RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 FAM83GA6ND36 823 aa11.49□□□□□ -0.57
PDGFC-205ENST00000506880 NUTM2BA6NNL0 878 aaPredicted RBP11.49□□□□□ -0.57
PDGFC-205ENST00000506880 NUTM2EB1AL46 878 aaPredicted RBP11.49□□□□□ -0.57
PDGFC-205ENST00000506880 NUTM2AQ8IVF1 878 aaPredicted RBP11.49□□□□□ -0.57
PDGFC-205ENST00000506880 USP21Q9UK80 565 aa11.49□□□□□ -0.57
PDGFC-205ENST00000506880 AFF2P51816 1311 aa11.49□□□□□ -0.57
PDGFC-205ENST00000506880 COL5A2P05997 1499 aaPredicted RBP11.49□□□□□ -0.57
PDGFC-205ENST00000506880 RBM6P78332 1123 aaKnown RBP11.48□□□□□ -0.57
PDGFC-205ENST00000506880 MORC1Q86VD1 984 aa11.48□□□□□ -0.57
PDGFC-205ENST00000506880 C8orf37Q96NL8 207 aa11.48□□□□□ -0.57
PDGFC-205ENST00000506880 GGNBP2Q9H3C7 697 aa11.48□□□□□ -0.57
PDGFC-205ENST00000506880 CAMTA1Q9Y6Y1 1673 aa11.47□□□□□ -0.57
PDGFC-205ENST00000506880 CRB1P82279 1406 aa11.47□□□□□ -0.57
PDGFC-205ENST00000506880 WDR17Q8IZU2 1322 aa11.47□□□□□ -0.57
PDGFC-205ENST00000506880 ONECUT3O60422 494 aaPredicted RBP11.47□□□□□ -0.57
PDGFC-205ENST00000506880 ADAMTS2O95450 1211 aa11.47□□□□□ -0.57
PDGFC-205ENST00000506880 BARGINQ6ZT62 677 aa11.47□□□□□ -0.57
PDGFC-205ENST00000506880 CABLES1Q8TDN4 633 aa11.47□□□□□ -0.57
PDGFC-205ENST00000506880 PARD3Q8TEW0 1356 aa11.46□□□□□ -0.57
PDGFC-205ENST00000506880 ERBB3P21860 1342 aa11.46□□□□□ -0.57
PDGFC-205ENST00000506880 MAP3K19Q56UN5 1328 aa11.46□□□□□ -0.57
PDGFC-205ENST00000506880 BTG4Q9NY30 223 aa11.46□□□□□ -0.57
PDGFC-205ENST00000506880 NCAPD2Q15021 1401 aa11.45□□□□□ -0.58
PDGFC-205ENST00000506880 SPATA31A5Q5VU36 1347 aa11.45□□□□□ -0.58
PDGFC-205ENST00000506880 SPATA31A7Q8IWB4 1347 aa11.45□□□□□ -0.58
PDGFC-205ENST00000506880 AMPHP49418 695 aa11.45□□□□□ -0.58
PDGFC-205ENST00000506880 EVA1CP58658 441 aa11.45□□□□□ -0.58
PDGFC-205ENST00000506880 ZC3H6P61129 1189 aaKnown RBP11.45□□□□□ -0.58
PDGFC-205ENST00000506880 NUTM2GQ5VZR2 741 aa11.45□□□□□ -0.58
PDGFC-205ENST00000506880 CARD10Q9BWT7 1032 aa11.45□□□□□ -0.58
PDGFC-205ENST00000506880 RGPD5Q99666 1765 aa11.45□□□□□ -0.58
PDGFC-205ENST00000506880 HOXC9P31274 260 aa11.44□□□□□ -0.58
PDGFC-205ENST00000506880 GJD4Q96KN9 370 aaPredicted RBP11.44□□□□□ -0.58
PDGFC-205ENST00000506880 QTRT2Q9H974 415 aaKnown RBP11.44□□□□□ -0.58
PDGFC-205ENST00000506880 POLKQ9UBT6 870 aa11.44□□□□□ -0.58
PDGFC-205ENST00000506880 WNK3Q9BYP7 1800 aa11.44□□□□□ -0.58
PDGFC-205ENST00000506880 SPATA31A1Q5TZJ5 1347 aa11.43□□□□□ -0.58
PDGFC-205ENST00000506880 RXRBP28702 533 aa11.43□□□□□ -0.58
PDGFC-205ENST00000506880 CFAP53Q96M91 514 aa11.43□□□□□ -0.58
PDGFC-205ENST00000506880 PARP4Q9UKK3 1724 aaKnown RBP11.43□□□□□ -0.58
PDGFC-205ENST00000506880 TCP11L2Q8N4U5 519 aa11.42□□□□□ -0.58
PDGFC-205ENST00000506880 THSD7AQ9UPZ6 1657 aa11.42□□□□□ -0.58
PDGFC-205ENST00000506880 PEAK1Q9H792 1746 aa11.41□□□□□ -0.58
PDGFC-205ENST00000506880 DDX10Q13206 875 aaKnown RBP11.41□□□□□ -0.58
PDGFC-205ENST00000506880 RGS17Q9UGC6 210 aaPredicted RBP11.41□□□□□ -0.58
PDGFC-205ENST00000506880 ZRANB1Q9UGI0 708 aa11.41□□□□□ -0.58
PDGFC-205ENST00000506880 BCL9O00512 1426 aa11.41□□□□□ -0.58
PDGFC-205ENST00000506880 GLI3P10071 1580 aa11.41□□□□□ -0.58
PDGFC-205ENST00000506880 PPP4R3CPQ6ZMV5 832 aa11.4□□□□□ -0.58
PDGFC-205ENST00000506880 ANKRD24Q8TF21 1146 aa11.4□□□□□ -0.58
PDGFC-205ENST00000506880 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.4□□□□□ -0.58
PDGFC-205ENST00000506880 MYBBP1AQ9BQG0 1328 aaKnown RBP11.39□□□□□ -0.59
PDGFC-205ENST00000506880 CHRNA2Q15822 529 aa11.39□□□□□ -0.59
PDGFC-205ENST00000506880 PNNQ9H307 717 aaKnown RBP11.39□□□□□ -0.59
PDGFC-205ENST00000506880 NUDCQ9Y266 331 aa11.39□□□□□ -0.59
PDGFC-205ENST00000506880 AXIN2Q9Y2T1 843 aa11.39□□□□□ -0.59
PDGFC-205ENST00000506880 KDRP35968 1356 aa11.39□□□□□ -0.59
PDGFC-205ENST00000506880 KAT6BQ8WYB5 2073 aa11.39□□□□□ -0.59
PDGFC-205ENST00000506880 RGPD1P0DJD0 1748 aa11.38□□□□□ -0.59
PDGFC-205ENST00000506880 DISP2A7MBM2 1401 aa11.38□□□□□ -0.59
PDGFC-205ENST00000506880 CSB-PGBD3P0DP91 1061 aa11.38□□□□□ -0.59
PDGFC-205ENST00000506880 HMGB2P26583 209 aaKnown RBP11.38□□□□□ -0.59
PDGFC-205ENST00000506880 RRS1Q15050 365 aaKnown RBP11.38□□□□□ -0.59
PDGFC-205ENST00000506880 CC2D1BQ5T0F9 858 aaKnown RBP11.38□□□□□ -0.59
PDGFC-205ENST00000506880 TOM1L2Q6ZVM7 507 aa11.38□□□□□ -0.59
PDGFC-205ENST00000506880 IGSF1Q8N6C5 1336 aa11.37□□□□□ -0.59
PDGFC-205ENST00000506880 MTHFSP49914 203 aa11.37□□□□□ -0.59
PDGFC-205ENST00000506880 PRKRIP1Q9H875 184 aaPredicted RBP11.37□□□□□ -0.59
PDGFC-205ENST00000506880 ANP32CO43423 234 aa11.36□□□□□ -0.59
PDGFC-205ENST00000506880 DIAPH1O60610 1272 aaKnown RBP11.36□□□□□ -0.59
PDGFC-205ENST00000506880 PPP2R1AP30153 589 aa11.36□□□□□ -0.59
PDGFC-205ENST00000506880 LARP1Q6PKG0 1096 aaKnown RBP11.36□□□□□ -0.59
PDGFC-205ENST00000506880 EMILIN1Q9Y6C2 1016 aa11.36□□□□□ -0.59
PDGFC-205ENST00000506880 OVOS2A0A0G2JMS6 1433 aa11.35□□□□□ -0.59
PDGFC-205ENST00000506880 TNS2Q63HR2 1409 aa11.35□□□□□ -0.59
PDGFC-205ENST00000506880 PKD1L3Q7Z443 1732 aa11.35□□□□□ -0.59
PDGFC-205ENST00000506880 SOX12O15370 315 aa11.35□□□□□ -0.59
PDGFC-205ENST00000506880 IL2RBP14784 551 aa11.35□□□□□ -0.59
PDGFC-205ENST00000506880 HSP90AB2PQ58FF8 381 aa11.35□□□□□ -0.59
PDGFC-205ENST00000506880 POTEAQ6S8J7 498 aa11.35□□□□□ -0.59
PDGFC-205ENST00000506880 CCDC125Q86Z20 511 aa11.35□□□□□ -0.59
PDGFC-205ENST00000506880 STRN4Q9NRL3 753 aa11.35□□□□□ -0.59
PDGFC-205ENST00000506880 CCDC9Q9Y3X0 531 aaKnown RBP11.35□□□□□ -0.59
PDGFC-205ENST00000506880 COL3A1P02461 1466 aaPredicted RBP11.35□□□□□ -0.59
PDGFC-205ENST00000506880 IL13P35225 146 aa11.34□□□□□ -0.59
PDGFC-205ENST00000506880 EIF4A2Q14240 407 aaKnown RBP11.34□□□□□ -0.59
PDGFC-205ENST00000506880 AMOTQ4VCS5 1084 aa11.34□□□□□ -0.59
PDGFC-205ENST00000506880 RAPGEF4Q8WZA2 1011 aa11.34□□□□□ -0.59
PDGFC-205ENST00000506880 NLRP2Q9NX02 1062 aa11.34□□□□□ -0.59
PDGFC-205ENST00000506880 LRRC37A3O60309 1634 aa11.33□□□□□ -0.6
PDGFC-205ENST00000506880 RGPD2P0DJD1 1756 aa11.33□□□□□ -0.6
PDGFC-205ENST00000506880 RGS12O14924 1447 aa11.33□□□□□ -0.6
PDGFC-205ENST00000506880 EXOC5O00471 708 aa11.32□□□□□ -0.6
PDGFC-205ENST00000506880 PPM1GO15355 546 aaPredicted RBP11.32□□□□□ -0.6
PDGFC-205ENST00000506880 FCHSD2O94868 740 aa11.32□□□□□ -0.6
PDGFC-205ENST00000506880 TATP17735 454 aaPredicted RBP11.32□□□□□ -0.6
PDGFC-205ENST00000506880 DDB1Q16531 1140 aa11.32□□□□□ -0.6
PDGFC-205ENST00000506880 BRWD3Q6RI45 1802 aa11.32□□□□□ -0.6
PDGFC-205ENST00000506880 ZBTB7CA1YPR0 619 aa11.31□□□□□ -0.6
PDGFC-205ENST00000506880 HSP90AB1P08238 724 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms