RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 SLC10A4Q96EP9 437 aa8.97□□□□□ -0.97
HMGN1-218ENST00000490032 CCDC116Q8IYX3 515 aa8.96□□□□□ -0.98
HMGN1-218ENST00000490032 ZFAND3Q9H8U3 227 aa8.96□□□□□ -0.98
HMGN1-218ENST00000490032 MRPL14Q6P1L8 145 aaKnown RBP8.95□□□□□ -0.98
HMGN1-218ENST00000490032 KCTD15Q96SI1 283 aaPredicted RBP8.95□□□□□ -0.98
HMGN1-218ENST00000490032 MTMR14Q8NCE2 650 aa8.94□□□□□ -0.98
HMGN1-218ENST00000490032 EMILIN1Q9Y6C2 1016 aa8.94□□□□□ -0.98
HMGN1-218ENST00000490032 ZFP42Q96MM3 310 aa8.93□□□□□ -0.98
HMGN1-218ENST00000490032 GPR37L1O60883 481 aa8.92□□□□□ -0.98
HMGN1-218ENST00000490032 MEIOBQ8N635 442 aa8.92□□□□□ -0.98
HMGN1-218ENST00000490032 SNRKQ9NRH2 765 aa8.92□□□□□ -0.98
HMGN1-218ENST00000490032 ZBBXA8MT70 800 aa8.91□□□□□ -0.98
HMGN1-218ENST00000490032 SCARF1Q14162 830 aa8.91□□□□□ -0.98
HMGN1-218ENST00000490032 NBPF20Q3BBV1 942 aa8.91□□□□□ -0.98
HMGN1-218ENST00000490032 INTS6LQ5JSJ4 861 aaKnown RBP8.91□□□□□ -0.98
HMGN1-218ENST00000490032 PPP1R26Q5T8A7 1209 aaPredicted RBP8.91□□□□□ -0.98
HMGN1-218ENST00000490032 DHX9Q08211 1270 aaKnown RBP8.9□□□□□ -0.98
HMGN1-218ENST00000490032 LCE2AQ5TA79 106 aaPredicted RBP8.9□□□□□ -0.98
HMGN1-218ENST00000490032 DZIP3Q86Y13 1208 aaKnown RBP8.9□□□□□ -0.98
HMGN1-218ENST00000490032 PURBQ96QR8 312 aaKnown RBP8.9□□□□□ -0.98
HMGN1-218ENST00000490032 ESPNB1AK53 854 aa8.89□□□□□ -0.99
HMGN1-218ENST00000490032 APBB1O00213 710 aa8.89□□□□□ -0.99
HMGN1-218ENST00000490032 FBXO45P0C2W1 286 aa8.89□□□□□ -0.99
HMGN1-218ENST00000490032 TREML4Q6UXN2 200 aa8.89□□□□□ -0.99
HMGN1-218ENST00000490032 PGPEP1Q9NXJ5 209 aa8.89□□□□□ -0.99
HMGN1-218ENST00000490032 NDUFB9Q9Y6M9 179 aa8.89□□□□□ -0.99
HMGN1-218ENST00000490032 Q6ZVU0 165 aa8.88□□□□□ -0.99
HMGN1-218ENST00000490032 LINC00528Q8N1L1 170 aa8.88□□□□□ -0.99
HMGN1-218ENST00000490032 NFX1Q12986 1120 aaKnown RBP8.87□□□□□ -0.99
HMGN1-218ENST00000490032 NR1H3Q13133 447 aa8.86□□□□□ -0.99
HMGN1-218ENST00000490032 SEPT12Q8IYM1 358 aa8.86□□□□□ -0.99
HMGN1-218ENST00000490032 TSEN34Q9BSV6 310 aaKnown RBP8.86□□□□□ -0.99
HMGN1-218ENST00000490032 TERTO14746 1132 aaKnown RBP8.85□□□□□ -0.99
HMGN1-218ENST00000490032 UPP2O95045 317 aa8.85□□□□□ -0.99
HMGN1-218ENST00000490032 WFS1O76024 890 aa8.84□□□□□ -0.99
HMGN1-218ENST00000490032 MCCD1P59942 119 aaPredicted RBP8.84□□□□□ -0.99
HMGN1-218ENST00000490032 CBLBQ13191 982 aa8.84□□□□□ -0.99
HMGN1-218ENST00000490032 C6orf118Q5T5N4 469 aa8.84□□□□□ -0.99
HMGN1-218ENST00000490032 ERVH48-1M5A8F1 160 aa8.83□□□□□ -1
HMGN1-218ENST00000490032 BMP2P12643 396 aa8.83□□□□□ -1
HMGN1-218ENST00000490032 TMPRSS4Q9NRS4 437 aa8.83□□□□□ -1
HMGN1-218ENST00000490032 NXF1Q9UBU9 619 aaKnown RBP8.83□□□□□ -1
HMGN1-218ENST00000490032 PCDHB9Q9Y5E1 797 aa8.83□□□□□ -1
HMGN1-218ENST00000490032 SOS2Q07890 1332 aaPredicted RBP8.82□□□□□ -1
HMGN1-218ENST00000490032 NPAS3Q8IXF0 933 aa8.82□□□□□ -1
HMGN1-218ENST00000490032 ZNF592Q92610 1267 aa8.82□□□□□ -1
HMGN1-218ENST00000490032 LILRA1O75019 489 aa8.81□□□□□ -1
HMGN1-218ENST00000490032 CCDC125Q86Z20 511 aa8.81□□□□□ -1
HMGN1-218ENST00000490032 ZNF784Q8NCA9 323 aaPredicted RBP8.81□□□□□ -1
HMGN1-218ENST00000490032 TBC1D2BQ9UPU7 963 aa8.81□□□□□ -1
HMGN1-218ENST00000490032 ZNF330Q9Y3S2 320 aaPredicted RBP8.81□□□□□ -1
HMGN1-218ENST00000490032 SPINT1O43278 529 aa8.8□□□□□ -1
HMGN1-218ENST00000490032 GIGYF1O75420 1035 aaPredicted RBP8.8□□□□□ -1
HMGN1-218ENST00000490032 RAB15P59190 212 aa8.8□□□□□ -1
HMGN1-218ENST00000490032 LCE2CQ5TA81 110 aa8.8□□□□□ -1
HMGN1-218ENST00000490032 PRM3Q9NNZ6 103 aa8.8□□□□□ -1
HMGN1-218ENST00000490032 SOBPA7XYQ1 873 aa8.79□□□□□ -1
HMGN1-218ENST00000490032 MAN1A2O60476 641 aa8.78□□□□□ -1
HMGN1-218ENST00000490032 ADD1P35611 737 aaKnown RBP8.78□□□□□ -1
HMGN1-218ENST00000490032 IRF5Q13568 498 aa8.78□□□□□ -1
HMGN1-218ENST00000490032 MCM6Q14566 821 aa8.78□□□□□ -1
HMGN1-218ENST00000490032 TRIM52Q96A61 297 aa8.78□□□□□ -1
HMGN1-218ENST00000490032 DNMT3LQ9UJW3 386 aa8.78□□□□□ -1
HMGN1-218ENST00000490032 H3BM21 787 aa8.77□□□□□ -1.01
HMGN1-218ENST00000490032 ADH1AP07327 375 aa8.77□□□□□ -1.01
HMGN1-218ENST00000490032 RNF20Q5VTR2 975 aa8.77□□□□□ -1.01
HMGN1-218ENST00000490032 KDF1Q8NAX2 398 aaPredicted RBP8.77□□□□□ -1.01
HMGN1-218ENST00000490032 AGBL1Q96MI9 1066 aa8.77□□□□□ -1.01
HMGN1-218ENST00000490032 TTLL8A6PVC2 850 aa8.76□□□□□ -1.01
HMGN1-218ENST00000490032 WIPF1O43516 503 aa8.76□□□□□ -1.01
HMGN1-218ENST00000490032 SLC16A10Q8TF71 515 aa8.76□□□□□ -1.01
HMGN1-218ENST00000490032 RELBQ01201 579 aa8.75□□□□□ -1.01
HMGN1-218ENST00000490032 PTGIRP43119 386 aa8.74□□□□□ -1.01
HMGN1-218ENST00000490032 ERVK-9P63128 1117 aa8.74□□□□□ -1.01
HMGN1-218ENST00000490032 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.74□□□□□ -1.01
HMGN1-218ENST00000490032 CYLDQ9NQC7 956 aa8.74□□□□□ -1.01
HMGN1-218ENST00000490032 CTSOP43234 321 aaPredicted RBP8.73□□□□□ -1.01
HMGN1-218ENST00000490032 INSM2Q96T92 566 aaPredicted RBP8.73□□□□□ -1.01
HMGN1-218ENST00000490032 GDPD2Q9HCC8 539 aa8.73□□□□□ -1.01
HMGN1-218ENST00000490032 CEP126Q9P2H0 1117 aa8.73□□□□□ -1.01
HMGN1-218ENST00000490032 VEGFBP49765 207 aa8.72□□□□□ -1.01
HMGN1-218ENST00000490032 CC2D2BQ6DHV5 1058 aa8.72□□□□□ -1.01
HMGN1-218ENST00000490032 IRF7Q92985 503 aa8.72□□□□□ -1.01
HMGN1-218ENST00000490032 ZNF395Q9H8N7 513 aaPredicted RBP8.72□□□□□ -1.01
HMGN1-218ENST00000490032 EIF4G2P78344 907 aaKnown RBP eCLIP8.71□□□□□ -1.021e-6■□□□□ 9.4
HMGN1-218ENST00000490032 FIGNL2A6NMB9 653 aa8.7□□□□□ -1.02
HMGN1-218ENST00000490032 PPFIA3O75145 1194 aa8.7□□□□□ -1.02
HMGN1-218ENST00000490032 VSIG8P0DPA2 414 aa8.7□□□□□ -1.02
HMGN1-218ENST00000490032 ABL2P42684 1182 aa8.7□□□□□ -1.02
HMGN1-218ENST00000490032 WASHC4Q2M389 1173 aa8.7□□□□□ -1.02
HMGN1-218ENST00000490032 RNF217Q8TC41 542 aa8.7□□□□□ -1.02
HMGN1-218ENST00000490032 PCDHB11Q9Y5F2 797 aa8.7□□□□□ -1.02
HMGN1-218ENST00000490032 ERBB4Q15303 1308 aa8.7□□□□□ -1.02
HMGN1-218ENST00000490032 ATP5J2-PTCD1G3V325 749 aa8.69□□□□□ -1.02
HMGN1-218ENST00000490032 TRAK2O60296 914 aa8.69□□□□□ -1.02
HMGN1-218ENST00000490032 SCTRP47872 440 aa8.69□□□□□ -1.02
HMGN1-218ENST00000490032 PTSQ03393 145 aa8.69□□□□□ -1.02
HMGN1-218ENST00000490032 TMEM132AQ24JP5 1023 aa8.69□□□□□ -1.02
HMGN1-218ENST00000490032 FOXD4L5Q5VV16 416 aaPredicted RBP8.69□□□□□ -1.02
HMGN1-218ENST00000490032 PHTF2Q8N3S3 785 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms