RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 CRB1P82279 1406 aa23■■□□□ 1.27
SNCA-209ENST00000506244 CARD14Q9BXL6 1004 aa23■■□□□ 1.27
SNCA-209ENST00000506244 A0A0G2JS52 829 aa22.99■■□□□ 1.27
SNCA-209ENST00000506244 MYT1Q01538 1121 aa22.99■■□□□ 1.27
SNCA-209ENST00000506244 GGNBP2Q9H3C7 697 aa22.99■■□□□ 1.27
SNCA-209ENST00000506244 THSD7AQ9UPZ6 1657 aa22.98■■□□□ 1.27
SNCA-209ENST00000506244 C11orf95C9JLR9 678 aaPredicted RBP22.98■■□□□ 1.27
SNCA-209ENST00000506244 ONECUT3O60422 494 aaPredicted RBP22.98■■□□□ 1.27
SNCA-209ENST00000506244 FAM98CQ17RN3 349 aaKnown RBP22.98■■□□□ 1.27
SNCA-209ENST00000506244 BLMP54132 1417 aaPredicted RBP22.98■■□□□ 1.27
SNCA-209ENST00000506244 LARP1Q6PKG0 1096 aaKnown RBP22.97■■□□□ 1.27
SNCA-209ENST00000506244 SEPT12Q8IYM1 358 aa22.97■■□□□ 1.27
SNCA-209ENST00000506244 WDR17Q8IZU2 1322 aa22.97■■□□□ 1.27
SNCA-209ENST00000506244 THRAP3Q9Y2W1 955 aaKnown RBP22.96■■□□□ 1.27
SNCA-209ENST00000506244 RTL1A6NKG5 1358 aa22.96■■□□□ 1.27
SNCA-209ENST00000506244 ANKRD26Q9UPS8 1709 aa22.96■■□□□ 1.27
SNCA-209ENST00000506244 NSD2O96028 1365 aa22.95■■□□□ 1.26
SNCA-209ENST00000506244 TCP11L2Q8N4U5 519 aa22.95■■□□□ 1.26
SNCA-209ENST00000506244 RGPD5Q99666 1765 aa22.95■■□□□ 1.26
SNCA-209ENST00000506244 PANK3Q9H999 370 aa22.95■■□□□ 1.26
SNCA-209ENST00000506244 CCDC7Q96M83 1385 aa22.94■■□□□ 1.26
SNCA-209ENST00000506244 CSB-PGBD3P0DP91 1061 aa22.94■■□□□ 1.26
SNCA-209ENST00000506244 BARGINQ6ZT62 677 aa22.94■■□□□ 1.26
SNCA-209ENST00000506244 TOM1L2Q6ZVM7 507 aa22.94■■□□□ 1.26
SNCA-209ENST00000506244 USP35Q9P2H5 1018 aa22.94■■□□□ 1.26
SNCA-209ENST00000506244 AXIN2Q9Y2T1 843 aa22.94■■□□□ 1.26
SNCA-209ENST00000506244 BRWD3Q6RI45 1802 aa22.93■■□□□ 1.26
SNCA-209ENST00000506244 ERBB3P21860 1342 aa22.92■■□□□ 1.26
SNCA-209ENST00000506244 FAM208AQ9UK61 1670 aaKnown RBP22.92■■□□□ 1.26
SNCA-209ENST00000506244 KIF24Q5T7B8 1368 aa22.91■■□□□ 1.26
SNCA-209ENST00000506244 MAP3K19Q56UN5 1328 aa22.91■■□□□ 1.26
SNCA-209ENST00000506244 AMPHP49418 695 aa22.9■■□□□ 1.26
SNCA-209ENST00000506244 KRT27Q7Z3Y8 459 aa22.9■■□□□ 1.26
SNCA-209ENST00000506244 IP6K1Q92551 441 aa22.9■■□□□ 1.26
SNCA-209ENST00000506244 KNSTRNQ9Y448 316 aa22.9■■□□□ 1.26
SNCA-209ENST00000506244 WNK3Q9BYP7 1800 aa22.89■■□□□ 1.26
SNCA-209ENST00000506244 PARP4Q9UKK3 1724 aaKnown RBP22.88■■□□□ 1.25
SNCA-209ENST00000506244 WASHC2AQ641Q2 1341 aa22.88■■□□□ 1.25
SNCA-209ENST00000506244 ZEB1P37275 1124 aaPredicted RBP22.88■■□□□ 1.25
SNCA-209ENST00000506244 CARD10Q9BWT7 1032 aa22.88■■□□□ 1.25
SNCA-209ENST00000506244 ANKRD24Q8TF21 1146 aa22.87■■□□□ 1.25
SNCA-209ENST00000506244 CDCA7Q9BWT1 371 aaPredicted RBP22.87■■□□□ 1.25
SNCA-209ENST00000506244 SMG6Q86US8 1419 aaKnown RBP22.87■■□□□ 1.25
SNCA-209ENST00000506244 FLT4P35916 1363 aa22.87■■□□□ 1.25
SNCA-209ENST00000506244 HOXC9P31274 260 aa22.86■■□□□ 1.25
SNCA-209ENST00000506244 RRS1Q15050 365 aaKnown RBP22.86■■□□□ 1.25
SNCA-209ENST00000506244 UPF1Q92900 1129 aaKnown RBP eCLIP22.86■■□□□ 1.25
SNCA-209ENST00000506244 LRRC37A3O60309 1634 aa22.83■■□□□ 1.25
SNCA-209ENST00000506244 NLRP2Q9NX02 1062 aa22.83■■□□□ 1.25
SNCA-209ENST00000506244 FBLN1P23142 703 aa22.82■■□□□ 1.24
SNCA-209ENST00000506244 PEAK1Q9H792 1746 aa22.82■■□□□ 1.24
SNCA-209ENST00000506244 INSRP06213 1382 aa22.81■■□□□ 1.24
SNCA-209ENST00000506244 PDE3BQ13370 1112 aa22.81■■□□□ 1.24
SNCA-209ENST00000506244 DISP2A7MBM2 1401 aa22.81■■□□□ 1.24
SNCA-209ENST00000506244 CCDC125Q86Z20 511 aa22.8■■□□□ 1.24
SNCA-209ENST00000506244 MORC1Q86VD1 984 aa22.79■■□□□ 1.24
SNCA-209ENST00000506244 LTV1Q96GA3 475 aaPredicted RBP22.79■■□□□ 1.24
SNCA-209ENST00000506244 EP400Q96L91 3159 aa22.79■■□□□ 1.24
SNCA-209ENST00000506244 AMER1Q5JTC6 1135 aaPredicted RBP22.78■■□□□ 1.24
SNCA-209ENST00000506244 EMILIN1Q9Y6C2 1016 aa22.78■■□□□ 1.24
SNCA-209ENST00000506244 MAP2P11137 1827 aaKnown RBP22.78■■□□□ 1.24
SNCA-209ENST00000506244 TNS2Q63HR2 1409 aa22.77■■□□□ 1.24
SNCA-209ENST00000506244 DDB1Q16531 1140 aa22.77■■□□□ 1.24
SNCA-209ENST00000506244 NPC1L1Q9UHC9 1359 aa22.76■■□□□ 1.23
SNCA-209ENST00000506244 OVOS2A0A0G2JMS6 1433 aa22.75■■□□□ 1.23
SNCA-209ENST00000506244 RGPD1P0DJD0 1748 aa22.75■■□□□ 1.23
SNCA-209ENST00000506244 PPM1GO15355 546 aaPredicted RBP22.75■■□□□ 1.23
SNCA-209ENST00000506244 IL2RBP14784 551 aa22.75■■□□□ 1.23
SNCA-209ENST00000506244 TNNT2P45379 298 aaPredicted RBP22.75■■□□□ 1.23
SNCA-209ENST00000506244 SF3B2Q13435 895 aaKnown RBP22.75■■□□□ 1.23
SNCA-209ENST00000506244 FAM196AQ6ZSG2 479 aa22.75■■□□□ 1.23
SNCA-209ENST00000506244 PER1O15534 1290 aaPredicted RBP22.74■■□□□ 1.23
SNCA-209ENST00000506244 HSP90AB2PQ58FF8 381 aa22.74■■□□□ 1.23
SNCA-209ENST00000506244 POLKQ9UBT6 870 aa22.74■■□□□ 1.23
SNCA-209ENST00000506244 EXOC5O00471 708 aa22.71■■□□□ 1.23
SNCA-209ENST00000506244 RGPD2P0DJD1 1756 aa22.71■■□□□ 1.23
SNCA-209ENST00000506244 FAM182BQ5T319 152 aa22.69■■□□□ 1.22
SNCA-209ENST00000506244 CC2D1BQ5T0F9 858 aaKnown RBP22.68■■□□□ 1.22
SNCA-209ENST00000506244 BCL9O00512 1426 aa22.67■■□□□ 1.22
SNCA-209ENST00000506244 TNS1Q9HBL0 1735 aaKnown RBP22.67■■□□□ 1.22
SNCA-209ENST00000506244 NBPF6Q5VWK0 638 aa22.66■■□□□ 1.22
SNCA-209ENST00000506244 RAPGEF4Q8WZA2 1011 aa22.66■■□□□ 1.22
SNCA-209ENST00000506244 NBPF4Q96M43 638 aa22.66■■□□□ 1.22
SNCA-209ENST00000506244 NCAPD2Q15021 1401 aa22.65■■□□□ 1.22
SNCA-209ENST00000506244 MEGF6O75095 1541 aa22.65■■□□□ 1.22
SNCA-209ENST00000506244 BAG6P46379 1132 aa22.64■■□□□ 1.21
SNCA-209ENST00000506244 USHBP1Q8N6Y0 703 aa22.63■■□□□ 1.21
SNCA-209ENST00000506244 MARCH10Q8NA82 808 aaPredicted RBP22.63■■□□□ 1.21
SNCA-209ENST00000506244 TATP17735 454 aaPredicted RBP22.62■■□□□ 1.21
SNCA-209ENST00000506244 EIF4A2Q14240 407 aaKnown RBP22.62■■□□□ 1.21
SNCA-209ENST00000506244 TRIM37O94972 964 aa22.61■■□□□ 1.21
SNCA-209ENST00000506244 PLEKHG2Q9H7P9 1386 aa22.61■■□□□ 1.21
SNCA-209ENST00000506244 SBF2Q86WG5 1849 aa22.59■■□□□ 1.21
SNCA-209ENST00000506244 SHANK3Q9BYB0 1731 aa22.58■■□□□ 1.21
SNCA-209ENST00000506244 ZCRB1Q8TBF4 217 aaKnown RBP22.58■■□□□ 1.21
SNCA-209ENST00000506244 EYA1Q99502 592 aa22.58■■□□□ 1.21
SNCA-209ENST00000506244 PARD3Q8TEW0 1356 aa22.58■■□□□ 1.21
SNCA-209ENST00000506244 IGSF1Q8N6C5 1336 aa22.57■■□□□ 1.2
SNCA-209ENST00000506244 PKD1L3Q7Z443 1732 aa22.57■■□□□ 1.2
SNCA-209ENST00000506244 NHSQ6T4R5 1651 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms