RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 PTK2Q05397 1052 aa7.83□□□□□ -1.16
PTCD3-218ENST00000493430 IRF7Q92985 503 aa7.83□□□□□ -1.16
PTCD3-218ENST00000493430 GOPCQ9HD26 462 aa7.83□□□□□ -1.16
PTCD3-218ENST00000493430 CDV3Q9UKY7 258 aaKnown RBP7.83□□□□□ -1.16
PTCD3-218ENST00000493430 GPSM3Q9Y4H4 160 aa7.83□□□□□ -1.16
PTCD3-218ENST00000493430 H3BM21 787 aa7.82□□□□□ -1.16
PTCD3-218ENST00000493430 MAN1A2O60476 641 aa7.82□□□□□ -1.16
PTCD3-218ENST00000493430 LINC00528Q8N1L1 170 aa7.82□□□□□ -1.16
PTCD3-218ENST00000493430 MEIOBQ8N635 442 aa7.82□□□□□ -1.16
PTCD3-218ENST00000493430 SLC10A4Q96EP9 437 aa7.82□□□□□ -1.16
PTCD3-218ENST00000493430 USP17L8P0C7I0 530 aa7.81□□□□□ -1.16
PTCD3-218ENST00000493430 RFC5P40937 340 aa7.81□□□□□ -1.16
PTCD3-218ENST00000493430 VEGFBP49765 207 aa7.81□□□□□ -1.16
PTCD3-218ENST00000493430 NEUROD2Q15784 382 aa7.81□□□□□ -1.16
PTCD3-218ENST00000493430 PCMTD1Q96MG8 357 aaPredicted RBP7.81□□□□□ -1.16
PTCD3-218ENST00000493430 KCTD15Q96SI1 283 aaPredicted RBP7.81□□□□□ -1.16
PTCD3-218ENST00000493430 TSEN34Q9BSV6 310 aaKnown RBP7.81□□□□□ -1.16
PTCD3-218ENST00000493430 PGPEP1Q9NXJ5 209 aa7.81□□□□□ -1.16
PTCD3-218ENST00000493430 STK17AQ9UEE5 414 aa7.81□□□□□ -1.16
PTCD3-218ENST00000493430 SOBPA7XYQ1 873 aa7.8□□□□□ -1.16
PTCD3-218ENST00000493430 DHX9Q08211 1270 aaKnown RBP7.8□□□□□ -1.16
PTCD3-218ENST00000493430 PPP1R26Q5T8A7 1209 aaPredicted RBP7.8□□□□□ -1.16
PTCD3-218ENST00000493430 EPS8L1Q8TE68 723 aa7.8□□□□□ -1.16
PTCD3-218ENST00000493430 TMEM259Q4ZIN3 620 aa7.79□□□□□ -1.16
PTCD3-218ENST00000493430 IL27Q8NEV9 243 aa7.79□□□□□ -1.16
PTCD3-218ENST00000493430 ADAM32Q8TC27 787 aa7.79□□□□□ -1.16
PTCD3-218ENST00000493430 HMX1Q9NP08 348 aaPredicted RBP7.79□□□□□ -1.16
PTCD3-218ENST00000493430 GMPRP36959 345 aa7.78□□□□□ -1.16
PTCD3-218ENST00000493430 OCSTAMPQ9BR26 566 aa7.78□□□□□ -1.16
PTCD3-218ENST00000493430 SOS2Q07890 1332 aaPredicted RBP7.77□□□□□ -1.17
PTCD3-218ENST00000493430 NBPF20Q3BBV1 942 aa7.76□□□□□ -1.17
PTCD3-218ENST00000493430 Q6ZVU0 165 aa7.76□□□□□ -1.17
PTCD3-218ENST00000493430 ERBB4Q15303 1308 aa7.76□□□□□ -1.17
PTCD3-218ENST00000493430 CBLBQ13191 982 aa7.75□□□□□ -1.17
PTCD3-218ENST00000493430 INTS6LQ5JSJ4 861 aaKnown RBP7.75□□□□□ -1.17
PTCD3-218ENST00000493430 DZIP3Q86Y13 1208 aaKnown RBP7.75□□□□□ -1.17
PTCD3-218ENST00000493430 TTLL8A6PVC2 850 aa7.74□□□□□ -1.17
PTCD3-218ENST00000493430 DNMT3LQ9UJW3 386 aa7.74□□□□□ -1.17
PTCD3-218ENST00000493430 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.73□□□□□ -1.17
PTCD3-218ENST00000493430 FAM181BA6NEQ2 426 aa7.72□□□□□ -1.17
PTCD3-218ENST00000493430 SPINT1O43278 529 aa7.72□□□□□ -1.17
PTCD3-218ENST00000493430 PPFIA3O75145 1194 aa7.72□□□□□ -1.17
PTCD3-218ENST00000493430 VSIG8P0DPA2 414 aa7.72□□□□□ -1.17
PTCD3-218ENST00000493430 BRPF1P55201 1214 aaPredicted RBP7.72□□□□□ -1.17
PTCD3-218ENST00000493430 TRIM34Q9BYJ4 488 aa7.72□□□□□ -1.17
PTCD3-218ENST00000493430 RAB15P59190 212 aa7.71□□□□□ -1.18
PTCD3-218ENST00000493430 ZSCAN1Q8NBB4 408 aa7.71□□□□□ -1.18
PTCD3-218ENST00000493430 FIGNL2A6NMB9 653 aa7.7□□□□□ -1.18
PTCD3-218ENST00000493430 TRIM52Q96A61 297 aa7.7□□□□□ -1.18
PTCD3-218ENST00000493430 AGBL1Q96MI9 1066 aa7.7□□□□□ -1.18
PTCD3-218ENST00000493430 TMPRSS4Q9NRS4 437 aa7.7□□□□□ -1.18
PTCD3-218ENST00000493430 ZBBXA8MT70 800 aa7.69□□□□□ -1.18
PTCD3-218ENST00000493430 ESPNB1AK53 854 aa7.69□□□□□ -1.18
PTCD3-218ENST00000493430 ERVH48-1M5A8F1 160 aa7.69□□□□□ -1.18
PTCD3-218ENST00000493430 RELBQ01201 579 aa7.69□□□□□ -1.18
PTCD3-218ENST00000493430 ZNF784Q8NCA9 323 aaPredicted RBP7.69□□□□□ -1.18
PTCD3-218ENST00000493430 PTSQ03393 145 aa7.68□□□□□ -1.18
PTCD3-218ENST00000493430 SEPT12Q8IYM1 358 aa7.68□□□□□ -1.18
PTCD3-218ENST00000493430 GJD4Q96KN9 370 aaPredicted RBP7.68□□□□□ -1.18
PTCD3-218ENST00000493430 LORP23490 312 aaPredicted RBP7.67□□□□□ -1.18
PTCD3-218ENST00000493430 CTSOP43234 321 aaPredicted RBP7.67□□□□□ -1.18
PTCD3-218ENST00000493430 BANK1Q8NDB2 785 aa7.67□□□□□ -1.18
PTCD3-218ENST00000493430 INSM2Q96T92 566 aaPredicted RBP7.67□□□□□ -1.18
PTCD3-218ENST00000493430 ZNF395Q9H8N7 513 aaPredicted RBP7.67□□□□□ -1.18
PTCD3-218ENST00000493430 PCDHB9Q9Y5E1 797 aa7.67□□□□□ -1.18
PTCD3-218ENST00000493430 LILRA1O75019 489 aa7.66□□□□□ -1.18
PTCD3-218ENST00000493430 ADH1AP07327 375 aa7.66□□□□□ -1.18
PTCD3-218ENST00000493430 POLMQ9NP87 494 aaPredicted RBP7.66□□□□□ -1.18
PTCD3-218ENST00000493430 FBXO45P0C2W1 286 aa7.65□□□□□ -1.18
PTCD3-218ENST00000493430 ADD1P35611 737 aaKnown RBP7.65□□□□□ -1.18
PTCD3-218ENST00000493430 CCDC125Q86Z20 511 aa7.65□□□□□ -1.18
PTCD3-218ENST00000493430 CCDC155Q8N6L0 562 aa7.65□□□□□ -1.18
PTCD3-218ENST00000493430 GIGYF1O75420 1035 aaPredicted RBP7.64□□□□□ -1.19
PTCD3-218ENST00000493430 PTGIRP43119 386 aa7.64□□□□□ -1.19
PTCD3-218ENST00000493430 TPRNQ4KMQ1 711 aa7.64□□□□□ -1.19
PTCD3-218ENST00000493430 APBB1O00213 710 aa7.63□□□□□ -1.19
PTCD3-218ENST00000493430 MCCD1P59942 119 aaPredicted RBP7.63□□□□□ -1.19
PTCD3-218ENST00000493430 RNF217Q8TC41 542 aa7.63□□□□□ -1.19
PTCD3-218ENST00000493430 ZNF592Q92610 1267 aa7.63□□□□□ -1.19
PTCD3-218ENST00000493430 CYLDQ9NQC7 956 aa7.63□□□□□ -1.19
PTCD3-218ENST00000493430 SLC35F4A4IF30 521 aa7.62□□□□□ -1.19
PTCD3-218ENST00000493430 SOCS7O14512 581 aa7.62□□□□□ -1.19
PTCD3-218ENST00000493430 NR1H3Q13133 447 aa7.62□□□□□ -1.19
PTCD3-218ENST00000493430 RNF20Q5VTR2 975 aa7.62□□□□□ -1.19
PTCD3-218ENST00000493430 KDF1Q8NAX2 398 aaPredicted RBP7.62□□□□□ -1.19
PTCD3-218ENST00000493430 NANOS1Q8WY41 292 aaKnown RBP7.62□□□□□ -1.19
PTCD3-218ENST00000493430 ZNF330Q9Y3S2 320 aaPredicted RBP7.62□□□□□ -1.19
PTCD3-218ENST00000493430 GPR161Q8N6U8 529 aaKnown RBP7.61□□□□□ -1.19
PTCD3-218ENST00000493430 MTMR14Q8NCE2 650 aa7.61□□□□□ -1.19
PTCD3-218ENST00000493430 NDUFB9Q9Y6M9 179 aa7.61□□□□□ -1.19
PTCD3-218ENST00000493430 ITGA6P23229 1130 aa7.6□□□□□ -1.19
PTCD3-218ENST00000493430 ATP5J2-PTCD1G3V325 749 aa7.59□□□□□ -1.19
PTCD3-218ENST00000493430 FOXD4L5Q5VV16 416 aaPredicted RBP7.59□□□□□ -1.19
PTCD3-218ENST00000493430 LYSMD3Q7Z3D4 306 aa7.59□□□□□ -1.19
PTCD3-218ENST00000493430 SNRKQ9NRH2 765 aa7.59□□□□□ -1.19
PTCD3-218ENST00000493430 RNF144AP50876 292 aaPredicted RBP7.58□□□□□ -1.2
PTCD3-218ENST00000493430 CC2D2BQ6DHV5 1058 aa7.58□□□□□ -1.2
PTCD3-218ENST00000493430 SV2AQ7L0J3 742 aa7.58□□□□□ -1.2
PTCD3-218ENST00000493430 VWA5B2Q8N398 1253 aa7.58□□□□□ -1.2
PTCD3-218ENST00000493430 CNTNAP3BQ96NU0 1288 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms