RNA–Protein interactions for RNA: ENST00000490751.1

LDB1-204, Transcript of LIM domain binding 1, humanhuman

TSL 2

Gene LDB1, Length 762 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-204ENST00000490751 CRB1P82279 1406 aa44.08■■■■■ 4.65
LDB1-204ENST00000490751 RGPD5Q99666 1765 aa44.07■■■■■ 4.65
LDB1-204ENST00000490751 DEFB132Q7Z7B7 95 aa44.06■■■■■ 4.64
LDB1-204ENST00000490751 AXIN2Q9Y2T1 843 aa44.05■■■■■ 4.64
LDB1-204ENST00000490751 THRAP3Q9Y2W1 955 aaKnown RBP44.05■■■■■ 4.64
LDB1-204ENST00000490751 RGPD1P0DJD0 1748 aa44.03■■■■■ 4.64
LDB1-204ENST00000490751 TMF1P82094 1093 aa44.03■■■■■ 4.64
LDB1-204ENST00000490751 PARP4Q9UKK3 1724 aaKnown RBP44■■■■■ 4.63
LDB1-204ENST00000490751 CCER1Q8TC90 406 aaPredicted RBP43.99■■■■■ 4.63
LDB1-204ENST00000490751 TOM1L2Q6ZVM7 507 aa43.98■■■■■ 4.63
LDB1-204ENST00000490751 ABCC6O95255 1503 aa43.98■■■■■ 4.63
LDB1-204ENST00000490751 WDR17Q8IZU2 1322 aa43.98■■■■■ 4.63
LDB1-204ENST00000490751 LTN1O94822 1766 aa43.96■■■■■ 4.63
LDB1-204ENST00000490751 PDE3BQ13370 1112 aa43.96■■■■■ 4.63
LDB1-204ENST00000490751 OVOS2A0A0J9YW53 1432 aa43.95■■■■■ 4.63
LDB1-204ENST00000490751 OVOS2Q6IE36 1432 aa43.95■■■■■ 4.63
LDB1-204ENST00000490751 TNS1Q9HBL0 1735 aaKnown RBP43.93■■■■■ 4.62
LDB1-204ENST00000490751 WNK3Q9BYP7 1800 aa43.93■■■■■ 4.62
LDB1-204ENST00000490751 BAG6P46379 1132 aa43.92■■■■■ 4.62
LDB1-204ENST00000490751 FAM196AQ6ZSG2 479 aa43.92■■■■■ 4.62
LDB1-204ENST00000490751 ANKRD36BQ8N2N9 1353 aa43.92■■■■■ 4.62
LDB1-204ENST00000490751 CSB-PGBD3P0DP91 1061 aa43.89■■■■■ 4.62
LDB1-204ENST00000490751 LRRC37A3O60309 1634 aa43.88■■■■■ 4.62
LDB1-204ENST00000490751 CDCA8Q53HL2 280 aa43.86■■■■■ 4.61
LDB1-204ENST00000490751 TRIM37O94972 964 aa43.82■■■■■ 4.61
LDB1-204ENST00000490751 CARD10Q9BWT7 1032 aa43.82■■■■■ 4.61
LDB1-204ENST00000490751 DISP2A7MBM2 1401 aa43.81■■■■■ 4.6
LDB1-204ENST00000490751 EN1Q05925 392 aaPredicted RBP43.8■■■■■ 4.6
LDB1-204ENST00000490751 MYOM1P52179 1685 aa43.78■■■■■ 4.6
LDB1-204ENST00000490751 DDB1Q16531 1140 aa43.78■■■■■ 4.6
LDB1-204ENST00000490751 COG3Q96JB2 828 aa43.78■■■■■ 4.6
LDB1-204ENST00000490751 ERBB3P21860 1342 aa43.76■■■■■ 4.6
LDB1-204ENST00000490751 CCDC7Q96M83 1385 aa43.76■■■■■ 4.6
LDB1-204ENST00000490751 CDCA7Q9BWT1 371 aaPredicted RBP43.75■■■■■ 4.59
LDB1-204ENST00000490751 PEAK1Q9H792 1746 aa43.75■■■■■ 4.59
LDB1-204ENST00000490751 OVOS2A0A0G2JMS6 1433 aa43.73■■■■■ 4.59
LDB1-204ENST00000490751 KIF20BQ96Q89 1820 aa43.69■■■■■ 4.58
LDB1-204ENST00000490751 ANKRD24Q8TF21 1146 aa43.69■■■■■ 4.58
LDB1-204ENST00000490751 C11orf95C9JLR9 678 aaPredicted RBP43.68■■■■■ 4.58
LDB1-204ENST00000490751 APBA3O96018 575 aa43.68■■■■■ 4.58
LDB1-204ENST00000490751 NLRP2Q9NX02 1062 aa43.68■■■■■ 4.58
LDB1-204ENST00000490751 FYB1O15117 783 aa43.66■■■■■ 4.58
LDB1-204ENST00000490751 EZH2Q15910 746 aaKnown RBP43.66■■■■■ 4.58
LDB1-204ENST00000490751 IP6K1Q92551 441 aa43.66■■■■■ 4.58
LDB1-204ENST00000490751 SBF2Q86WG5 1849 aa43.65■■■■■ 4.58
LDB1-204ENST00000490751 GGNBP2Q9H3C7 697 aa43.65■■■■■ 4.58
LDB1-204ENST00000490751 MAP3K19Q56UN5 1328 aa43.64■■■■■ 4.58
LDB1-204ENST00000490751 FBLN1P23142 703 aa43.63■■■■■ 4.57
LDB1-204ENST00000490751 CAMKK2Q96RR4 588 aa43.63■■■■■ 4.57
LDB1-204ENST00000490751 EIF4G2P78344 907 aaKnown RBP eCLIP43.62■■■■■ 4.571e-10■■■□□ 17
LDB1-204ENST00000490751 MARCH10Q8NA82 808 aaPredicted RBP43.61■■■■■ 4.57
LDB1-204ENST00000490751 FAM208AQ9UK61 1670 aaKnown RBP43.61■■■■■ 4.57
LDB1-204ENST00000490751 TNS2Q63HR2 1409 aa43.59■■■■■ 4.57
LDB1-204ENST00000490751 PARD3Q8TEW0 1356 aa43.59■■■■■ 4.57
LDB1-204ENST00000490751 NSD3Q9BZ95 1437 aa43.58■■■■■ 4.57
LDB1-204ENST00000490751 EXOC5O00471 708 aa43.58■■■■■ 4.57
LDB1-204ENST00000490751 HSPA5P11021 654 aaKnown RBP43.58■■■■■ 4.57
LDB1-204ENST00000490751 CARD14Q9BXL6 1004 aa43.58■■■■■ 4.57
LDB1-204ENST00000490751 RREB1Q92766 1687 aa43.57■■■■■ 4.57
LDB1-204ENST00000490751 AMPHP49418 695 aa43.57■■■■■ 4.57
LDB1-204ENST00000490751 HOXC9P31274 260 aa43.56■■■■■ 4.56
LDB1-204ENST00000490751 LTV1Q96GA3 475 aaPredicted RBP43.56■■■■■ 4.56
LDB1-204ENST00000490751 PSDA5PKW4 1024 aaPredicted RBP43.54■■■■■ 4.56
LDB1-204ENST00000490751 POLR3GLQ9BT43 218 aa43.54■■■■■ 4.56
LDB1-204ENST00000490751 IL2RBP14784 551 aa43.53■■■■■ 4.56
LDB1-204ENST00000490751 BCL9O00512 1426 aa43.53■■■■■ 4.56
LDB1-204ENST00000490751 RRS1Q15050 365 aaKnown RBP43.52■■■■■ 4.56
LDB1-204ENST00000490751 RTL1A6NKG5 1358 aa43.52■■■■■ 4.56
LDB1-204ENST00000490751 NUP188Q5SRE5 1749 aa43.5■■■■■ 4.55
LDB1-204ENST00000490751 SRCAPQ6ZRS2 3230 aa43.48■■■■■ 4.55
LDB1-204ENST00000490751 RGPD2P0DJD1 1756 aa43.47■■■■■ 4.55
LDB1-204ENST00000490751 RGPD3A6NKT7 1758 aaPredicted RBP43.46■■■■■ 4.55
LDB1-204ENST00000490751 RGPD4Q7Z3J3 1758 aa43.46■■■■■ 4.55
LDB1-204ENST00000490751 PTF1AQ7RTS3 328 aa43.45■■■■■ 4.55
LDB1-204ENST00000490751 BCL11BQ9C0K0 894 aaPredicted RBP43.45■■■■■ 4.55
LDB1-204ENST00000490751 R3HDM1Q15032 1099 aaKnown RBP43.44■■■■■ 4.54
LDB1-204ENST00000490751 PLSCR1O15162 318 aa43.37■■■■■ 4.53
LDB1-204ENST00000490751 CGNL1Q0VF96 1302 aa43.37■■■■■ 4.53
LDB1-204ENST00000490751 NHSQ6T4R5 1651 aa43.37■■■■■ 4.53
LDB1-204ENST00000490751 LRP5O75197 1615 aa43.36■■■■■ 4.53
LDB1-204ENST00000490751 FLT4P35916 1363 aa43.35■■■■■ 4.53
LDB1-204ENST00000490751 SMG6Q86US8 1419 aaKnown RBP43.35■■■■■ 4.53
LDB1-204ENST00000490751 KIF24Q5T7B8 1368 aa43.34■■■■■ 4.53
LDB1-204ENST00000490751 INSRP06213 1382 aa43.32■■■■■ 4.53
LDB1-204ENST00000490751 HSP90AB2PQ58FF8 381 aa43.32■■■■■ 4.53
LDB1-204ENST00000490751 NBPF14Q5TI25 921 aa43.31■■■■■ 4.52
LDB1-204ENST00000490751 ANKRD26Q9UPS8 1709 aa43.31■■■■■ 4.52
LDB1-204ENST00000490751 KCNQ2O43526 872 aa43.29■■■■■ 4.52
LDB1-204ENST00000490751 NBPF6Q5VWK0 638 aa43.29■■■■■ 4.52
LDB1-204ENST00000490751 ACSBG1Q96GR2 724 aa43.29■■■■■ 4.52
LDB1-204ENST00000490751 NBPF4Q96M43 638 aa43.29■■■■■ 4.52
LDB1-204ENST00000490751 EMILIN1Q9Y6C2 1016 aa43.29■■■■■ 4.52
LDB1-204ENST00000490751 MEGF6O75095 1541 aa43.28■■■■■ 4.52
LDB1-204ENST00000490751 MAP2P11137 1827 aaKnown RBP43.26■■■■■ 4.52
LDB1-204ENST00000490751 SHANK3Q9BYB0 1731 aa43.25■■■■■ 4.51
LDB1-204ENST00000490751 USHBP1Q8N6Y0 703 aa43.25■■■■■ 4.51
LDB1-204ENST00000490751 DDX54Q8TDD1 881 aaKnown RBP43.25■■■■■ 4.51
LDB1-204ENST00000490751 PANK3Q9H999 370 aa43.25■■■■■ 4.51
LDB1-204ENST00000490751 KAT6BQ8WYB5 2073 aa43.23■■■■■ 4.51
LDB1-204ENST00000490751 BTAF1O14981 1849 aa43.21■■■■■ 4.51
Retrieved 100 of 20,778 RNA–protein pairs in 147.4 ms