RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 OVOS2Q6IE36 1432 aa17.75■□□□□ 0.43
CPSF3-204ENST00000489403 TOM1L2Q6ZVM7 507 aa17.74■□□□□ 0.43
CPSF3-204ENST00000489403 WDR17Q8IZU2 1322 aa17.73■□□□□ 0.43
CPSF3-204ENST00000489403 TTC21AQ8NDW8 1320 aa17.73■□□□□ 0.43
CPSF3-204ENST00000489403 NFAT5O94916 1531 aa17.73■□□□□ 0.43
CPSF3-204ENST00000489403 ARHGEF25Q86VW2 580 aa17.73■□□□□ 0.43
CPSF3-204ENST00000489403 KCNH5Q8NCM2 988 aa17.73■□□□□ 0.43
CPSF3-204ENST00000489403 RGPD3A6NKT7 1758 aaPredicted RBP17.73■□□□□ 0.43
CPSF3-204ENST00000489403 RGPD4Q7Z3J3 1758 aa17.73■□□□□ 0.43
CPSF3-204ENST00000489403 KTN1Q86UP2 1357 aaKnown RBP17.72■□□□□ 0.43
CPSF3-204ENST00000489403 SBNO2Q9Y2G9 1366 aa17.72■□□□□ 0.43
CPSF3-204ENST00000489403 C11orf95C9JLR9 678 aaPredicted RBP17.72■□□□□ 0.43
CPSF3-204ENST00000489403 SOX12O15370 315 aa17.72■□□□□ 0.43
CPSF3-204ENST00000489403 DDB1Q16531 1140 aa17.71■□□□□ 0.43
CPSF3-204ENST00000489403 USP54Q70EL1 1684 aa17.7■□□□□ 0.42
CPSF3-204ENST00000489403 CD163L1Q9NR16 1453 aa17.69■□□□□ 0.42
CPSF3-204ENST00000489403 ABCC6O95255 1503 aa17.69■□□□□ 0.42
CPSF3-204ENST00000489403 NBPF14Q5TI25 921 aa17.69■□□□□ 0.42
CPSF3-204ENST00000489403 MARCH10Q8NA82 808 aaPredicted RBP17.67■□□□□ 0.42
CPSF3-204ENST00000489403 CARD10Q9BWT7 1032 aa17.67■□□□□ 0.42
CPSF3-204ENST00000489403 CARD11Q9BXL7 1154 aa17.67■□□□□ 0.42
CPSF3-204ENST00000489403 USP31Q70CQ4 1352 aa17.66■□□□□ 0.42
CPSF3-204ENST00000489403 BCL9O00512 1426 aa17.66■□□□□ 0.42
CPSF3-204ENST00000489403 PLSCR1O15162 318 aa17.66■□□□□ 0.42
CPSF3-204ENST00000489403 CSB-PGBD3P0DP91 1061 aa17.66■□□□□ 0.42
CPSF3-204ENST00000489403 PTF1AQ7RTS3 328 aa17.66■□□□□ 0.42
CPSF3-204ENST00000489403 CDCA7Q9BWT1 371 aaPredicted RBP17.66■□□□□ 0.42
CPSF3-204ENST00000489403 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.65■□□□□ 0.42
CPSF3-204ENST00000489403 LTN1O94822 1766 aa17.65■□□□□ 0.42
CPSF3-204ENST00000489403 BCL11BQ9C0K0 894 aaPredicted RBP17.64■□□□□ 0.41
CPSF3-204ENST00000489403 CCDC7Q96M83 1385 aa17.64■□□□□ 0.41
CPSF3-204ENST00000489403 NME9Q86XW9 330 aa17.63■□□□□ 0.41
CPSF3-204ENST00000489403 TNS2Q63HR2 1409 aa17.63■□□□□ 0.41
CPSF3-204ENST00000489403 TMC1Q8TDI8 760 aa17.62■□□□□ 0.41
CPSF3-204ENST00000489403 ANO8Q9HCE9 1232 aaPredicted RBP17.62■□□□□ 0.41
CPSF3-204ENST00000489403 TONSLQ96HA7 1378 aa17.62■□□□□ 0.41
CPSF3-204ENST00000489403 CASZ1Q86V15 1759 aa17.61■□□□□ 0.41
CPSF3-204ENST00000489403 SLC12A5Q9H2X9 1139 aa17.61■□□□□ 0.41
CPSF3-204ENST00000489403 ERBB3P21860 1342 aa17.61■□□□□ 0.41
CPSF3-204ENST00000489403 EDC4Q6P2E9 1401 aaKnown RBP17.61■□□□□ 0.41
CPSF3-204ENST00000489403 EXOC5O00471 708 aa17.6■□□□□ 0.41
CPSF3-204ENST00000489403 HDGFL2Q7Z4V5 671 aaPredicted RBP17.6■□□□□ 0.41
CPSF3-204ENST00000489403 A0A1W2PP64 1363 aa17.6■□□□□ 0.41
CPSF3-204ENST00000489403 NHSQ6T4R5 1651 aa17.59■□□□□ 0.41
CPSF3-204ENST00000489403 KCNQ2O43526 872 aa17.59■□□□□ 0.41
CPSF3-204ENST00000489403 PROM2Q8N271 834 aa17.59■□□□□ 0.41
CPSF3-204ENST00000489403 SPON1Q9HCB6 807 aa17.59■□□□□ 0.41
CPSF3-204ENST00000489403 PUS7Q96PZ0 661 aaKnown RBP17.56■□□□□ 0.4
CPSF3-204ENST00000489403 NLRP2Q9NX02 1062 aa17.56■□□□□ 0.4
CPSF3-204ENST00000489403 ANKRD24Q8TF21 1146 aa17.55■□□□□ 0.4
CPSF3-204ENST00000489403 TERF2IPQ9NYB0 399 aa17.55■□□□□ 0.4
CPSF3-204ENST00000489403 PPP1R1BQ9UD71 204 aaPredicted RBP17.55■□□□□ 0.4
CPSF3-204ENST00000489403 IL2RBP14784 551 aa17.54■□□□□ 0.4
CPSF3-204ENST00000489403 TXNRD1Q16881 649 aa17.54■□□□□ 0.4
CPSF3-204ENST00000489403 TESK2Q96S53 571 aa17.54■□□□□ 0.4
CPSF3-204ENST00000489403 PDGFDQ9GZP0 370 aaPredicted RBP17.54■□□□□ 0.4
CPSF3-204ENST00000489403 NINLQ9Y2I6 1382 aa17.53■□□□□ 0.4
CPSF3-204ENST00000489403 ACSBG1Q96GR2 724 aa17.53■□□□□ 0.4
CPSF3-204ENST00000489403 FAM208AQ9UK61 1670 aaKnown RBP17.52■□□□□ 0.4
CPSF3-204ENST00000489403 BTAF1O14981 1849 aa17.52■□□□□ 0.4
CPSF3-204ENST00000489403 ST20-MTHFSA0A0A6YYL1 179 aa17.52■□□□□ 0.4
CPSF3-204ENST00000489403 MYOM1P52179 1685 aa17.51■□□□□ 0.39
CPSF3-204ENST00000489403 PAPPAQ13219 1627 aa17.5■□□□□ 0.39
CPSF3-204ENST00000489403 SLC15A2Q16348 729 aa17.5■□□□□ 0.39
CPSF3-204ENST00000489403 STK32BQ9NY57 414 aa17.5■□□□□ 0.39
CPSF3-204ENST00000489403 ZBTB7AO95365 584 aa17.49■□□□□ 0.39
CPSF3-204ENST00000489403 IP6K1Q92551 441 aa17.49■□□□□ 0.39
CPSF3-204ENST00000489403 PTGER2P43116 358 aa17.47■□□□□ 0.39
CPSF3-204ENST00000489403 ANKRD36BQ8N2N9 1353 aa17.47■□□□□ 0.39
CPSF3-204ENST00000489403 MAP3K19Q56UN5 1328 aa17.47■□□□□ 0.39
CPSF3-204ENST00000489403 RGPD2P0DJD1 1756 aa17.46■□□□□ 0.39
CPSF3-204ENST00000489403 LTV1Q96GA3 475 aaPredicted RBP17.46■□□□□ 0.39
CPSF3-204ENST00000489403 COG3Q96JB2 828 aa17.46■□□□□ 0.39
CPSF3-204ENST00000489403 SHANK3Q9BYB0 1731 aa17.45■□□□□ 0.38
CPSF3-204ENST00000489403 SLC24A1O60721 1099 aa17.45■□□□□ 0.38
CPSF3-204ENST00000489403 FBLN1P23142 703 aa17.45■□□□□ 0.38
CPSF3-204ENST00000489403 YY1P25490 414 aa17.45■□□□□ 0.38
CPSF3-204ENST00000489403 ATF5Q9Y2D1 282 aaPredicted RBP17.45■□□□□ 0.38
CPSF3-204ENST00000489403 KAT6BQ8WYB5 2073 aa17.44■□□□□ 0.38
CPSF3-204ENST00000489403 HOXC9P31274 260 aa17.44■□□□□ 0.38
CPSF3-204ENST00000489403 DOT1LQ8TEK3 1739 aa17.44■□□□□ 0.38
CPSF3-204ENST00000489403 AMPHP49418 695 aa17.42■□□□□ 0.38
CPSF3-204ENST00000489403 DDX54Q8TDD1 881 aaKnown RBP17.42■□□□□ 0.38
CPSF3-204ENST00000489403 SGIP1Q9BQI5 828 aa17.42■□□□□ 0.38
CPSF3-204ENST00000489403 MTFR1LQ9H019 292 aa17.42■□□□□ 0.38
CPSF3-204ENST00000489403 LRRC4BQ9NT99 713 aa17.42■□□□□ 0.38
CPSF3-204ENST00000489403 RTL1A6NKG5 1358 aa17.41■□□□□ 0.38
CPSF3-204ENST00000489403 USP47Q96K76 1375 aa17.41■□□□□ 0.38
CPSF3-204ENST00000489403 DCAF8L1A6NGE4 600 aa17.41■□□□□ 0.38
CPSF3-204ENST00000489403 ZNF827Q17R98 1081 aa17.41■□□□□ 0.38
CPSF3-204ENST00000489403 MEGF6O75095 1541 aa17.41■□□□□ 0.38
CPSF3-204ENST00000489403 TMF1P82094 1093 aa17.4■□□□□ 0.38
CPSF3-204ENST00000489403 QSER1Q2KHR3 1735 aa17.4■□□□□ 0.38
CPSF3-204ENST00000489403 KIF20BQ96Q89 1820 aa17.4■□□□□ 0.38
CPSF3-204ENST00000489403 RRS1Q15050 365 aaKnown RBP17.39■□□□□ 0.37
CPSF3-204ENST00000489403 FHDC1Q9C0D6 1143 aaPredicted RBP17.39■□□□□ 0.37
CPSF3-204ENST00000489403 TUBGCP6Q96RT7 1819 aa17.38■□□□□ 0.37
CPSF3-204ENST00000489403 FYB1O15117 783 aa17.38■□□□□ 0.37
CPSF3-204ENST00000489403 GGNBP2Q9H3C7 697 aa17.38■□□□□ 0.37
CPSF3-204ENST00000489403 NSD2O96028 1365 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 1200.9 ms