RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 NPAS3Q8IXF0 933 aa15.86■□□□□ 0.13
USP53-206ENST00000510737 LINC00528Q8N1L1 170 aa15.86■□□□□ 0.13
USP53-206ENST00000510737 SLC16A10Q8TF71 515 aa15.86■□□□□ 0.13
USP53-206ENST00000510737 USP17L8P0C7I0 530 aa15.85■□□□□ 0.13
USP53-206ENST00000510737 RFC5P40937 340 aa15.85■□□□□ 0.13
USP53-206ENST00000510737 PPP1R26Q5T8A7 1209 aaPredicted RBP15.83■□□□□ 0.12
USP53-206ENST00000510737 EMILIN1Q9Y6C2 1016 aa15.83■□□□□ 0.12
USP53-206ENST00000510737 ZC3H4Q9UPT8 1303 aaKnown RBP15.83■□□□□ 0.12
USP53-206ENST00000510737 BMP2P12643 396 aa15.82■□□□□ 0.12
USP53-206ENST00000510737 CBLBQ13191 982 aa15.81■□□□□ 0.12
USP53-206ENST00000510737 KCTD15Q96SI1 283 aaPredicted RBP15.81■□□□□ 0.12
USP53-206ENST00000510737 LORP23490 312 aaPredicted RBP15.8■□□□□ 0.12
USP53-206ENST00000510737 INSM1Q01101 510 aaPredicted RBP15.8■□□□□ 0.12
USP53-206ENST00000510737 SOS2Q07890 1332 aaPredicted RBP15.79■□□□□ 0.12
USP53-206ENST00000510737 ZBTB33Q86T24 672 aa15.79■□□□□ 0.12
USP53-206ENST00000510737 ADAM32Q8TC27 787 aa15.79■□□□□ 0.12
USP53-206ENST00000510737 IRF7Q92985 503 aa15.79■□□□□ 0.12
USP53-206ENST00000510737 SLC10A4Q96EP9 437 aa15.79■□□□□ 0.12
USP53-206ENST00000510737 DNMT3LQ9UJW3 386 aa15.79■□□□□ 0.12
USP53-206ENST00000510737 MAN1A2O60476 641 aa15.77■□□□□ 0.12
USP53-206ENST00000510737 PTK2Q05397 1052 aa15.77■□□□□ 0.12
USP53-206ENST00000510737 NEUROD2Q15784 382 aa15.77■□□□□ 0.12
USP53-206ENST00000510737 INTS6LQ5JSJ4 861 aaKnown RBP15.77■□□□□ 0.12
USP53-206ENST00000510737 IL27Q8NEV9 243 aa15.77■□□□□ 0.12
USP53-206ENST00000510737 TRIM34Q9BYJ4 488 aa15.77■□□□□ 0.12
USP53-206ENST00000510737 GOPCQ9HD26 462 aa15.77■□□□□ 0.12
USP53-206ENST00000510737 Q6ZVU0 165 aa15.76■□□□□ 0.11
USP53-206ENST00000510737 STK17AQ9UEE5 414 aa15.76■□□□□ 0.11
USP53-206ENST00000510737 GPSM3Q9Y4H4 160 aa15.76■□□□□ 0.11
USP53-206ENST00000510737 UPP2O95045 317 aa15.75■□□□□ 0.11
USP53-206ENST00000510737 TSEN34Q9BSV6 310 aaKnown RBP15.75■□□□□ 0.11
USP53-206ENST00000510737 CDV3Q9UKY7 258 aaKnown RBP15.72■□□□□ 0.11
USP53-206ENST00000510737 BRPF1P55201 1214 aaPredicted RBP15.71■□□□□ 0.11
USP53-206ENST00000510737 PCMTD1Q96MG8 357 aaPredicted RBP15.71■□□□□ 0.11
USP53-206ENST00000510737 PGPEP1Q9NXJ5 209 aa15.71■□□□□ 0.11
USP53-206ENST00000510737 PPFIA3O75145 1194 aa15.69■□□□□ 0.1
USP53-206ENST00000510737 VSIG8P0DPA2 414 aa15.69■□□□□ 0.1
USP53-206ENST00000510737 TMPRSS4Q9NRS4 437 aa15.69■□□□□ 0.1
USP53-206ENST00000510737 AGBL1Q96MI9 1066 aa15.68■□□□□ 0.1
USP53-206ENST00000510737 GJD4Q96KN9 370 aaPredicted RBP15.67■□□□□ 0.1
USP53-206ENST00000510737 TTLL8A6PVC2 850 aa15.66■□□□□ 0.1
USP53-206ENST00000510737 SPINT1O43278 529 aa15.66■□□□□ 0.1
USP53-206ENST00000510737 FIGNL2A6NMB9 653 aa15.65■□□□□ 0.1
USP53-206ENST00000510737 DHX9Q08211 1270 aaKnown RBP15.65■□□□□ 0.1
USP53-206ENST00000510737 TMEM259Q4ZIN3 620 aa15.65■□□□□ 0.1
USP53-206ENST00000510737 RAB15P59190 212 aa15.64■□□□□ 0.09
USP53-206ENST00000510737 ZNF784Q8NCA9 323 aaPredicted RBP15.63■□□□□ 0.09
USP53-206ENST00000510737 ESPNB1AK53 854 aa15.62■□□□□ 0.09
USP53-206ENST00000510737 NBPF20Q3BBV1 942 aa15.62■□□□□ 0.09
USP53-206ENST00000510737 ERVH48-1M5A8F1 160 aa15.61■□□□□ 0.09
USP53-206ENST00000510737 LILRA1O75019 489 aa15.61■□□□□ 0.09
USP53-206ENST00000510737 ADD1P35611 737 aaKnown RBP15.61■□□□□ 0.09
USP53-206ENST00000510737 CTSOP43234 321 aaPredicted RBP15.61■□□□□ 0.09
USP53-206ENST00000510737 RELBQ01201 579 aa15.61■□□□□ 0.09
USP53-206ENST00000510737 DZIP3Q86Y13 1208 aaKnown RBP15.61■□□□□ 0.09
USP53-206ENST00000510737 ZSCAN1Q8NBB4 408 aa15.61■□□□□ 0.09
USP53-206ENST00000510737 PNMA1Q8ND90 353 aa15.61■□□□□ 0.09
USP53-206ENST00000510737 PTSQ03393 145 aa15.6■□□□□ 0.09
USP53-206ENST00000510737 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.6■□□□□ 0.09
USP53-206ENST00000510737 KDF1Q8NAX2 398 aaPredicted RBP15.6■□□□□ 0.09
USP53-206ENST00000510737 INSM2Q96T92 566 aaPredicted RBP15.59■□□□□ 0.09
USP53-206ENST00000510737 ZNF395Q9H8N7 513 aaPredicted RBP15.57■□□□□ 0.08
USP53-206ENST00000510737 GPR37L1O60883 481 aa15.56■□□□□ 0.08
USP53-206ENST00000510737 FBXO45P0C2W1 286 aa15.56■□□□□ 0.08
USP53-206ENST00000510737 GPR161Q8N6U8 529 aaKnown RBP15.56■□□□□ 0.08
USP53-206ENST00000510737 ZBBXA8MT70 800 aa15.54■□□□□ 0.08
USP53-206ENST00000510737 ADH1AP07327 375 aa15.52■□□□□ 0.08
USP53-206ENST00000510737 KRT76Q01546 638 aa15.52■□□□□ 0.08
USP53-206ENST00000510737 GIGYF1O75420 1035 aaPredicted RBP15.51■□□□□ 0.07
USP53-206ENST00000510737 CCDC155Q8N6L0 562 aa15.51■□□□□ 0.07
USP53-206ENST00000510737 RNF217Q8TC41 542 aa15.51■□□□□ 0.07
USP53-206ENST00000510737 SLC35F4A4IF30 521 aa15.5■□□□□ 0.07
USP53-206ENST00000510737 FOXD4L5Q5VV16 416 aaPredicted RBP15.5■□□□□ 0.07
USP53-206ENST00000510737 MTMR14Q8NCE2 650 aa15.5■□□□□ 0.07
USP53-206ENST00000510737 CYLDQ9NQC7 956 aa15.5■□□□□ 0.07
USP53-206ENST00000510737 POLMQ9NP87 494 aaPredicted RBP15.49■□□□□ 0.07
USP53-206ENST00000510737 PCDHB9Q9Y5E1 797 aa15.49■□□□□ 0.07
USP53-206ENST00000510737 TPRNQ4KMQ1 711 aa15.48■□□□□ 0.07
USP53-206ENST00000510737 PTGIRP43119 386 aa15.47■□□□□ 0.07
USP53-206ENST00000510737 SNRKQ9NRH2 765 aa15.47■□□□□ 0.07
USP53-206ENST00000510737 SENP3-EIF4A1A0A087X0R7 540 aa15.46■□□□□ 0.07
USP53-206ENST00000510737 SEPT12Q8IYM1 358 aa15.46■□□□□ 0.07
USP53-206ENST00000510737 BANK1Q8NDB2 785 aa15.44■□□□□ 0.06
USP53-206ENST00000510737 NANOS1Q8WY41 292 aaKnown RBP15.44■□□□□ 0.06
USP53-206ENST00000510737 FAM181BA6NEQ2 426 aa15.43■□□□□ 0.06
USP53-206ENST00000510737 NR1H3Q13133 447 aa15.41■□□□□ 0.06
USP53-206ENST00000510737 ITGA6P23229 1130 aa15.4■□□□□ 0.06
USP53-206ENST00000510737 RNFT1Q5M7Z0 435 aa15.4■□□□□ 0.06
USP53-206ENST00000510737 CNTNAP3BQ96NU0 1288 aa15.39■□□□□ 0.05
USP53-206ENST00000510737 CNTNAP3Q9BZ76 1288 aa15.39■□□□□ 0.05
USP53-206ENST00000510737 SOCS7O14512 581 aa15.38■□□□□ 0.05
USP53-206ENST00000510737 COL25A1Q9BXS0 654 aaPredicted RBP15.38■□□□□ 0.05
USP53-206ENST00000510737 SCTRP47872 440 aa15.37■□□□□ 0.05
USP53-206ENST00000510737 VWA5B2Q8N398 1253 aa15.37■□□□□ 0.05
USP53-206ENST00000510737 ERVK-9P63128 1117 aa15.36■□□□□ 0.05
USP53-206ENST00000510737 NDUFB9Q9Y6M9 179 aa15.36■□□□□ 0.05
USP53-206ENST00000510737 CUEDC1Q9NWM3 386 aaPredicted RBP15.35■□□□□ 0.05
USP53-206ENST00000510737 ATP5J2-PTCD1G3V325 749 aa15.34■□□□□ 0.05
USP53-206ENST00000510737 RNF144AP50876 292 aaPredicted RBP15.33■□□□□ 0.04
USP53-206ENST00000510737 LYSMD3Q7Z3D4 306 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms