RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CCP110O43303 1012 aa20.92■□□□□ 0.94
NPHP4-209ENST00000489180 CWC27Q6UX04 472 aaKnown RBP20.92■□□□□ 0.94
NPHP4-209ENST00000489180 SRCIN1Q9C0H9 1055 aa20.92■□□□□ 0.94
NPHP4-209ENST00000489180 KRT85P78386 507 aa20.91■□□□□ 0.94
NPHP4-209ENST00000489180 CCDC158Q5M9N0 1113 aa20.91■□□□□ 0.94
NPHP4-209ENST00000489180 CNNM1Q9NRU3 951 aa20.91■□□□□ 0.94
NPHP4-209ENST00000489180 KIF6Q6ZMV9 814 aa20.91■□□□□ 0.94
NPHP4-209ENST00000489180 MYL6BP14649 208 aa20.9■□□□□ 0.94
NPHP4-209ENST00000489180 AXDND1Q5T1B0 1012 aaPredicted RBP20.9■□□□□ 0.94
NPHP4-209ENST00000489180 CCDC112Q8NEF3 446 aa20.9■□□□□ 0.94
NPHP4-209ENST00000489180 CDK5RAP3Q96JB5 506 aa20.9■□□□□ 0.94
NPHP4-209ENST00000489180 PDRG1Q9NUG6 133 aa20.9■□□□□ 0.94
NPHP4-209ENST00000489180 TMEM57Q8N5G2 664 aa20.9■□□□□ 0.94
NPHP4-209ENST00000489180 AACSQ86V21 672 aa20.9■□□□□ 0.94
NPHP4-209ENST00000489180 JAKMIP1Q96N16 626 aaKnown RBP20.9■□□□□ 0.94
NPHP4-209ENST00000489180 RRS1Q15050 365 aaKnown RBP20.9■□□□□ 0.94
NPHP4-209ENST00000489180 OSCARQ8IYS5 282 aa20.9■□□□□ 0.94
NPHP4-209ENST00000489180 C9orf84Q5VXU9 1444 aa20.89■□□□□ 0.94
NPHP4-209ENST00000489180 C20orf194Q5TEA3 1177 aa20.89■□□□□ 0.93
NPHP4-209ENST00000489180 CCDC66A2RUB6 948 aa20.89■□□□□ 0.93
NPHP4-209ENST00000489180 HFM1A2PYH4 1435 aa20.89■□□□□ 0.93
NPHP4-209ENST00000489180 SLFN5Q08AF3 891 aa20.89■□□□□ 0.93
NPHP4-209ENST00000489180 ANKRD1Q15327 319 aa20.89■□□□□ 0.93
NPHP4-209ENST00000489180 SPATA32Q96LK8 384 aa20.89■□□□□ 0.93
NPHP4-209ENST00000489180 ESPNB1AK53 854 aa20.88■□□□□ 0.93
NPHP4-209ENST00000489180 TXLNAP40222 546 aa20.88■□□□□ 0.93
NPHP4-209ENST00000489180 SRGAP3O43295 1099 aa20.88■□□□□ 0.93
NPHP4-209ENST00000489180 GPRASP1Q5JY77 1395 aa20.88■□□□□ 0.93
NPHP4-209ENST00000489180 CT47B1P0C2W7 299 aaPredicted RBP20.87■□□□□ 0.93
NPHP4-209ENST00000489180 SYCE3A1L190 88 aa20.87■□□□□ 0.93
NPHP4-209ENST00000489180 MEX3CQ5U5Q3 659 aaKnown RBP20.87■□□□□ 0.93
NPHP4-209ENST00000489180 NUTM1Q86Y26 1132 aa20.86■□□□□ 0.93
NPHP4-209ENST00000489180 LEKR1Q6ZMV7 388 aa20.86■□□□□ 0.93
NPHP4-209ENST00000489180 JMYQ8N9B5 988 aa20.86■□□□□ 0.93
NPHP4-209ENST00000489180 BLOC1S2Q6QNY1 142 aa20.86■□□□□ 0.93
NPHP4-209ENST00000489180 PPFIBP1Q86W92 1011 aa20.86■□□□□ 0.93
NPHP4-209ENST00000489180 NUP133Q8WUM0 1156 aa20.85■□□□□ 0.93
NPHP4-209ENST00000489180 ERICH3Q5RHP9 1530 aa20.85■□□□□ 0.93
NPHP4-209ENST00000489180 KRT18P05783 430 aaKnown RBP20.85■□□□□ 0.93
NPHP4-209ENST00000489180 FKBP4Q02790 459 aaKnown RBP eCLIP20.85■□□□□ 0.93
NPHP4-209ENST00000489180 ZNF530Q6P9A1 599 aaPredicted RBP20.84■□□□□ 0.93
NPHP4-209ENST00000489180 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.84■□□□□ 0.93
NPHP4-209ENST00000489180 NUP62CLQ9H1M0 184 aa20.84■□□□□ 0.93
NPHP4-209ENST00000489180 SYNJ1O43426 1573 aa20.84■□□□□ 0.93
NPHP4-209ENST00000489180 CAMK4Q16566 473 aa20.84■□□□□ 0.93
NPHP4-209ENST00000489180 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.84■□□□□ 0.932e-6■■■■■ 148.9
NPHP4-209ENST00000489180 SMARCA5O60264 1052 aaPredicted RBP20.84■□□□□ 0.93
NPHP4-209ENST00000489180 TSPYL1Q9H0U9 437 aa20.84■□□□□ 0.93
NPHP4-209ENST00000489180 STRN4Q9NRL3 753 aa20.84■□□□□ 0.93
NPHP4-209ENST00000489180 FILIP1Q7Z7B0 1213 aa20.84■□□□□ 0.93
NPHP4-209ENST00000489180 MIS18AQ9NYP9 233 aa20.84■□□□□ 0.93
NPHP4-209ENST00000489180 CCDC69A6NI79 296 aa20.83■□□□□ 0.93
NPHP4-209ENST00000489180 THUMPD2Q9BTF0 503 aaKnown RBP20.83■□□□□ 0.93
NPHP4-209ENST00000489180 CIZ1Q9ULV3 898 aaPredicted RBP20.83■□□□□ 0.93
NPHP4-209ENST00000489180 DCTN1Q14203 1278 aa20.83■□□□□ 0.93
NPHP4-209ENST00000489180 EXOC6BQ9Y2D4 811 aa20.83■□□□□ 0.93
NPHP4-209ENST00000489180 CCAR1Q8IX12 1150 aaKnown RBP20.83■□□□□ 0.92
NPHP4-209ENST00000489180 EHBP1L1Q8N3D4 1523 aa20.83■□□□□ 0.92
NPHP4-209ENST00000489180 SLC3A2P08195 630 aaKnown RBP20.83■□□□□ 0.92
NPHP4-209ENST00000489180 PRG4Q92954 1404 aaPredicted RBP20.83■□□□□ 0.92
NPHP4-209ENST00000489180 KLHL34Q8N239 644 aa20.82■□□□□ 0.92
NPHP4-209ENST00000489180 PKNOX2Q96KN3 472 aa20.82■□□□□ 0.92
NPHP4-209ENST00000489180 ZNHIT6Q9NWK9 470 aaKnown RBP20.82■□□□□ 0.92
NPHP4-209ENST00000489180 CASTP20810 708 aaKnown RBP20.82■□□□□ 0.92
NPHP4-209ENST00000489180 TRIM22Q8IYM9 498 aa20.82■□□□□ 0.92
NPHP4-209ENST00000489180 DDX11Q96FC9 970 aa20.82■□□□□ 0.92
NPHP4-209ENST00000489180 TATP17735 454 aaPredicted RBP20.81■□□□□ 0.92
NPHP4-209ENST00000489180 CABP4P57796 275 aa20.81■□□□□ 0.92
NPHP4-209ENST00000489180 TMPOP42166 694 aaKnown RBP20.8■□□□□ 0.92
NPHP4-209ENST00000489180 PIP4K2AP48426 406 aaPredicted RBP20.8■□□□□ 0.92
NPHP4-209ENST00000489180 SPINK5Q9NQ38 1064 aaPredicted RBP20.8■□□□□ 0.92
NPHP4-209ENST00000489180 ATP2B2Q01814 1243 aa20.8■□□□□ 0.92
NPHP4-209ENST00000489180 FERMT3Q86UX7 667 aa20.8■□□□□ 0.92
NPHP4-209ENST00000489180 ZHX3Q9H4I2 956 aa20.8■□□□□ 0.92
NPHP4-209ENST00000489180 NSD3Q9BZ95 1437 aa20.8■□□□□ 0.92
NPHP4-209ENST00000489180 TANGO6Q9C0B7 1094 aa20.79■□□□□ 0.92
NPHP4-209ENST00000489180 DEF6Q9H4E7 631 aa20.79■□□□□ 0.92
NPHP4-209ENST00000489180 MYO6Q9UM54 1294 aa20.79■□□□□ 0.92
NPHP4-209ENST00000489180 RDXP35241 583 aaKnown RBP20.79■□□□□ 0.92
NPHP4-209ENST00000489180 SYNJ2O15056 1496 aa20.79■□□□□ 0.92
NPHP4-209ENST00000489180 DACH1Q9UI36 760 aa20.79■□□□□ 0.92
NPHP4-209ENST00000489180 C11orf95C9JLR9 678 aaPredicted RBP20.79■□□□□ 0.92
NPHP4-209ENST00000489180 CNKSR2Q8WXI2 1034 aa20.79■□□□□ 0.92
NPHP4-209ENST00000489180 CCDC191Q8NCU4 936 aa20.79■□□□□ 0.92
NPHP4-209ENST00000489180 ZSCAN31Q96LW9 406 aaPredicted RBP20.79■□□□□ 0.92
NPHP4-209ENST00000489180 DDX54Q8TDD1 881 aaKnown RBP20.78■□□□□ 0.92
NPHP4-209ENST00000489180 FAM193AP78312 1265 aa20.78■□□□□ 0.92
NPHP4-209ENST00000489180 UPF3BQ9BZI7 483 aaKnown RBP20.78■□□□□ 0.92
NPHP4-209ENST00000489180 DAPK1P53355 1430 aa20.78■□□□□ 0.92
NPHP4-209ENST00000489180 CEP57L1Q8IYX8 460 aa20.78■□□□□ 0.92
NPHP4-209ENST00000489180 CCDC83Q8IWF9 413 aa20.78■□□□□ 0.92
NPHP4-209ENST00000489180 RTEL1-TNFRSF6BF6WH68 1400 aa20.78■□□□□ 0.92
NPHP4-209ENST00000489180 CCDC181Q5TID7 509 aa20.77■□□□□ 0.92
NPHP4-209ENST00000489180 RPAP2Q8IXW5 612 aaPredicted RBP20.77■□□□□ 0.92
NPHP4-209ENST00000489180 NACAP1Q9BZK3 213 aa20.77■□□□□ 0.92
NPHP4-209ENST00000489180 TIAM1Q13009 1591 aa20.77■□□□□ 0.92
NPHP4-209ENST00000489180 ZNF692Q9BU19 519 aaPredicted RBP20.77■□□□□ 0.92
NPHP4-209ENST00000489180 BTBD11A6QL63 1104 aa20.77■□□□□ 0.91
NPHP4-209ENST00000489180 CBFA2T2O43439 604 aa20.77■□□□□ 0.91
NPHP4-209ENST00000489180 CFAP45Q9UL16 551 aa20.77■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms