RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 AMPHP49418 695 aa14.82□□□□□ -0.04
VPS13D-210ENST00000489961 CC2D1BQ5T0F9 858 aaKnown RBP14.82□□□□□ -0.04
VPS13D-210ENST00000489961 MAP3K19Q56UN5 1328 aa14.82□□□□□ -0.04
VPS13D-210ENST00000489961 MAP2P11137 1827 aaKnown RBP14.82□□□□□ -0.04
VPS13D-210ENST00000489961 ATRNO75882 1429 aa14.82□□□□□ -0.04
VPS13D-210ENST00000489961 FBLN1P23142 703 aa14.81□□□□□ -0.04
VPS13D-210ENST00000489961 TNNT2P45379 298 aaPredicted RBP14.81□□□□□ -0.04
VPS13D-210ENST00000489961 RRS1Q15050 365 aaKnown RBP14.81□□□□□ -0.04
VPS13D-210ENST00000489961 POTEAQ6S8J7 498 aa14.81□□□□□ -0.04
VPS13D-210ENST00000489961 STRN4Q9NRL3 753 aa14.81□□□□□ -0.04
VPS13D-210ENST00000489961 RTL1A6NKG5 1358 aa14.81□□□□□ -0.04
VPS13D-210ENST00000489961 VPS72Q15906 364 aa14.8□□□□□ -0.04
VPS13D-210ENST00000489961 IP6K1Q92551 441 aa14.8□□□□□ -0.04
VPS13D-210ENST00000489961 CCDC9Q9Y3X0 531 aaKnown RBP14.8□□□□□ -0.04
VPS13D-210ENST00000489961 KIF24Q5T7B8 1368 aa14.8□□□□□ -0.04
VPS13D-210ENST00000489961 BLMP54132 1417 aaPredicted RBP14.8□□□□□ -0.04
VPS13D-210ENST00000489961 COL5A2P05997 1499 aaPredicted RBP14.8□□□□□ -0.04
VPS13D-210ENST00000489961 CNGB1Q14028 1251 aaPredicted RBP14.79□□□□□ -0.04
VPS13D-210ENST00000489961 AXIN2Q9Y2T1 843 aa14.79□□□□□ -0.04
VPS13D-210ENST00000489961 RXRBP28702 533 aa14.78□□□□□ -0.04
VPS13D-210ENST00000489961 HOXC9P31274 260 aa14.78□□□□□ -0.04
VPS13D-210ENST00000489961 RBM6P78332 1123 aaKnown RBP14.78□□□□□ -0.04
VPS13D-210ENST00000489961 GJD4Q96KN9 370 aaPredicted RBP14.78□□□□□ -0.04
VPS13D-210ENST00000489961 FLT4P35916 1363 aa14.77□□□□□ -0.04
VPS13D-210ENST00000489961 PPM1GO15355 546 aaPredicted RBP14.77□□□□□ -0.05
VPS13D-210ENST00000489961 CSB-PGBD3P0DP91 1061 aa14.77□□□□□ -0.05
VPS13D-210ENST00000489961 EMILIN1Q9Y6C2 1016 aa14.77□□□□□ -0.05
VPS13D-210ENST00000489961 PEAK1Q9H792 1746 aa14.77□□□□□ -0.05
VPS13D-210ENST00000489961 SPATA31A5Q5VU36 1347 aa14.76□□□□□ -0.05
VPS13D-210ENST00000489961 SPATA31A7Q8IWB4 1347 aa14.76□□□□□ -0.05
VPS13D-210ENST00000489961 WDR17Q8IZU2 1322 aa14.76□□□□□ -0.05
VPS13D-210ENST00000489961 LARP1Q6PKG0 1096 aaKnown RBP14.76□□□□□ -0.05
VPS13D-210ENST00000489961 POLKQ9UBT6 870 aa14.76□□□□□ -0.05
VPS13D-210ENST00000489961 FAM208AQ9UK61 1670 aaKnown RBP14.76□□□□□ -0.05
VPS13D-210ENST00000489961 GLI3P10071 1580 aa14.76□□□□□ -0.05
VPS13D-210ENST00000489961 CRB1P82279 1406 aa14.75□□□□□ -0.05
VPS13D-210ENST00000489961 ERBB3P21860 1342 aa14.75□□□□□ -0.05
VPS13D-210ENST00000489961 TOM1L2Q6ZVM7 507 aa14.75□□□□□ -0.05
VPS13D-210ENST00000489961 ANKRD24Q8TF21 1146 aa14.75□□□□□ -0.05
VPS13D-210ENST00000489961 SMG6Q86US8 1419 aaKnown RBP14.75□□□□□ -0.05
VPS13D-210ENST00000489961 INSRP06213 1382 aa14.74□□□□□ -0.05
VPS13D-210ENST00000489961 SPATA31A1Q5TZJ5 1347 aa14.74□□□□□ -0.05
VPS13D-210ENST00000489961 LTV1Q96GA3 475 aaPredicted RBP14.74□□□□□ -0.05
VPS13D-210ENST00000489961 HSP90AB2PQ58FF8 381 aa14.73□□□□□ -0.05
VPS13D-210ENST00000489961 USP35Q9P2H5 1018 aa14.73□□□□□ -0.05
VPS13D-210ENST00000489961 CDK12Q9NYV4 1490 aaPredicted RBP14.73□□□□□ -0.05
VPS13D-210ENST00000489961 NLRP2Q9NX02 1062 aa14.72□□□□□ -0.05
VPS13D-210ENST00000489961 THRAP3Q9Y2W1 955 aaKnown RBP14.72□□□□□ -0.05
VPS13D-210ENST00000489961 TCP11L2Q8N4U5 519 aa14.71□□□□□ -0.05
VPS13D-210ENST00000489961 CARD10Q9BWT7 1032 aa14.71□□□□□ -0.05
VPS13D-210ENST00000489961 A0A0G2JS52 829 aa14.7□□□□□ -0.06
VPS13D-210ENST00000489961 MTHFSP49914 203 aa14.7□□□□□ -0.06
VPS13D-210ENST00000489961 MYT1Q01538 1121 aa14.7□□□□□ -0.06
VPS13D-210ENST00000489961 FAM98CQ17RN3 349 aaKnown RBP14.7□□□□□ -0.06
VPS13D-210ENST00000489961 BARGINQ6ZT62 677 aa14.7□□□□□ -0.06
VPS13D-210ENST00000489961 PARD3Q8TEW0 1356 aa14.7□□□□□ -0.06
VPS13D-210ENST00000489961 RGPD2P0DJD1 1756 aa14.7□□□□□ -0.06
VPS13D-210ENST00000489961 WNK3Q9BYP7 1800 aa14.69□□□□□ -0.06
VPS13D-210ENST00000489961 RGS12O14924 1447 aa14.69□□□□□ -0.06
VPS13D-210ENST00000489961 RALBP1Q15311 655 aa14.69□□□□□ -0.06
VPS13D-210ENST00000489961 ONECUT3O60422 494 aaPredicted RBP14.68□□□□□ -0.06
VPS13D-210ENST00000489961 PPP2R1AP30153 589 aa14.68□□□□□ -0.06
VPS13D-210ENST00000489961 THSD7AQ9UPZ6 1657 aa14.68□□□□□ -0.06
VPS13D-210ENST00000489961 SEPT12Q8IYM1 358 aa14.67□□□□□ -0.06
VPS13D-210ENST00000489961 CDCA7Q9BWT1 371 aaPredicted RBP14.67□□□□□ -0.06
VPS13D-210ENST00000489961 EIF4A2Q14240 407 aaKnown RBP14.66□□□□□ -0.06
VPS13D-210ENST00000489961 NBPF6Q5VWK0 638 aa14.66□□□□□ -0.06
VPS13D-210ENST00000489961 ILDR2Q71H61 639 aa14.66□□□□□ -0.06
VPS13D-210ENST00000489961 NBPF4Q96M43 638 aa14.66□□□□□ -0.06
VPS13D-210ENST00000489961 CFAP53Q96M91 514 aa14.66□□□□□ -0.06
VPS13D-210ENST00000489961 PARP4Q9UKK3 1724 aaKnown RBP14.66□□□□□ -0.06
VPS13D-210ENST00000489961 BRWD3Q6RI45 1802 aa14.65□□□□□ -0.06
VPS13D-210ENST00000489961 IL2RBP14784 551 aa14.64□□□□□ -0.07
VPS13D-210ENST00000489961 DISP2A7MBM2 1401 aa14.64□□□□□ -0.07
VPS13D-210ENST00000489961 DIAPH1O60610 1272 aaKnown RBP14.63□□□□□ -0.07
VPS13D-210ENST00000489961 USHBP1Q8N6Y0 703 aa14.63□□□□□ -0.07
VPS13D-210ENST00000489961 EYA1Q99502 592 aa14.63□□□□□ -0.07
VPS13D-210ENST00000489961 PRKRIP1Q9H875 184 aaPredicted RBP14.63□□□□□ -0.07
VPS13D-210ENST00000489961 MYBBP1AQ9BQG0 1328 aaKnown RBP14.63□□□□□ -0.07
VPS13D-210ENST00000489961 LRRC37A3O60309 1634 aa14.63□□□□□ -0.07
VPS13D-210ENST00000489961 IL13P35225 146 aa14.62□□□□□ -0.07
VPS13D-210ENST00000489961 RAPGEF4Q8WZA2 1011 aa14.62□□□□□ -0.07
VPS13D-210ENST00000489961 COL3A1P02461 1466 aaPredicted RBP14.62□□□□□ -0.07
VPS13D-210ENST00000489961 IGSF1Q8N6C5 1336 aa14.62□□□□□ -0.07
VPS13D-210ENST00000489961 RGPD1P0DJD0 1748 aa14.61□□□□□ -0.07
VPS13D-210ENST00000489961 NCAPD2Q15021 1401 aa14.61□□□□□ -0.07
VPS13D-210ENST00000489961 ANP32CO43423 234 aa14.61□□□□□ -0.07
VPS13D-210ENST00000489961 PDE3BQ13370 1112 aa14.61□□□□□ -0.07
VPS13D-210ENST00000489961 DDB1Q16531 1140 aa14.61□□□□□ -0.07
VPS13D-210ENST00000489961 KRT27Q7Z3Y8 459 aa14.61□□□□□ -0.07
VPS13D-210ENST00000489961 EXOC5O00471 708 aa14.6□□□□□ -0.07
VPS13D-210ENST00000489961 TATP17735 454 aaPredicted RBP14.6□□□□□ -0.07
VPS13D-210ENST00000489961 NUDCQ9Y266 331 aa14.6□□□□□ -0.07
VPS13D-210ENST00000489961 MEGF6O75095 1541 aa14.59□□□□□ -0.07
VPS13D-210ENST00000489961 TNS2Q63HR2 1409 aa14.58□□□□□ -0.07
VPS13D-210ENST00000489961 U2SURPO15042 1029 aaKnown RBP14.58□□□□□ -0.08
VPS13D-210ENST00000489961 OVOS2A0A0G2JMS6 1433 aa14.58□□□□□ -0.08
VPS13D-210ENST00000489961 SULT6B1Q6IMI4 303 aa14.57□□□□□ -0.08
VPS13D-210ENST00000489961 ZCRB1Q8TBF4 217 aaKnown RBP14.56□□□□□ -0.08
VPS13D-210ENST00000489961 KDRP35968 1356 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms