RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 ZRANB1Q9UGI0 708 aa12.5□□□□□ -0.41
NUP54-207ENST00000508583 ATRNO75882 1429 aa12.5□□□□□ -0.41
NUP54-207ENST00000508583 LMO7Q8WWI1 1683 aa12.5□□□□□ -0.41
NUP54-207ENST00000508583 ZBTB7CA1YPR0 619 aa12.49□□□□□ -0.41
NUP54-207ENST00000508583 CHRNA2Q15822 529 aa12.49□□□□□ -0.41
NUP54-207ENST00000508583 VPS72Q15906 364 aa12.49□□□□□ -0.41
NUP54-207ENST00000508583 LTN1O94822 1766 aa12.48□□□□□ -0.41
NUP54-207ENST00000508583 ANKRD26Q9UPS8 1709 aa12.48□□□□□ -0.41
NUP54-207ENST00000508583 GLI3P10071 1580 aa12.48□□□□□ -0.41
NUP54-207ENST00000508583 CDK12Q9NYV4 1490 aaPredicted RBP12.48□□□□□ -0.41
NUP54-207ENST00000508583 RTL1A6NKG5 1358 aa12.48□□□□□ -0.41
NUP54-207ENST00000508583 KIF24Q5T7B8 1368 aa12.48□□□□□ -0.41
NUP54-207ENST00000508583 CCDC9Q9Y3X0 531 aaKnown RBP12.48□□□□□ -0.41
NUP54-207ENST00000508583 BLMP54132 1417 aaPredicted RBP12.47□□□□□ -0.41
NUP54-207ENST00000508583 AMPHP49418 695 aa12.47□□□□□ -0.41
NUP54-207ENST00000508583 GJD4Q96KN9 370 aaPredicted RBP12.47□□□□□ -0.41
NUP54-207ENST00000508583 COL18A1P39060 1754 aa12.46□□□□□ -0.41
NUP54-207ENST00000508583 NPC1L1Q9UHC9 1359 aa12.46□□□□□ -0.41
NUP54-207ENST00000508583 CAMTA1Q9Y6Y1 1673 aa12.46□□□□□ -0.41
NUP54-207ENST00000508583 COL5A2P05997 1499 aaPredicted RBP12.46□□□□□ -0.42
NUP54-207ENST00000508583 RGPD5Q99666 1765 aa12.46□□□□□ -0.42
NUP54-207ENST00000508583 RGS12O14924 1447 aa12.45□□□□□ -0.42
NUP54-207ENST00000508583 CSB-PGBD3P0DP91 1061 aa12.45□□□□□ -0.42
NUP54-207ENST00000508583 MORC1Q86VD1 984 aa12.45□□□□□ -0.42
NUP54-207ENST00000508583 STRN4Q9NRL3 753 aa12.45□□□□□ -0.42
NUP54-207ENST00000508583 SMG6Q86US8 1419 aaKnown RBP12.45□□□□□ -0.42
NUP54-207ENST00000508583 IP6K1Q92551 441 aa12.44□□□□□ -0.42
NUP54-207ENST00000508583 THRAP3Q9Y2W1 955 aaKnown RBP12.44□□□□□ -0.42
NUP54-207ENST00000508583 CRB1P82279 1406 aa12.44□□□□□ -0.42
NUP54-207ENST00000508583 FLT4P35916 1363 aa12.43□□□□□ -0.42
NUP54-207ENST00000508583 MAP3K19Q56UN5 1328 aa12.43□□□□□ -0.42
NUP54-207ENST00000508583 SPATA31A5Q5VU36 1347 aa12.43□□□□□ -0.42
NUP54-207ENST00000508583 SPATA31A7Q8IWB4 1347 aa12.43□□□□□ -0.42
NUP54-207ENST00000508583 WDR17Q8IZU2 1322 aa12.43□□□□□ -0.42
NUP54-207ENST00000508583 PER1O15534 1290 aaPredicted RBP12.43□□□□□ -0.42
NUP54-207ENST00000508583 AMER1Q5JTC6 1135 aaPredicted RBP12.43□□□□□ -0.42
NUP54-207ENST00000508583 TOM1L2Q6ZVM7 507 aa12.43□□□□□ -0.42
NUP54-207ENST00000508583 ERBB3P21860 1342 aa12.42□□□□□ -0.42
NUP54-207ENST00000508583 FAM208AQ9UK61 1670 aaKnown RBP12.42□□□□□ -0.42
NUP54-207ENST00000508583 TCP11L2Q8N4U5 519 aa12.42□□□□□ -0.42
NUP54-207ENST00000508583 SPATA31A1Q5TZJ5 1347 aa12.41□□□□□ -0.42
NUP54-207ENST00000508583 HOXC9P31274 260 aa12.41□□□□□ -0.42
NUP54-207ENST00000508583 RRS1Q15050 365 aaKnown RBP12.41□□□□□ -0.42
NUP54-207ENST00000508583 LARP1Q6PKG0 1096 aaKnown RBP12.41□□□□□ -0.42
NUP54-207ENST00000508583 CDCA7Q9BWT1 371 aaPredicted RBP12.41□□□□□ -0.42
NUP54-207ENST00000508583 MAP2P11137 1827 aaKnown RBP12.4□□□□□ -0.42
NUP54-207ENST00000508583 BRWD3Q6RI45 1802 aa12.4□□□□□ -0.42
NUP54-207ENST00000508583 A0A0G2JS52 829 aa12.4□□□□□ -0.42
NUP54-207ENST00000508583 PPM1GO15355 546 aaPredicted RBP12.4□□□□□ -0.42
NUP54-207ENST00000508583 MYT1Q01538 1121 aa12.4□□□□□ -0.42
NUP54-207ENST00000508583 BARGINQ6ZT62 677 aa12.4□□□□□ -0.42
NUP54-207ENST00000508583 ANKRD24Q8TF21 1146 aa12.4□□□□□ -0.42
NUP54-207ENST00000508583 AXIN2Q9Y2T1 843 aa12.4□□□□□ -0.42
NUP54-207ENST00000508583 INSRP06213 1382 aa12.4□□□□□ -0.42
NUP54-207ENST00000508583 WNK3Q9BYP7 1800 aa12.39□□□□□ -0.43
NUP54-207ENST00000508583 THSD7AQ9UPZ6 1657 aa12.39□□□□□ -0.43
NUP54-207ENST00000508583 ONECUT3O60422 494 aaPredicted RBP12.39□□□□□ -0.43
NUP54-207ENST00000508583 FBLN1P23142 703 aa12.39□□□□□ -0.43
NUP54-207ENST00000508583 TNNT2P45379 298 aaPredicted RBP12.39□□□□□ -0.43
NUP54-207ENST00000508583 CC2D1BQ5T0F9 858 aaKnown RBP12.39□□□□□ -0.43
NUP54-207ENST00000508583 CARD10Q9BWT7 1032 aa12.39□□□□□ -0.43
NUP54-207ENST00000508583 USP35Q9P2H5 1018 aa12.39□□□□□ -0.43
NUP54-207ENST00000508583 PEAK1Q9H792 1746 aa12.38□□□□□ -0.43
NUP54-207ENST00000508583 ZNF316A6NFI3 1004 aaPredicted RBP12.38□□□□□ -0.43
NUP54-207ENST00000508583 FAM98CQ17RN3 349 aaKnown RBP12.38□□□□□ -0.43
NUP54-207ENST00000508583 NLRP2Q9NX02 1062 aa12.38□□□□□ -0.43
NUP54-207ENST00000508583 SOCS7O14512 581 aa12.37□□□□□ -0.43
NUP54-207ENST00000508583 SEPT12Q8IYM1 358 aa12.37□□□□□ -0.43
NUP54-207ENST00000508583 POLKQ9UBT6 870 aa12.37□□□□□ -0.43
NUP54-207ENST00000508583 EMILIN1Q9Y6C2 1016 aa12.37□□□□□ -0.43
NUP54-207ENST00000508583 DDX10Q13206 875 aaKnown RBP12.36□□□□□ -0.43
NUP54-207ENST00000508583 LTV1Q96GA3 475 aaPredicted RBP12.36□□□□□ -0.43
NUP54-207ENST00000508583 HSP90AB2PQ58FF8 381 aa12.35□□□□□ -0.43
NUP54-207ENST00000508583 LRRC37A3O60309 1634 aa12.34□□□□□ -0.43
NUP54-207ENST00000508583 RGPD2P0DJD1 1756 aa12.34□□□□□ -0.43
NUP54-207ENST00000508583 PDE3BQ13370 1112 aa12.34□□□□□ -0.43
NUP54-207ENST00000508583 PARP4Q9UKK3 1724 aaKnown RBP12.34□□□□□ -0.43
NUP54-207ENST00000508583 IL2RBP14784 551 aa12.33□□□□□ -0.44
NUP54-207ENST00000508583 RALBP1Q15311 655 aa12.33□□□□□ -0.44
NUP54-207ENST00000508583 KRT27Q7Z3Y8 459 aa12.33□□□□□ -0.44
NUP54-207ENST00000508583 CFAP53Q96M91 514 aa12.33□□□□□ -0.44
NUP54-207ENST00000508583 EP400Q96L91 3159 aa12.32□□□□□ -0.44
NUP54-207ENST00000508583 PLEKHG2Q9H7P9 1386 aa12.32□□□□□ -0.44
NUP54-207ENST00000508583 MTHFSP49914 203 aa12.32□□□□□ -0.44
NUP54-207ENST00000508583 CNGB1Q14028 1251 aaPredicted RBP12.32□□□□□ -0.44
NUP54-207ENST00000508583 DDB1Q16531 1140 aa12.32□□□□□ -0.44
NUP54-207ENST00000508583 RAPGEF4Q8WZA2 1011 aa12.32□□□□□ -0.44
NUP54-207ENST00000508583 PARD3Q8TEW0 1356 aa12.3□□□□□ -0.44
NUP54-207ENST00000508583 DISP2A7MBM2 1401 aa12.3□□□□□ -0.44
NUP54-207ENST00000508583 TNS2Q63HR2 1409 aa12.3□□□□□ -0.44
NUP54-207ENST00000508583 EXOC5O00471 708 aa12.3□□□□□ -0.44
NUP54-207ENST00000508583 EIF4A2Q14240 407 aaKnown RBP12.3□□□□□ -0.44
NUP54-207ENST00000508583 TATP17735 454 aaPredicted RBP12.29□□□□□ -0.44
NUP54-207ENST00000508583 NBPF6Q5VWK0 638 aa12.29□□□□□ -0.44
NUP54-207ENST00000508583 FAM196AQ6ZSG2 479 aa12.29□□□□□ -0.44
NUP54-207ENST00000508583 CCDC125Q86Z20 511 aa12.29□□□□□ -0.44
NUP54-207ENST00000508583 NBPF4Q96M43 638 aa12.29□□□□□ -0.44
NUP54-207ENST00000508583 DIAPH1O60610 1272 aaKnown RBP12.28□□□□□ -0.44
NUP54-207ENST00000508583 FAM182BQ5T319 152 aa12.28□□□□□ -0.44
NUP54-207ENST00000508583 NUDCQ9Y266 331 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms