RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 NUP188Q5SRE5 1749 aa29.95■■■□□ 2.38
SQSTM1-210ENST00000506042 TTC21BQ7Z4L5 1316 aa29.94■■■□□ 2.38
SQSTM1-210ENST00000506042 RGPD3A6NKT7 1758 aaPredicted RBP29.93■■■□□ 2.38
SQSTM1-210ENST00000506042 RGPD4Q7Z3J3 1758 aa29.93■■■□□ 2.38
SQSTM1-210ENST00000506042 AKAP12Q02952 1782 aa29.92■■■□□ 2.38
SQSTM1-210ENST00000506042 KTN1Q86UP2 1357 aaKnown RBP29.92■■■□□ 2.38
SQSTM1-210ENST00000506042 SPON1Q9HCB6 807 aa29.91■■■□□ 2.38
SQSTM1-210ENST00000506042 LRRC37A3O60309 1634 aa29.91■■■□□ 2.38
SQSTM1-210ENST00000506042 PLSCR1O15162 318 aa29.9■■■□□ 2.38
SQSTM1-210ENST00000506042 ABCC6O95255 1503 aa29.9■■■□□ 2.38
SQSTM1-210ENST00000506042 BCL11BQ9C0K0 894 aaPredicted RBP29.89■■■□□ 2.38
SQSTM1-210ENST00000506042 ARHGEF25Q86VW2 580 aa29.88■■■□□ 2.37
SQSTM1-210ENST00000506042 CARD10Q9BWT7 1032 aa29.88■■■□□ 2.37
SQSTM1-210ENST00000506042 CCDC7Q96M83 1385 aa29.88■■■□□ 2.37
SQSTM1-210ENST00000506042 WNK3Q9BYP7 1800 aa29.87■■■□□ 2.37
SQSTM1-210ENST00000506042 SIN3AQ96ST3 1273 aa29.87■■■□□ 2.37
SQSTM1-210ENST00000506042 SBNO2Q9Y2G9 1366 aa29.87■■■□□ 2.37
SQSTM1-210ENST00000506042 SOX12O15370 315 aa29.86■■■□□ 2.37
SQSTM1-210ENST00000506042 COL18A1P39060 1754 aa29.85■■■□□ 2.37
SQSTM1-210ENST00000506042 EXOC5O00471 708 aa29.85■■■□□ 2.37
SQSTM1-210ENST00000506042 HDGFL2Q7Z4V5 671 aaPredicted RBP29.85■■■□□ 2.37
SQSTM1-210ENST00000506042 PEAK1Q9H792 1746 aa29.85■■■□□ 2.37
SQSTM1-210ENST00000506042 BCL9O00512 1426 aa29.83■■■□□ 2.37
SQSTM1-210ENST00000506042 KCNQ2O43526 872 aa29.83■■■□□ 2.37
SQSTM1-210ENST00000506042 SBF2Q86WG5 1849 aa29.82■■■□□ 2.36
SQSTM1-210ENST00000506042 CARD11Q9BXL7 1154 aa29.82■■■□□ 2.36
SQSTM1-210ENST00000506042 MON2Q7Z3U7 1717 aa29.8■■■□□ 2.36
SQSTM1-210ENST00000506042 SLC24A1O60721 1099 aa29.8■■■□□ 2.36
SQSTM1-210ENST00000506042 AXIN2Q9Y2T1 843 aa29.8■■■□□ 2.36
SQSTM1-210ENST00000506042 TERF2IPQ9NYB0 399 aa29.79■■■□□ 2.36
SQSTM1-210ENST00000506042 TMC1Q8TDI8 760 aa29.78■■■□□ 2.36
SQSTM1-210ENST00000506042 TONSLQ96HA7 1378 aa29.77■■■□□ 2.36
SQSTM1-210ENST00000506042 NINLQ9Y2I6 1382 aa29.77■■■□□ 2.36
SQSTM1-210ENST00000506042 RGPD5Q99666 1765 aa29.77■■■□□ 2.36
SQSTM1-210ENST00000506042 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.76■■■□□ 2.35
SQSTM1-210ENST00000506042 NFAT5O94916 1531 aa29.76■■■□□ 2.35
SQSTM1-210ENST00000506042 USP31Q70CQ4 1352 aa29.75■■■□□ 2.35
SQSTM1-210ENST00000506042 MARCH10Q8NA82 808 aaPredicted RBP29.74■■■□□ 2.35
SQSTM1-210ENST00000506042 STK32BQ9NY57 414 aa29.74■■■□□ 2.35
SQSTM1-210ENST00000506042 TNS2Q63HR2 1409 aa29.73■■■□□ 2.35
SQSTM1-210ENST00000506042 NLRP2Q9NX02 1062 aa29.72■■■□□ 2.35
SQSTM1-210ENST00000506042 PUS7Q96PZ0 661 aaKnown RBP29.71■■■□□ 2.35
SQSTM1-210ENST00000506042 USP54Q70EL1 1684 aa29.71■■■□□ 2.35
SQSTM1-210ENST00000506042 EDC4Q6P2E9 1401 aaKnown RBP29.71■■■□□ 2.35
SQSTM1-210ENST00000506042 ERBB3P21860 1342 aa29.69■■■□□ 2.34
SQSTM1-210ENST00000506042 IL2RBP14784 551 aa29.68■■■□□ 2.34
SQSTM1-210ENST00000506042 LTN1O94822 1766 aa29.67■■■□□ 2.34
SQSTM1-210ENST00000506042 YY1P25490 414 aa29.67■■■□□ 2.34
SQSTM1-210ENST00000506042 TXNRD1Q16881 649 aa29.66■■■□□ 2.34
SQSTM1-210ENST00000506042 NME9Q86XW9 330 aa29.64■■■□□ 2.34
SQSTM1-210ENST00000506042 NHSQ6T4R5 1651 aa29.63■■■□□ 2.33
SQSTM1-210ENST00000506042 ANKRD24Q8TF21 1146 aa29.62■■■□□ 2.33
SQSTM1-210ENST00000506042 ANO8Q9HCE9 1232 aaPredicted RBP29.61■■■□□ 2.33
SQSTM1-210ENST00000506042 FAM208AQ9UK61 1670 aaKnown RBP29.6■■■□□ 2.33
SQSTM1-210ENST00000506042 CASZ1Q86V15 1759 aa29.6■■■□□ 2.33
SQSTM1-210ENST00000506042 SLC15A2Q16348 729 aa29.6■■■□□ 2.33
SQSTM1-210ENST00000506042 SLC12A5Q9H2X9 1139 aa29.59■■■□□ 2.33
SQSTM1-210ENST00000506042 CD163L1Q9NR16 1453 aa29.57■■■□□ 2.32
SQSTM1-210ENST00000506042 A0A1W2PP64 1363 aa29.57■■■□□ 2.32
SQSTM1-210ENST00000506042 COG3Q96JB2 828 aa29.57■■■□□ 2.32
SQSTM1-210ENST00000506042 ZBTB7AO95365 584 aa29.56■■■□□ 2.32
SQSTM1-210ENST00000506042 MTFR1LQ9H019 292 aa29.56■■■□□ 2.32
SQSTM1-210ENST00000506042 PTF1AQ7RTS3 328 aa29.55■■■□□ 2.32
SQSTM1-210ENST00000506042 PROM2Q8N271 834 aa29.55■■■□□ 2.32
SQSTM1-210ENST00000506042 ACSBG1Q96GR2 724 aa29.54■■■□□ 2.32
SQSTM1-210ENST00000506042 IP6K1Q92551 441 aa29.53■■■□□ 2.32
SQSTM1-210ENST00000506042 HMGB2P26583 209 aaKnown RBP29.51■■■□□ 2.31
SQSTM1-210ENST00000506042 AMPHP49418 695 aa29.51■■■□□ 2.31
SQSTM1-210ENST00000506042 ATF5Q9Y2D1 282 aaPredicted RBP29.5■■■□□ 2.31
SQSTM1-210ENST00000506042 KAT6BQ8WYB5 2073 aa29.49■■■□□ 2.31
SQSTM1-210ENST00000506042 BTAF1O14981 1849 aa29.48■■■□□ 2.31
SQSTM1-210ENST00000506042 SLC27A3Q5K4L6 730 aa29.47■■■□□ 2.31
SQSTM1-210ENST00000506042 SMG6Q86US8 1419 aaKnown RBP29.46■■■□□ 2.31
SQSTM1-210ENST00000506042 CDCA8Q53HL2 280 aa29.46■■■□□ 2.31
SQSTM1-210ENST00000506042 DDX54Q8TDD1 881 aaKnown RBP29.46■■■□□ 2.31
SQSTM1-210ENST00000506042 LTV1Q96GA3 475 aaPredicted RBP29.46■■■□□ 2.31
SQSTM1-210ENST00000506042 MYOM1P52179 1685 aa29.46■■■□□ 2.31
SQSTM1-210ENST00000506042 ST20-MTHFSA0A0A6YYL1 179 aa29.44■■■□□ 2.3
SQSTM1-210ENST00000506042 TMF1P82094 1093 aa29.44■■■□□ 2.3
SQSTM1-210ENST00000506042 RTL1A6NKG5 1358 aa29.43■■■□□ 2.3
SQSTM1-210ENST00000506042 PTGER2P43116 358 aa29.43■■■□□ 2.3
SQSTM1-210ENST00000506042 SLC16A10Q8TF71 515 aa29.43■■■□□ 2.3
SQSTM1-210ENST00000506042 ANKRD36BQ8N2N9 1353 aa29.42■■■□□ 2.3
SQSTM1-210ENST00000506042 SYTL4Q96C24 671 aaPredicted RBP29.41■■■□□ 2.3
SQSTM1-210ENST00000506042 PDGFDQ9GZP0 370 aaPredicted RBP29.41■■■□□ 2.3
SQSTM1-210ENST00000506042 POLD1P28340 1107 aa29.4■■■□□ 2.3
SQSTM1-210ENST00000506042 ARXQ96QS3 562 aa29.4■■■□□ 2.3
SQSTM1-210ENST00000506042 FHDC1Q9C0D6 1143 aaPredicted RBP29.4■■■□□ 2.3
SQSTM1-210ENST00000506042 CGNL1Q0VF96 1302 aa29.4■■■□□ 2.3
SQSTM1-210ENST00000506042 HOXC9P31274 260 aa29.39■■■□□ 2.3
SQSTM1-210ENST00000506042 SYT17Q9BSW7 474 aa29.39■■■□□ 2.3
SQSTM1-210ENST00000506042 MAP3K19Q56UN5 1328 aa29.39■■■□□ 2.3
SQSTM1-210ENST00000506042 TESK2Q96S53 571 aa29.38■■■□□ 2.29
SQSTM1-210ENST00000506042 PAPPAQ13219 1627 aa29.38■■■□□ 2.29
SQSTM1-210ENST00000506042 ZCRB1Q8TBF4 217 aaKnown RBP29.37■■■□□ 2.29
SQSTM1-210ENST00000506042 RAPGEF4Q8WZA2 1011 aa29.36■■■□□ 2.29
SQSTM1-210ENST00000506042 TFCP2L1Q9NZI6 479 aa29.34■■■□□ 2.29
SQSTM1-210ENST00000506042 MAP3K5Q99683 1374 aa29.34■■■□□ 2.29
SQSTM1-210ENST00000506042 QSER1Q2KHR3 1735 aa29.34■■■□□ 2.29
SQSTM1-210ENST00000506042 USP47Q96K76 1375 aa29.3■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms