RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 RGS17Q9UGC6 210 aaPredicted RBP16.97■□□□□ 0.31
SNCA-208ENST00000505199 CDK12Q9NYV4 1490 aaPredicted RBP16.97■□□□□ 0.31
SNCA-208ENST00000505199 FAM208AQ9UK61 1670 aaKnown RBP16.97■□□□□ 0.31
SNCA-208ENST00000505199 MAP3K19Q56UN5 1328 aa16.96■□□□□ 0.31
SNCA-208ENST00000505199 MAP2P11137 1827 aaKnown RBP16.95■□□□□ 0.3
SNCA-208ENST00000505199 INSRP06213 1382 aa16.94■□□□□ 0.3
SNCA-208ENST00000505199 QTRT2Q9H974 415 aaKnown RBP16.94■□□□□ 0.3
SNCA-208ENST00000505199 CRB1P82279 1406 aa16.94■□□□□ 0.3
SNCA-208ENST00000505199 ERBB3P21860 1342 aa16.94■□□□□ 0.3
SNCA-208ENST00000505199 WDR17Q8IZU2 1322 aa16.94■□□□□ 0.3
SNCA-208ENST00000505199 PLEKHG5O94827 1062 aa16.93■□□□□ 0.3
SNCA-208ENST00000505199 AMPHP49418 695 aa16.93■□□□□ 0.3
SNCA-208ENST00000505199 RBM6P78332 1123 aaKnown RBP16.93■□□□□ 0.3
SNCA-208ENST00000505199 DDX10Q13206 875 aaKnown RBP16.93■□□□□ 0.3
SNCA-208ENST00000505199 CHRNA2Q15822 529 aa16.93■□□□□ 0.3
SNCA-208ENST00000505199 THRAP3Q9Y2W1 955 aaKnown RBP16.93■□□□□ 0.3
SNCA-208ENST00000505199 SOX12O15370 315 aa16.92■□□□□ 0.3
SNCA-208ENST00000505199 HOXC9P31274 260 aa16.92■□□□□ 0.3
SNCA-208ENST00000505199 EVA1CP58658 441 aa16.92■□□□□ 0.3
SNCA-208ENST00000505199 GJD4Q96KN9 370 aaPredicted RBP16.92■□□□□ 0.3
SNCA-208ENST00000505199 POLKQ9UBT6 870 aa16.92■□□□□ 0.3
SNCA-208ENST00000505199 PARD3Q8TEW0 1356 aa16.91■□□□□ 0.3
SNCA-208ENST00000505199 PLEKHG2Q9H7P9 1386 aa16.91■□□□□ 0.3
SNCA-208ENST00000505199 ONECUT3O60422 494 aaPredicted RBP16.91■□□□□ 0.3
SNCA-208ENST00000505199 RALBP1Q15311 655 aa16.91■□□□□ 0.3
SNCA-208ENST00000505199 AXIN2Q9Y2T1 843 aa16.91■□□□□ 0.3
SNCA-208ENST00000505199 SPATA31A5Q5VU36 1347 aa16.91■□□□□ 0.3
SNCA-208ENST00000505199 SPATA31A7Q8IWB4 1347 aa16.91■□□□□ 0.3
SNCA-208ENST00000505199 RXRBP28702 533 aa16.9■□□□□ 0.3
SNCA-208ENST00000505199 RRS1Q15050 365 aaKnown RBP16.9■□□□□ 0.3
SNCA-208ENST00000505199 CC2D1BQ5T0F9 858 aaKnown RBP16.9■□□□□ 0.3
SNCA-208ENST00000505199 RGPD5Q99666 1765 aa16.89■□□□□ 0.3
SNCA-208ENST00000505199 BARGINQ6ZT62 677 aa16.89■□□□□ 0.29
SNCA-208ENST00000505199 CDCA7Q9BWT1 371 aaPredicted RBP16.89■□□□□ 0.29
SNCA-208ENST00000505199 CARD10Q9BWT7 1032 aa16.89■□□□□ 0.29
SNCA-208ENST00000505199 PEAK1Q9H792 1746 aa16.89■□□□□ 0.29
SNCA-208ENST00000505199 SPATA31A1Q5TZJ5 1347 aa16.89■□□□□ 0.29
SNCA-208ENST00000505199 GLI3P10071 1580 aa16.88■□□□□ 0.29
SNCA-208ENST00000505199 POTEAQ6S8J7 498 aa16.87■□□□□ 0.29
SNCA-208ENST00000505199 EMILIN1Q9Y6C2 1016 aa16.87■□□□□ 0.29
SNCA-208ENST00000505199 TCP11L2Q8N4U5 519 aa16.86■□□□□ 0.29
SNCA-208ENST00000505199 ANKRD24Q8TF21 1146 aa16.86■□□□□ 0.29
SNCA-208ENST00000505199 STRN4Q9NRL3 753 aa16.86■□□□□ 0.29
SNCA-208ENST00000505199 ZBTB7CA1YPR0 619 aa16.85■□□□□ 0.29
SNCA-208ENST00000505199 HSP90AB2PQ58FF8 381 aa16.85■□□□□ 0.29
SNCA-208ENST00000505199 LARP1Q6PKG0 1096 aaKnown RBP16.85■□□□□ 0.29
SNCA-208ENST00000505199 TOM1L2Q6ZVM7 507 aa16.85■□□□□ 0.29
SNCA-208ENST00000505199 NCAPD2Q15021 1401 aa16.85■□□□□ 0.29
SNCA-208ENST00000505199 CSB-PGBD3P0DP91 1061 aa16.84■□□□□ 0.29
SNCA-208ENST00000505199 FBLN1P23142 703 aa16.84■□□□□ 0.29
SNCA-208ENST00000505199 TNNT2P45379 298 aaPredicted RBP16.84■□□□□ 0.29
SNCA-208ENST00000505199 THSD7AQ9UPZ6 1657 aa16.84■□□□□ 0.29
SNCA-208ENST00000505199 MTHFSP49914 203 aa16.83■□□□□ 0.28
SNCA-208ENST00000505199 PARP4Q9UKK3 1724 aaKnown RBP16.82■□□□□ 0.28
SNCA-208ENST00000505199 PPM1GO15355 546 aaPredicted RBP16.82■□□□□ 0.28
SNCA-208ENST00000505199 CCDC9Q9Y3X0 531 aaKnown RBP16.82■□□□□ 0.28
SNCA-208ENST00000505199 WNK3Q9BYP7 1800 aa16.82■□□□□ 0.28
SNCA-208ENST00000505199 PPP2R1AP30153 589 aa16.81■□□□□ 0.28
SNCA-208ENST00000505199 CFAP53Q96M91 514 aa16.81■□□□□ 0.28
SNCA-208ENST00000505199 PRKRIP1Q9H875 184 aaPredicted RBP16.81■□□□□ 0.28
SNCA-208ENST00000505199 DISP2A7MBM2 1401 aa16.8■□□□□ 0.28
SNCA-208ENST00000505199 MYBBP1AQ9BQG0 1328 aaKnown RBP16.8■□□□□ 0.28
SNCA-208ENST00000505199 NLRP2Q9NX02 1062 aa16.8■□□□□ 0.28
SNCA-208ENST00000505199 IGSF1Q8N6C5 1336 aa16.79■□□□□ 0.28
SNCA-208ENST00000505199 COL3A1P02461 1466 aaPredicted RBP16.79■□□□□ 0.28
SNCA-208ENST00000505199 RGPD1P0DJD0 1748 aa16.79■□□□□ 0.28
SNCA-208ENST00000505199 RGS12O14924 1447 aa16.79■□□□□ 0.28
SNCA-208ENST00000505199 KDRP35968 1356 aa16.78■□□□□ 0.28
SNCA-208ENST00000505199 EIF4A2Q14240 407 aaKnown RBP16.78■□□□□ 0.28
SNCA-208ENST00000505199 DIAPH1O60610 1272 aaKnown RBP16.77■□□□□ 0.28
SNCA-208ENST00000505199 IL2RBP14784 551 aa16.77■□□□□ 0.28
SNCA-208ENST00000505199 IL13P35225 146 aa16.76■□□□□ 0.27
SNCA-208ENST00000505199 FAM98CQ17RN3 349 aaKnown RBP16.76■□□□□ 0.27
SNCA-208ENST00000505199 NBPF6Q5VWK0 638 aa16.76■□□□□ 0.27
SNCA-208ENST00000505199 SEPT12Q8IYM1 358 aa16.76■□□□□ 0.27
SNCA-208ENST00000505199 NBPF4Q96M43 638 aa16.76■□□□□ 0.27
SNCA-208ENST00000505199 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.76■□□□□ 0.27
SNCA-208ENST00000505199 LTV1Q96GA3 475 aaPredicted RBP16.75■□□□□ 0.27
SNCA-208ENST00000505199 USP35Q9P2H5 1018 aa16.75■□□□□ 0.27
SNCA-208ENST00000505199 NUDCQ9Y266 331 aa16.75■□□□□ 0.27
SNCA-208ENST00000505199 BCL9O00512 1426 aa16.75■□□□□ 0.27
SNCA-208ENST00000505199 RGPD2P0DJD1 1756 aa16.74■□□□□ 0.27
SNCA-208ENST00000505199 OVOS2A0A0G2JMS6 1433 aa16.74■□□□□ 0.27
SNCA-208ENST00000505199 TNS2Q63HR2 1409 aa16.74■□□□□ 0.27
SNCA-208ENST00000505199 ANP32CO43423 234 aa16.74■□□□□ 0.27
SNCA-208ENST00000505199 RAPGEF4Q8WZA2 1011 aa16.74■□□□□ 0.27
SNCA-208ENST00000505199 EYA1Q99502 592 aa16.74■□□□□ 0.27
SNCA-208ENST00000505199 LRRC37A3O60309 1634 aa16.74■□□□□ 0.27
SNCA-208ENST00000505199 DDB1Q16531 1140 aa16.73■□□□□ 0.27
SNCA-208ENST00000505199 EXOC5O00471 708 aa16.71■□□□□ 0.27
SNCA-208ENST00000505199 KRT27Q7Z3Y8 459 aa16.71■□□□□ 0.27
SNCA-208ENST00000505199 PKD1L3Q7Z443 1732 aa16.7■□□□□ 0.26
SNCA-208ENST00000505199 BRWD3Q6RI45 1802 aa16.7■□□□□ 0.26
SNCA-208ENST00000505199 TATP17735 454 aaPredicted RBP16.7■□□□□ 0.26
SNCA-208ENST00000505199 PDE3BQ13370 1112 aa16.7■□□□□ 0.26
SNCA-208ENST00000505199 MEGF6O75095 1541 aa16.7■□□□□ 0.26
SNCA-208ENST00000505199 AMOTQ4VCS5 1084 aa16.69■□□□□ 0.26
SNCA-208ENST00000505199 A0A0G2JS52 829 aa16.68■□□□□ 0.26
SNCA-208ENST00000505199 FCHSD2O94868 740 aa16.68■□□□□ 0.26
SNCA-208ENST00000505199 MYT1Q01538 1121 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms