RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 USP21Q9UK80 565 aa16.11■□□□□ 0.17
CUX1-210ENST00000497815 PEAK1Q9H792 1746 aa16.11■□□□□ 0.17
CUX1-210ENST00000497815 PPP2R1AP30153 589 aa16.1■□□□□ 0.17
CUX1-210ENST00000497815 EVA1CP58658 441 aa16.1■□□□□ 0.17
CUX1-210ENST00000497815 RALBP1Q15311 655 aa16.1■□□□□ 0.17
CUX1-210ENST00000497815 IP6K1Q92551 441 aa16.1■□□□□ 0.17
CUX1-210ENST00000497815 LTV1Q96GA3 475 aaPredicted RBP16.1■□□□□ 0.17
CUX1-210ENST00000497815 CAMTA1Q9Y6Y1 1673 aa16.1■□□□□ 0.17
CUX1-210ENST00000497815 SLIT2O94813 1529 aa16.09■□□□□ 0.17
CUX1-210ENST00000497815 LMO7Q8WWI1 1683 aa16.09■□□□□ 0.17
CUX1-210ENST00000497815 COL18A1P39060 1754 aa16.09■□□□□ 0.17
CUX1-210ENST00000497815 ANP32CO43423 234 aa16.09■□□□□ 0.17
CUX1-210ENST00000497815 MTHFSP49914 203 aa16.09■□□□□ 0.17
CUX1-210ENST00000497815 HSP90AB2PQ58FF8 381 aa16.09■□□□□ 0.17
CUX1-210ENST00000497815 FNBP4Q8N3X1 1017 aaPredicted RBP16.09■□□□□ 0.17
CUX1-210ENST00000497815 PRKRIP1Q9H875 184 aaPredicted RBP16.09■□□□□ 0.17
CUX1-210ENST00000497815 RTL1A6NKG5 1358 aa16.09■□□□□ 0.17
CUX1-210ENST00000497815 FLT4P35916 1363 aa16.09■□□□□ 0.17
CUX1-210ENST00000497815 CSB-PGBD3P0DP91 1061 aa16.08■□□□□ 0.16
CUX1-210ENST00000497815 BCL9LQ86UU0 1499 aa16.08■□□□□ 0.16
CUX1-210ENST00000497815 MAP2P11137 1827 aaKnown RBP16.08■□□□□ 0.16
CUX1-210ENST00000497815 DIEXFQ68CQ4 756 aaKnown RBP16.07■□□□□ 0.16
CUX1-210ENST00000497815 UNC5CLQ8IV45 518 aa16.07■□□□□ 0.16
CUX1-210ENST00000497815 ANKRD24Q8TF21 1146 aa16.07■□□□□ 0.16
CUX1-210ENST00000497815 CCDC9Q9Y3X0 531 aaKnown RBP16.07■□□□□ 0.16
CUX1-210ENST00000497815 SMG6Q86US8 1419 aaKnown RBP16.07■□□□□ 0.16
CUX1-210ENST00000497815 COL5A2P05997 1499 aaPredicted RBP16.07■□□□□ 0.16
CUX1-210ENST00000497815 ABCC6O95255 1503 aa16.06■□□□□ 0.16
CUX1-210ENST00000497815 BLMP54132 1417 aaPredicted RBP16.06■□□□□ 0.16
CUX1-210ENST00000497815 KIF24Q5T7B8 1368 aa16.06■□□□□ 0.16
CUX1-210ENST00000497815 RGPD5Q99666 1765 aa16.05■□□□□ 0.16
CUX1-210ENST00000497815 NRAPQ86VF7 1730 aa16.05■□□□□ 0.16
CUX1-210ENST00000497815 NWD2Q9ULI1 1742 aa16.05■□□□□ 0.16
CUX1-210ENST00000497815 CDK12Q9NYV4 1490 aaPredicted RBP16.05■□□□□ 0.16
CUX1-210ENST00000497815 INSRP06213 1382 aa16.05■□□□□ 0.16
CUX1-210ENST00000497815 MYBBP1AQ9BQG0 1328 aaKnown RBP16.05■□□□□ 0.16
CUX1-210ENST00000497815 ZNF772Q68DY9 489 aaPredicted RBP16.05■□□□□ 0.16
CUX1-210ENST00000497815 LARP1Q6PKG0 1096 aaKnown RBP16.05■□□□□ 0.16
CUX1-210ENST00000497815 ERBB3P21860 1342 aa16.03■□□□□ 0.16
CUX1-210ENST00000497815 TOM1L2Q6ZVM7 507 aa16.03■□□□□ 0.16
CUX1-210ENST00000497815 CFAP53Q96M91 514 aa16.03■□□□□ 0.16
CUX1-210ENST00000497815 QTRT2Q9H974 415 aaKnown RBP16.03■□□□□ 0.16
CUX1-210ENST00000497815 NLRP2Q9NX02 1062 aa16.03■□□□□ 0.16
CUX1-210ENST00000497815 USP35Q9P2H5 1018 aa16.03■□□□□ 0.16
CUX1-210ENST00000497815 RGS17Q9UGC6 210 aaPredicted RBP16.03■□□□□ 0.16
CUX1-210ENST00000497815 WDR17Q8IZU2 1322 aa16.02■□□□□ 0.16
CUX1-210ENST00000497815 EIF4A2Q14240 407 aaKnown RBP16.02■□□□□ 0.16
CUX1-210ENST00000497815 VPS72Q15906 364 aa16.02■□□□□ 0.16
CUX1-210ENST00000497815 TRPC5Q9UL62 973 aaPredicted RBP16.02■□□□□ 0.16
CUX1-210ENST00000497815 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.01■□□□□ 0.15
CUX1-210ENST00000497815 ATRNO75882 1429 aa16.01■□□□□ 0.15
CUX1-210ENST00000497815 DIAPH1O60610 1272 aaKnown RBP16■□□□□ 0.15
CUX1-210ENST00000497815 USHBP1Q8N6Y0 703 aa16■□□□□ 0.15
CUX1-210ENST00000497815 CRB1P82279 1406 aa16■□□□□ 0.15
CUX1-210ENST00000497815 POTEAQ6S8J7 498 aa15.99■□□□□ 0.15
CUX1-210ENST00000497815 SPATA31A5Q5VU36 1347 aa15.98■□□□□ 0.15
CUX1-210ENST00000497815 SPATA31A7Q8IWB4 1347 aa15.98■□□□□ 0.15
CUX1-210ENST00000497815 COL3A1P02461 1466 aaPredicted RBP15.98■□□□□ 0.15
CUX1-210ENST00000497815 IL13P35225 146 aa15.98■□□□□ 0.15
CUX1-210ENST00000497815 NBPF6Q5VWK0 638 aa15.98■□□□□ 0.15
CUX1-210ENST00000497815 GJD4Q96KN9 370 aaPredicted RBP15.98■□□□□ 0.15
CUX1-210ENST00000497815 NBPF4Q96M43 638 aa15.98■□□□□ 0.15
CUX1-210ENST00000497815 SPATA31A1Q5TZJ5 1347 aa15.97■□□□□ 0.15
CUX1-210ENST00000497815 U2SURPO15042 1029 aaKnown RBP15.97■□□□□ 0.15
CUX1-210ENST00000497815 EYA1Q99502 592 aa15.97■□□□□ 0.15
CUX1-210ENST00000497815 CARD10Q9BWT7 1032 aa15.97■□□□□ 0.15
CUX1-210ENST00000497815 FAM98CQ17RN3 349 aaKnown RBP15.96■□□□□ 0.15
CUX1-210ENST00000497815 GLI3P10071 1580 aa15.96■□□□□ 0.14
CUX1-210ENST00000497815 FAM208AQ9UK61 1670 aaKnown RBP15.95■□□□□ 0.14
CUX1-210ENST00000497815 RGPD2P0DJD1 1756 aa15.95■□□□□ 0.14
CUX1-210ENST00000497815 A0A0G2JS52 829 aa15.95■□□□□ 0.14
CUX1-210ENST00000497815 RXRBP28702 533 aa15.95■□□□□ 0.14
CUX1-210ENST00000497815 MYT1Q01538 1121 aa15.95■□□□□ 0.14
CUX1-210ENST00000497815 CCDC184Q52MB2 194 aa15.95■□□□□ 0.14
CUX1-210ENST00000497815 TCP11L2Q8N4U5 519 aa15.95■□□□□ 0.14
CUX1-210ENST00000497815 RBM6P78332 1123 aaKnown RBP15.94■□□□□ 0.14
CUX1-210ENST00000497815 HMOX1P09601 288 aa15.93■□□□□ 0.14
CUX1-210ENST00000497815 AEBP1Q8IUX7 1158 aa15.93■□□□□ 0.14
CUX1-210ENST00000497815 MIER1Q8N108 512 aa15.93■□□□□ 0.14
CUX1-210ENST00000497815 MRS2Q9HD23 443 aa15.93■□□□□ 0.14
CUX1-210ENST00000497815 NUDCQ9Y266 331 aa15.93■□□□□ 0.14
CUX1-210ENST00000497815 IGSF1Q8N6C5 1336 aa15.93■□□□□ 0.14
CUX1-210ENST00000497815 U2AF1L5P0DN76 240 aaPredicted RBP15.92■□□□□ 0.14
CUX1-210ENST00000497815 U2AF1Q01081 240 aaKnown RBP eCLIP15.92■□□□□ 0.14
CUX1-210ENST00000497815 SULT6B1Q6IMI4 303 aa15.92■□□□□ 0.14
CUX1-210ENST00000497815 THRAP3Q9Y2W1 955 aaKnown RBP15.92■□□□□ 0.14
CUX1-210ENST00000497815 BARGINQ6ZT62 677 aa15.91■□□□□ 0.14
CUX1-210ENST00000497815 RGPD1P0DJD0 1748 aa15.91■□□□□ 0.14
CUX1-210ENST00000497815 IL2RBP14784 551 aa15.9■□□□□ 0.14
CUX1-210ENST00000497815 RAPGEF4Q8WZA2 1011 aa15.9■□□□□ 0.14
CUX1-210ENST00000497815 WDR43Q15061 677 aaKnown RBP eCLIP15.89■□□□□ 0.13
CUX1-210ENST00000497815 SEPT12Q8IYM1 358 aa15.89■□□□□ 0.13
CUX1-210ENST00000497815 MEGF6O75095 1541 aa15.89■□□□□ 0.13
CUX1-210ENST00000497815 NCAPD2Q15021 1401 aa15.88■□□□□ 0.13
CUX1-210ENST00000497815 TATP17735 454 aaPredicted RBP15.88■□□□□ 0.13
CUX1-210ENST00000497815 DISP2A7MBM2 1401 aa15.87■□□□□ 0.13
CUX1-210ENST00000497815 CDCA7Q9BWT1 371 aaPredicted RBP15.87■□□□□ 0.13
CUX1-210ENST00000497815 WNK3Q9BYP7 1800 aa15.87■□□□□ 0.13
CUX1-210ENST00000497815 RGS12O14924 1447 aa15.86■□□□□ 0.13
CUX1-210ENST00000497815 ONECUT3O60422 494 aaPredicted RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms