RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 IP6K1Q92551 441 aa29.36■■■□□ 2.29
C9orf3-222ENST00000496567 HOXC9P31274 260 aa29.35■■■□□ 2.29
C9orf3-222ENST00000496567 C8orf37Q96NL8 207 aa29.34■■■□□ 2.29
C9orf3-222ENST00000496567 COL18A1P39060 1754 aa29.32■■■□□ 2.28
C9orf3-222ENST00000496567 NGLY1Q96IV0 654 aa29.32■■■□□ 2.28
C9orf3-222ENST00000496567 BLMP54132 1417 aaPredicted RBP29.32■■■□□ 2.28
C9orf3-222ENST00000496567 CDK12Q9NYV4 1490 aaPredicted RBP29.32■■■□□ 2.28
C9orf3-222ENST00000496567 PEAK1Q9H792 1746 aa29.32■■■□□ 2.28
C9orf3-222ENST00000496567 LMO7Q8WWI1 1683 aa29.31■■■□□ 2.28
C9orf3-222ENST00000496567 INSRP06213 1382 aa29.3■■■□□ 2.28
C9orf3-222ENST00000496567 CFAP53Q96M91 514 aa29.3■■■□□ 2.28
C9orf3-222ENST00000496567 AXIN2Q9Y2T1 843 aa29.3■■■□□ 2.28
C9orf3-222ENST00000496567 BTG4Q9NY30 223 aa29.29■■■□□ 2.28
C9orf3-222ENST00000496567 HSP90AB2PQ58FF8 381 aa29.28■■■□□ 2.28
C9orf3-222ENST00000496567 PLCH1Q4KWH8 1693 aa29.28■■■□□ 2.28
C9orf3-222ENST00000496567 CAMTA1Q9Y6Y1 1673 aa29.27■■■□□ 2.28
C9orf3-222ENST00000496567 SLIT2O94813 1529 aa29.27■■■□□ 2.28
C9orf3-222ENST00000496567 FNBP4Q8N3X1 1017 aaPredicted RBP29.26■■■□□ 2.28
C9orf3-222ENST00000496567 NWD2Q9ULI1 1742 aa29.26■■■□□ 2.27
C9orf3-222ENST00000496567 RGPD5Q99666 1765 aa29.25■■■□□ 2.27
C9orf3-222ENST00000496567 EVA1CP58658 441 aa29.24■■■□□ 2.27
C9orf3-222ENST00000496567 ANKRD24Q8TF21 1146 aa29.23■■■□□ 2.27
C9orf3-222ENST00000496567 COL5A2P05997 1499 aaPredicted RBP29.23■■■□□ 2.27
C9orf3-222ENST00000496567 ERBB3P21860 1342 aa29.22■■■□□ 2.27
C9orf3-222ENST00000496567 AFF2P51816 1311 aa29.21■■■□□ 2.27
C9orf3-222ENST00000496567 DIAPH1O60610 1272 aaKnown RBP29.21■■■□□ 2.27
C9orf3-222ENST00000496567 LTV1Q96GA3 475 aaPredicted RBP29.21■■■□□ 2.27
C9orf3-222ENST00000496567 CSB-PGBD3P0DP91 1061 aa29.2■■■□□ 2.26
C9orf3-222ENST00000496567 UNC5CLQ8IV45 518 aa29.2■■■□□ 2.26
C9orf3-222ENST00000496567 STRN4Q9NRL3 753 aa29.2■■■□□ 2.26
C9orf3-222ENST00000496567 USP21Q9UK80 565 aa29.2■■■□□ 2.26
C9orf3-222ENST00000496567 EIF4A2Q14240 407 aaKnown RBP29.19■■■□□ 2.26
C9orf3-222ENST00000496567 MIER1Q8N108 512 aa29.19■■■□□ 2.26
C9orf3-222ENST00000496567 COL3A1P02461 1466 aaPredicted RBP29.19■■■□□ 2.26
C9orf3-222ENST00000496567 BCL9LQ86UU0 1499 aa29.19■■■□□ 2.26
C9orf3-222ENST00000496567 NRAPQ86VF7 1730 aa29.18■■■□□ 2.26
C9orf3-222ENST00000496567 WDR17Q8IZU2 1322 aa29.18■■■□□ 2.26
C9orf3-222ENST00000496567 IL13P35225 146 aa29.16■■■□□ 2.26
C9orf3-222ENST00000496567 NUDCQ9Y266 331 aa29.16■■■□□ 2.26
C9orf3-222ENST00000496567 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.16■■■□□ 2.26
C9orf3-222ENST00000496567 FAM208AQ9UK61 1670 aaKnown RBP29.15■■■□□ 2.26
C9orf3-222ENST00000496567 CCER2I3L3R5 266 aa29.14■■■□□ 2.26
C9orf3-222ENST00000496567 LARP1Q6PKG0 1096 aaKnown RBP29.13■■■□□ 2.25
C9orf3-222ENST00000496567 TOM1L2Q6ZVM7 507 aa29.13■■■□□ 2.25
C9orf3-222ENST00000496567 MRS2Q9HD23 443 aa29.13■■■□□ 2.25
C9orf3-222ENST00000496567 ZNF772Q68DY9 489 aaPredicted RBP29.13■■■□□ 2.25
C9orf3-222ENST00000496567 NLRP2Q9NX02 1062 aa29.13■■■□□ 2.25
C9orf3-222ENST00000496567 CRB1P82279 1406 aa29.12■■■□□ 2.25
C9orf3-222ENST00000496567 VPS72Q15906 364 aa29.11■■■□□ 2.25
C9orf3-222ENST00000496567 CCDC184Q52MB2 194 aa29.1■■■□□ 2.25
C9orf3-222ENST00000496567 TRPC5Q9UL62 973 aaPredicted RBP29.1■■■□□ 2.25
C9orf3-222ENST00000496567 NBPF6Q5VWK0 638 aa29.09■■■□□ 2.25
C9orf3-222ENST00000496567 NBPF4Q96M43 638 aa29.09■■■□□ 2.25
C9orf3-222ENST00000496567 EYA1Q99502 592 aa29.09■■■□□ 2.25
C9orf3-222ENST00000496567 PHF23Q9BUL5 403 aaPredicted RBP29.09■■■□□ 2.25
C9orf3-222ENST00000496567 CARD10Q9BWT7 1032 aa29.09■■■□□ 2.25
C9orf3-222ENST00000496567 U2SURPO15042 1029 aaKnown RBP29.09■■■□□ 2.25
C9orf3-222ENST00000496567 CCDC9Q9Y3X0 531 aaKnown RBP29.09■■■□□ 2.25
C9orf3-222ENST00000496567 IGSF1Q8N6C5 1336 aa29.07■■■□□ 2.24
C9orf3-222ENST00000496567 QTRT2Q9H974 415 aaKnown RBP29.06■■■□□ 2.24
C9orf3-222ENST00000496567 ATRNO75882 1429 aa29.06■■■□□ 2.24
C9orf3-222ENST00000496567 RGPD2P0DJD1 1756 aa29.06■■■□□ 2.24
C9orf3-222ENST00000496567 SPATA31A5Q5VU36 1347 aa29.06■■■□□ 2.24
C9orf3-222ENST00000496567 SPATA31A7Q8IWB4 1347 aa29.06■■■□□ 2.24
C9orf3-222ENST00000496567 RGPD1P0DJD0 1748 aa29.06■■■□□ 2.24
C9orf3-222ENST00000496567 SPATA31A1Q5TZJ5 1347 aa29.05■■■□□ 2.24
C9orf3-222ENST00000496567 WDR43Q15061 677 aaKnown RBP eCLIP29.05■■■□□ 2.24
C9orf3-222ENST00000496567 U2AF1L5P0DN76 240 aaPredicted RBP29.04■■■□□ 2.24
C9orf3-222ENST00000496567 U2AF1Q01081 240 aaKnown RBP eCLIP29.04■■■□□ 2.24
C9orf3-222ENST00000496567 USP35Q9P2H5 1018 aa29.04■■■□□ 2.24
C9orf3-222ENST00000496567 THRAP3Q9Y2W1 955 aaKnown RBP29.03■■■□□ 2.24
C9orf3-222ENST00000496567 NCAPD2Q15021 1401 aa29.02■■■□□ 2.24
C9orf3-222ENST00000496567 TCP11L2Q8N4U5 519 aa29.02■■■□□ 2.24
C9orf3-222ENST00000496567 USHBP1Q8N6Y0 703 aa29.02■■■□□ 2.24
C9orf3-222ENST00000496567 SULT6B1Q6IMI4 303 aa29.01■■■□□ 2.24
C9orf3-222ENST00000496567 GJD4Q96KN9 370 aaPredicted RBP29.01■■■□□ 2.24
C9orf3-222ENST00000496567 PNISRQ8TF01 805 aaKnown RBP29■■■□□ 2.23
C9orf3-222ENST00000496567 KDRP35968 1356 aa28.99■■■□□ 2.23
C9orf3-222ENST00000496567 RGS17Q9UGC6 210 aaPredicted RBP28.99■■■□□ 2.23
C9orf3-222ENST00000496567 HMOX1P09601 288 aa28.98■■■□□ 2.23
C9orf3-222ENST00000496567 FCHSD2O94868 740 aa28.96■■■□□ 2.23
C9orf3-222ENST00000496567 BARGINQ6ZT62 677 aa28.96■■■□□ 2.23
C9orf3-222ENST00000496567 AEBP1Q8IUX7 1158 aa28.96■■■□□ 2.23
C9orf3-222ENST00000496567 RAPGEF4Q8WZA2 1011 aa28.96■■■□□ 2.23
C9orf3-222ENST00000496567 PNNQ9H307 717 aaKnown RBP28.96■■■□□ 2.23
C9orf3-222ENST00000496567 CDCA7Q9BWT1 371 aaPredicted RBP28.95■■■□□ 2.22
C9orf3-222ENST00000496567 ADAMTS8Q9UP79 889 aa28.95■■■□□ 2.22
C9orf3-222ENST00000496567 IL2RBP14784 551 aa28.94■■■□□ 2.22
C9orf3-222ENST00000496567 GLI3P10071 1580 aa28.94■■■□□ 2.22
C9orf3-222ENST00000496567 TATP17735 454 aaPredicted RBP28.93■■■□□ 2.22
C9orf3-222ENST00000496567 RBM6P78332 1123 aaKnown RBP28.93■■■□□ 2.22
C9orf3-222ENST00000496567 RSPH6AQ9H0K4 717 aa28.92■■■□□ 2.22
C9orf3-222ENST00000496567 FAM98CQ17RN3 349 aaKnown RBP28.92■■■□□ 2.22
C9orf3-222ENST00000496567 FAM9BQ8IZU0 186 aa28.91■■■□□ 2.22
C9orf3-222ENST00000496567 PLEKHG2Q9H7P9 1386 aa28.91■■■□□ 2.22
C9orf3-222ENST00000496567 DISP2A7MBM2 1401 aa28.9■■■□□ 2.22
C9orf3-222ENST00000496567 RXRBP28702 533 aa28.9■■■□□ 2.22
C9orf3-222ENST00000496567 WNK3Q9BYP7 1800 aa28.89■■■□□ 2.22
C9orf3-222ENST00000496567 NEFMP07197 916 aa28.89■■■□□ 2.22
C9orf3-222ENST00000496567 PRKAR2BP31323 418 aa28.89■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms