RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TRIM50Q86XT4 487 aa7.33□□□□□ -1.24
VPS13A-212ENST00000493341 OCSTAMPQ9BR26 566 aa7.33□□□□□ -1.24
VPS13A-212ENST00000493341 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-212ENST00000493341 NOD1Q9Y239 953 aa7.33□□□□□ -1.24
VPS13A-212ENST00000493341 ERBB3P21860 1342 aa7.32□□□□□ -1.24
VPS13A-212ENST00000493341 ARMC2Q8NEN0 867 aa7.32□□□□□ -1.24
VPS13A-212ENST00000493341 ADAM32Q8TC27 787 aa7.32□□□□□ -1.24
VPS13A-212ENST00000493341 ANO2Q9NQ90 1003 aa7.32□□□□□ -1.24
VPS13A-212ENST00000493341 CCNYL3P0C7X3 344 aa7.32□□□□□ -1.24
VPS13A-212ENST00000493341 ZNF326Q5BKZ1 582 aaKnown RBP7.32□□□□□ -1.24
VPS13A-212ENST00000493341 TRAF7Q6Q0C0 670 aa7.32□□□□□ -1.24
VPS13A-212ENST00000493341 MRPL50Q8N5N7 158 aaKnown RBP7.32□□□□□ -1.24
VPS13A-212ENST00000493341 PRIMPOLQ96LW4 560 aa7.32□□□□□ -1.24
VPS13A-212ENST00000493341 RBM19Q9Y4C8 960 aaKnown RBP7.32□□□□□ -1.24
VPS13A-212ENST00000493341 H3BRB1 525 aa7.31□□□□□ -1.24
VPS13A-212ENST00000493341 TCF3P15923 654 aa7.31□□□□□ -1.24
VPS13A-212ENST00000493341 ZNF211Q13398 564 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-212ENST00000493341 NBPF14Q5TI25 921 aa7.31□□□□□ -1.24
VPS13A-212ENST00000493341 ZBTB33Q86T24 672 aa7.31□□□□□ -1.24
VPS13A-212ENST00000493341 LARGE2Q8N3Y3 721 aa7.31□□□□□ -1.24
VPS13A-212ENST00000493341 TUT1Q9H6E5 874 aaKnown RBP7.31□□□□□ -1.24
VPS13A-212ENST00000493341 EVA1BQ9NVM1 165 aa7.31□□□□□ -1.24
VPS13A-212ENST00000493341 BHMG1C9JSJ3 638 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-212ENST00000493341 OXLD1Q5BKU9 147 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 NPAS4Q8IUM7 802 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 C1orf216Q8TAB5 229 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 GPKOWQ92917 476 aaPredicted RBP eCLIP7.3□□□□□ -1.24
VPS13A-212ENST00000493341 THAP11Q96EK4 314 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 NUDT12Q9BQG2 462 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 ARHGAP9Q9BRR9 750 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 KIAA1024Q9UPX6 916 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 LGR5O75473 907 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 SEC13P55735 322 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 GLYCTKQ8IVS8 523 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 CHIC2Q9UKJ5 165 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 DOLKQ9UPQ8 538 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 PCDHB3Q9Y5E6 796 aa7.3□□□□□ -1.24
VPS13A-212ENST00000493341 NR1I2O75469 434 aa7.29□□□□□ -1.24
VPS13A-212ENST00000493341 PPP4CP60510 307 aa7.29□□□□□ -1.24
VPS13A-212ENST00000493341 CCDC102BQ68D86 513 aa7.29□□□□□ -1.24
VPS13A-212ENST00000493341 POTEMA6NI47 508 aa7.28□□□□□ -1.24
VPS13A-212ENST00000493341 ZBTB7BO15156 539 aaPredicted RBP7.28□□□□□ -1.24
VPS13A-212ENST00000493341 MAPK1P28482 360 aa7.28□□□□□ -1.24
VPS13A-212ENST00000493341 GTF2IP78347 998 aa7.28□□□□□ -1.24
VPS13A-212ENST00000493341 PSME1Q06323 249 aa7.28□□□□□ -1.24
VPS13A-212ENST00000493341 DZIP3Q86Y13 1208 aaKnown RBP7.28□□□□□ -1.24
VPS13A-212ENST00000493341 APLP1P51693 650 aa7.28□□□□□ -1.24
VPS13A-212ENST00000493341 OCLNQ16625 522 aa7.28□□□□□ -1.24
VPS13A-212ENST00000493341 SIX5Q8N196 739 aa7.28□□□□□ -1.24
VPS13A-212ENST00000493341 HINFPQ9BQA5 517 aa7.28□□□□□ -1.24
VPS13A-212ENST00000493341 CARD14Q9BXL6 1004 aa7.28□□□□□ -1.24
VPS13A-212ENST00000493341 CXXC1Q9P0U4 656 aaPredicted RBP7.28□□□□□ -1.24
VPS13A-212ENST00000493341 SFI1A8K8P3 1242 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 TPCN2Q8NHX9 752 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 CCDC85AQ96PX6 553 aaPredicted RBP7.27□□□□□ -1.25
VPS13A-212ENST00000493341 MAGEB6P1A0A0J9YX57 407 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 ICMTO60725 284 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 DKK1O94907 266 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 PBX2P40425 430 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 TAGLNQ01995 201 aaKnown RBP7.27□□□□□ -1.25
VPS13A-212ENST00000493341 POTEGQ6S5H5 508 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 TAS1R3Q7RTX0 852 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 MKNK1Q9BUB5 465 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 EGFL7Q9UHF1 273 aa7.27□□□□□ -1.25
VPS13A-212ENST00000493341 GTF3C2Q8WUA4 911 aaPredicted RBP7.26□□□□□ -1.25
VPS13A-212ENST00000493341 LCE2DQ5TA82 110 aaPredicted RBP7.25□□□□□ -1.25
VPS13A-212ENST00000493341 SPSB2Q99619 263 aa7.25□□□□□ -1.25
VPS13A-212ENST00000493341 HPS5Q9UPZ3 1129 aa7.25□□□□□ -1.25
VPS13A-212ENST00000493341 GIGYF1O75420 1035 aaPredicted RBP7.25□□□□□ -1.25
VPS13A-212ENST00000493341 DXOO77932 396 aaKnown RBP7.25□□□□□ -1.25
VPS13A-212ENST00000493341 MTMR3Q13615 1198 aa7.25□□□□□ -1.25
VPS13A-212ENST00000493341 FAM160A2Q8N612 972 aaPredicted RBP7.25□□□□□ -1.25
VPS13A-212ENST00000493341 PRDM9Q9NQV7 894 aa7.25□□□□□ -1.25
VPS13A-212ENST00000493341 SEPT3Q9UH03 358 aa7.25□□□□□ -1.25
VPS13A-212ENST00000493341 C21orf2O43822 256 aa7.24□□□□□ -1.25
VPS13A-212ENST00000493341 CCDC24Q8N4L8 307 aa7.24□□□□□ -1.25
VPS13A-212ENST00000493341 HMGB1P09429 215 aaKnown RBP7.23□□□□□ -1.25
VPS13A-212ENST00000493341 MSS51Q4VC12 460 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 UNC93B1Q9H1C4 597 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 DCTN4Q9UJW0 460 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 GOLGA8CPA6NN73 597 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 BCAMP50895 628 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 AGERQ15109 404 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 SH3BP5LQ7L8J4 393 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 FBXO33Q7Z6M2 555 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 ZSCAN29Q8IWY8 852 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-212ENST00000493341 ANKK1Q8NFD2 765 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 ASB16Q96NS5 453 aa7.23□□□□□ -1.25
VPS13A-212ENST00000493341 DNMT3AQ9Y6K1 912 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-212ENST00000493341 MMP16P51512 607 aa7.22□□□□□ -1.25
VPS13A-212ENST00000493341 FKBP4Q02790 459 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS13A-212ENST00000493341 CAPN12Q6ZSI9 719 aa7.22□□□□□ -1.25
VPS13A-212ENST00000493341 SOWAHBA6NEL2 793 aa7.22□□□□□ -1.25
VPS13A-212ENST00000493341 TSNAXIP1Q2TAA8 658 aa7.22□□□□□ -1.25
VPS13A-212ENST00000493341 PCDH10Q9P2E7 1040 aa7.22□□□□□ -1.25
VPS13A-212ENST00000493341 TSR3Q9UJK0 312 aaKnown RBP7.22□□□□□ -1.25
VPS13A-212ENST00000493341 PCDHGA11Q9Y5H2 935 aa7.22□□□□□ -1.25
VPS13A-212ENST00000493341 TK2O00142 265 aa7.21□□□□□ -1.26
VPS13A-212ENST00000493341 HSP90B1P14625 803 aaKnown RBP7.21□□□□□ -1.26
VPS13A-212ENST00000493341 VAMP1P23763 118 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms