP100Q494V2 611 aa12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 BLOC1S2Q6QNY1 142 aa12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 DACH1Q9UI36 760 aa12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 CFAP45Q9UL16 551 aa12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 URI1O94763 535 aaPredicted RBP12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 TXLNAP40222 546 aa12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 GIMAP7Q8NHV1 300 aa12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 SFPQP23246 707 aaKnown RBP eCLIP12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 SLFN5Q08AF3 891 aa12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 ARHGAP29Q52LW3 1261 aa12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 CWC27Q6UX04 472 aaKnown RBP12.23□□□□□ -0.45
PDLIM3-209ENST00000514142 CFAP70Q5T0N1 1121 aa12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 TRMT1Q9NXH9 659 aaKnown RBP12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 KIF2AO00139 706 aaPredicted RBP12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 ZNF428Q96B54 188 aa12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 PPP6R1Q9UPN7 881 aa12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 KIF21BO75037 1637 aa12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 CCDC183Q5T5S1 534 aa12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 SAMD1Q6SPF0 538 aaPredicted RBP12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 TMEM57Q8N5G2 664 aa12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 ZSCAN31Q96LW9 406 aaPredicted RBP12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 CRACR2AQ9BSW2 395 aa12.22□□□□□ -0.45
PDLIM3-209ENST00000514142 ENOX2Q16206 610 aaKnown RBP12.21□□□□□ -0.45
PDLIM3-209ENST00000514142 IL1RAPL2Q9NP60 686 aa12.21□□□□□ -0.45
PDLIM3-209ENST00000514142 LRRC9Q6ZRR7 1453 aa12.21□□□□□ -0.45
PDLIM3-209ENST00000514142 DYNC1I1O14576 645 aa12.21□□□□□ -0.45
PDLIM3-209ENST00000514142 CLCN1P35523 988 aa12.21□□□□□ -0.45
PDLIM3-209ENST00000514142 EPB41L2O43491 1005 aaKnown RBP12.21□□□□□ -0.46
PDLIM3-209ENST00000514142 ERC1Q8IUD2 1116 aa12.21□□□□□ -0.46
PDLIM3-209ENST00000514142 DDX11Q96FC9 970 aa12.21□□□□□ -0.46
PDLIM3-209ENST00000514142 SIL1Q9H173 461 aa12.21□□□□□ -0.46
PDLIM3-209ENST00000514142 SLC12A5Q9H2X9 1139 aa12.21□□□□□ -0.46
PDLIM3-209ENST00000514142 SMTNL1A8MU46 457 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 IPO4Q8TEX9 1081 aaKnown RBP12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 CDK5RAP3Q96JB5 506 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 CLIP2Q9UDT6 1046 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 ANKRD50Q9ULJ7 1429 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 GPATCH11Q8N954 259 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 CCDC83Q8IWF9 413 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 GDPD2Q9HCC8 539 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 WDR97A6NE52 1622 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 XRCC6P12956 609 aaKnown RBP eCLIP12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 CASTP20810 708 aaKnown RBP12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 CCT4P50991 539 aaKnown RBP12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 NUTM2GQ5VZR2 741 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 STAC3Q96MF2 364 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 PANK2Q9BZ23 570 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 TBC1D2BQ9UPU7 963 aa12.2□□□□□ -0.46
PDLIM3-209ENST00000514142 SHTN1A0MZ66 631 aa12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 CTDP1Q9Y5B0 961 aaPredicted RBP12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 PTPRGP23470 1445 aa12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 CCAR1Q8IX12 1150 aaKnown RBP12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 SYTL4Q96C24 671 aaPredicted RBP12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 TANGO6Q9C0B7 1094 aa12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 IQCEQ6IPM2 695 aa12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 CKAP2LQ8IYA6 745 aa12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 GBP3Q9H0R5 595 aa12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 LUC7LQ9NQ29 371 aaKnown RBP12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 ANKRD62A6NC57 917 aa12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 ADCY5O95622 1261 aa12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 RBM27Q9P2N5 1060 aaKnown RBP12.19□□□□□ -0.46
PDLIM3-209ENST00000514142 EVA1CP58658 441 aa12.18□□□□□ -0.46
PDLIM3-209ENST00000514142 SRCIN1Q9C0H9 1055 aa12.18□□□□□ -0.46
PDLIM3-209ENST00000514142 MCM5P33992 734 aa12.18□□□□□ -0.46
PDLIM3-209ENST00000514142 STIM1Q13586 685 aa12.18□□□□□ -0.46
PDLIM3-209ENST00000514142 OSCARQ8IYS5 282 aa12.18□□□□□ -0.46
PDLIM3-209ENST00000514142 HDGFL1Q5TGJ6 251 aa12.18□□□□□ -0.46
PDLIM3-209ENST00000514142 KIAA1328Q86T90 577 aa12.18□□□□□ -0.46
PDLIM3-209ENST00000514142 FANCD2Q9BXW9 1451 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 RRBP1Q9P2E9 1410 aaKnown RBP12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 ZSCAN12O43309 604 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms