RNA–Protein interactions for RNA: ENST00000512711.1

PDGFC-208, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-208ENST00000512711 PCMTD1Q96MG8 357 aaPredicted RBP5.67□□□□□ -1.5
PDGFC-208ENST00000512711 PURBQ96QR8 312 aaKnown RBP5.67□□□□□ -1.5
PDGFC-208ENST00000512711 TRIM34Q9BYJ4 488 aa5.67□□□□□ -1.5
PDGFC-208ENST00000512711 MRPL14Q6P1L8 145 aaKnown RBP5.66□□□□□ -1.5
PDGFC-208ENST00000512711 VASH1Q7L8A9 365 aaPredicted RBP5.66□□□□□ -1.5
PDGFC-208ENST00000512711 TRMT44Q8IYL2 757 aaKnown RBP5.66□□□□□ -1.5
PDGFC-208ENST00000512711 IRF7Q92985 503 aa5.66□□□□□ -1.5
PDGFC-208ENST00000512711 ARHGAP9Q9BRR9 750 aa5.66□□□□□ -1.5
PDGFC-208ENST00000512711 FSHRP23945 695 aa5.65□□□□□ -1.5
PDGFC-208ENST00000512711 NPAS3Q8IXF0 933 aa5.65□□□□□ -1.5
PDGFC-208ENST00000512711 H3BM21 787 aa5.64□□□□□ -1.51
PDGFC-208ENST00000512711 C6orf118Q5T5N4 469 aa5.64□□□□□ -1.51
PDGFC-208ENST00000512711 ZBTB33Q86T24 672 aa5.64□□□□□ -1.51
PDGFC-208ENST00000512711 ADAM32Q8TC27 787 aa5.64□□□□□ -1.51
PDGFC-208ENST00000512711 GPKOWQ92917 476 aaPredicted RBP eCLIP5.64□□□□□ -1.51
PDGFC-208ENST00000512711 GJD4Q96KN9 370 aaPredicted RBP5.64□□□□□ -1.51
PDGFC-208ENST00000512711 MAP4K5Q9Y4K4 846 aa5.64□□□□□ -1.51
PDGFC-208ENST00000512711 ERBB4Q15303 1308 aa5.64□□□□□ -1.51
PDGFC-208ENST00000512711 LOC100996750A0A140TA64 210 aa5.63□□□□□ -1.51
PDGFC-208ENST00000512711 CBLBQ13191 982 aa5.63□□□□□ -1.51
PDGFC-208ENST00000512711 TMEM259Q4ZIN3 620 aa5.63□□□□□ -1.51
PDGFC-208ENST00000512711 PPP1R26Q5T8A7 1209 aaPredicted RBP5.63□□□□□ -1.51
PDGFC-208ENST00000512711 KCTD15Q96SI1 283 aaPredicted RBP5.63□□□□□ -1.51
PDGFC-208ENST00000512711 KRTAP4-6Q9BYQ5 205 aa5.63□□□□□ -1.51
PDGFC-208ENST00000512711 PTK2Q05397 1052 aa5.62□□□□□ -1.51
PDGFC-208ENST00000512711 SNRKQ9NRH2 765 aa5.62□□□□□ -1.51
PDGFC-208ENST00000512711 SCARF1Q14162 830 aa5.61□□□□□ -1.51
PDGFC-208ENST00000512711 INTS6LQ5JSJ4 861 aaKnown RBP5.61□□□□□ -1.51
PDGFC-208ENST00000512711 CCDC116Q8IYX3 515 aa5.61□□□□□ -1.51
PDGFC-208ENST00000512711 TMPRSS4Q9NRS4 437 aa5.61□□□□□ -1.51
PDGFC-208ENST00000512711 ZC3H4Q9UPT8 1303 aaKnown RBP5.6□□□□□ -1.51
PDGFC-208ENST00000512711 BMP2P12643 396 aa5.6□□□□□ -1.51
PDGFC-208ENST00000512711 RAB15P59190 212 aa5.6□□□□□ -1.51
PDGFC-208ENST00000512711 MEIOBQ8N635 442 aa5.6□□□□□ -1.51
PDGFC-208ENST00000512711 AGBL1Q96MI9 1066 aa5.6□□□□□ -1.51
PDGFC-208ENST00000512711 GPSM3Q9Y4H4 160 aa5.6□□□□□ -1.51
PDGFC-208ENST00000512711 EMILIN1Q9Y6C2 1016 aa5.6□□□□□ -1.51
PDGFC-208ENST00000512711 GPR37L1O60883 481 aa5.59□□□□□ -1.51
PDGFC-208ENST00000512711 FBXO45P0C2W1 286 aa5.59□□□□□ -1.51
PDGFC-208ENST00000512711 ADD1P35611 737 aaKnown RBP5.59□□□□□ -1.51
PDGFC-208ENST00000512711 LINC00528Q8N1L1 170 aa5.59□□□□□ -1.51
PDGFC-208ENST00000512711 MTMR14Q8NCE2 650 aa5.59□□□□□ -1.51
PDGFC-208ENST00000512711 SLC10A4Q96EP9 437 aa5.59□□□□□ -1.51
PDGFC-208ENST00000512711 ERVH48-1M5A8F1 160 aa5.58□□□□□ -1.52
PDGFC-208ENST00000512711 Q6ZVU0 165 aa5.58□□□□□ -1.52
PDGFC-208ENST00000512711 DZIP3Q86Y13 1208 aaKnown RBP5.58□□□□□ -1.52
PDGFC-208ENST00000512711 DNMT3LQ9UJW3 386 aa5.58□□□□□ -1.52
PDGFC-208ENST00000512711 SOS2Q07890 1332 aaPredicted RBP5.57□□□□□ -1.52
PDGFC-208ENST00000512711 FIGNL2A6NMB9 653 aa5.57□□□□□ -1.52
PDGFC-208ENST00000512711 LILRA1O75019 489 aa5.57□□□□□ -1.52
PDGFC-208ENST00000512711 GIGYF1O75420 1035 aaPredicted RBP5.57□□□□□ -1.52
PDGFC-208ENST00000512711 KDF1Q8NAX2 398 aaPredicted RBP5.57□□□□□ -1.52
PDGFC-208ENST00000512711 ESPNB1AK53 854 aa5.56□□□□□ -1.52
PDGFC-208ENST00000512711 MAN1A2O60476 641 aa5.56□□□□□ -1.52
PDGFC-208ENST00000512711 SUZ12Q15022 739 aaKnown RBP5.56□□□□□ -1.52
PDGFC-208ENST00000512711 ZNF784Q8NCA9 323 aaPredicted RBP5.56□□□□□ -1.52
PDGFC-208ENST00000512711 BANK1Q8NDB2 785 aa5.56□□□□□ -1.52
PDGFC-208ENST00000512711 TSEN34Q9BSV6 310 aaKnown RBP5.56□□□□□ -1.52
PDGFC-208ENST00000512711 ZNF395Q9H8N7 513 aaPredicted RBP5.56□□□□□ -1.52
PDGFC-208ENST00000512711 ZBBXA8MT70 800 aa5.55□□□□□ -1.52
PDGFC-208ENST00000512711 UPP2O95045 317 aa5.55□□□□□ -1.52
PDGFC-208ENST00000512711 CTSOP43234 321 aaPredicted RBP5.55□□□□□ -1.52
PDGFC-208ENST00000512711 RELBQ01201 579 aa5.55□□□□□ -1.52
PDGFC-208ENST00000512711 PGPEP1Q9NXJ5 209 aa5.55□□□□□ -1.52
PDGFC-208ENST00000512711 CDV3Q9UKY7 258 aaKnown RBP5.55□□□□□ -1.52
PDGFC-208ENST00000512711 PCDHB9Q9Y5E1 797 aa5.55□□□□□ -1.52
PDGFC-208ENST00000512711 TTLL8A6PVC2 850 aa5.54□□□□□ -1.52
PDGFC-208ENST00000512711 SPINT1O43278 529 aa5.54□□□□□ -1.52
PDGFC-208ENST00000512711 INSM2Q96T92 566 aaPredicted RBP5.54□□□□□ -1.52
PDGFC-208ENST00000512711 PPFIA3O75145 1194 aa5.53□□□□□ -1.52
PDGFC-208ENST00000512711 VSIG8P0DPA2 414 aa5.53□□□□□ -1.52
PDGFC-208ENST00000512711 DHX9Q08211 1270 aaKnown RBP5.53□□□□□ -1.52
PDGFC-208ENST00000512711 NBPF20Q3BBV1 942 aa5.53□□□□□ -1.52
PDGFC-208ENST00000512711 PNMA1Q8ND90 353 aa5.53□□□□□ -1.52
PDGFC-208ENST00000512711 GSK3AP49840 483 aa5.52□□□□□ -1.53
PDGFC-208ENST00000512711 KCNMA1Q12791 1236 aa5.52□□□□□ -1.53
PDGFC-208ENST00000512711 TSGA10IPQ3SY00 556 aa5.52□□□□□ -1.53
PDGFC-208ENST00000512711 KCTD17Q8N5Z5 321 aa5.52□□□□□ -1.53
PDGFC-208ENST00000512711 GPR161Q8N6U8 529 aaKnown RBP5.52□□□□□ -1.53
PDGFC-208ENST00000512711 CYLDQ9NQC7 956 aa5.52□□□□□ -1.53
PDGFC-208ENST00000512711 TBC1D2BQ9UPU7 963 aa5.52□□□□□ -1.53
PDGFC-208ENST00000512711 PTSQ03393 145 aa5.51□□□□□ -1.53
PDGFC-208ENST00000512711 NR1H3Q13133 447 aa5.51□□□□□ -1.53
PDGFC-208ENST00000512711 ADH1AP07327 375 aa5.5□□□□□ -1.53
PDGFC-208ENST00000512711 PTGIRP43119 386 aa5.5□□□□□ -1.53
PDGFC-208ENST00000512711 SCTRP47872 440 aa5.5□□□□□ -1.53
PDGFC-208ENST00000512711 IRF5Q13568 498 aa5.5□□□□□ -1.53
PDGFC-208ENST00000512711 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.5□□□□□ -1.53
PDGFC-208ENST00000512711 NDUFB9Q9Y6M9 179 aa5.5□□□□□ -1.53
PDGFC-208ENST00000512711 SEPT12Q8IYM1 358 aa5.49□□□□□ -1.53
PDGFC-208ENST00000512711 CDCA7Q9BWT1 371 aaPredicted RBP5.49□□□□□ -1.53
PDGFC-208ENST00000512711 POLMQ9NP87 494 aaPredicted RBP5.49□□□□□ -1.53
PDGFC-208ENST00000512711 SENP3-EIF4A1A0A087X0R7 540 aa5.48□□□□□ -1.53
PDGFC-208ENST00000512711 SOCS7O14512 581 aa5.48□□□□□ -1.53
PDGFC-208ENST00000512711 FOXD4L5Q5VV16 416 aaPredicted RBP5.48□□□□□ -1.53
PDGFC-208ENST00000512711 CCDC155Q8N6L0 562 aa5.48□□□□□ -1.53
PDGFC-208ENST00000512711 RNF217Q8TC41 542 aa5.48□□□□□ -1.53
PDGFC-208ENST00000512711 GDPD2Q9HCC8 539 aa5.48□□□□□ -1.53
PDGFC-208ENST00000512711 CEP126Q9P2H0 1117 aa5.48□□□□□ -1.53
PDGFC-208ENST00000512711 SLC35F4A4IF30 521 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms