RNA–Protein interactions for RNA: ENST00000488920.2

CCHCR1-215, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 715 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-215ENST00000488920 USP31Q70CQ4 1352 aa16.78■□□□□ 0.28
CCHCR1-215ENST00000488920 WDR17Q8IZU2 1322 aa16.78■□□□□ 0.28
CCHCR1-215ENST00000488920 SLC24A1O60721 1099 aa16.78■□□□□ 0.28
CCHCR1-215ENST00000488920 A0A1W2PP64 1363 aa16.77■□□□□ 0.28
CCHCR1-215ENST00000488920 APBA3O96018 575 aa16.77■□□□□ 0.28
CCHCR1-215ENST00000488920 EZH2Q15910 746 aaKnown RBP16.76■□□□□ 0.27
CCHCR1-215ENST00000488920 EDC4Q6P2E9 1401 aaKnown RBP16.76■□□□□ 0.27
CCHCR1-215ENST00000488920 USP47Q96K76 1375 aa16.76■□□□□ 0.27
CCHCR1-215ENST00000488920 PSDA5PKW4 1024 aaPredicted RBP16.75■□□□□ 0.27
CCHCR1-215ENST00000488920 DDB1Q16531 1140 aa16.75■□□□□ 0.27
CCHCR1-215ENST00000488920 CARD10Q9BWT7 1032 aa16.75■□□□□ 0.27
CCHCR1-215ENST00000488920 NFAT5O94916 1531 aa16.75■□□□□ 0.27
CCHCR1-215ENST00000488920 COL18A1P39060 1754 aa16.74■□□□□ 0.27
CCHCR1-215ENST00000488920 TMF1P82094 1093 aa16.74■□□□□ 0.27
CCHCR1-215ENST00000488920 CAMKK2Q96RR4 588 aa16.74■□□□□ 0.27
CCHCR1-215ENST00000488920 TIMELESSQ9UNS1 1208 aa16.74■□□□□ 0.27
CCHCR1-215ENST00000488920 MON2Q7Z3U7 1717 aa16.73■□□□□ 0.27
CCHCR1-215ENST00000488920 CDCA7Q9BWT1 371 aaPredicted RBP16.72■□□□□ 0.27
CCHCR1-215ENST00000488920 NINLQ9Y2I6 1382 aa16.72■□□□□ 0.27
CCHCR1-215ENST00000488920 CLSPNQ9HAW4 1339 aa16.71■□□□□ 0.27
CCHCR1-215ENST00000488920 DISP2A7MBM2 1401 aa16.71■□□□□ 0.27
CCHCR1-215ENST00000488920 NLRP2Q9NX02 1062 aa16.71■□□□□ 0.27
CCHCR1-215ENST00000488920 RGPD1P0DJD0 1748 aa16.7■□□□□ 0.26
CCHCR1-215ENST00000488920 R3HDM1Q15032 1099 aaKnown RBP16.7■□□□□ 0.26
CCHCR1-215ENST00000488920 MARCH10Q8NA82 808 aaPredicted RBP16.7■□□□□ 0.26
CCHCR1-215ENST00000488920 COG3Q96JB2 828 aa16.7■□□□□ 0.26
CCHCR1-215ENST00000488920 C11orf95C9JLR9 678 aaPredicted RBP16.69■□□□□ 0.26
CCHCR1-215ENST00000488920 EXOC5O00471 708 aa16.69■□□□□ 0.26
CCHCR1-215ENST00000488920 FBLN1P23142 703 aa16.69■□□□□ 0.26
CCHCR1-215ENST00000488920 ANKRD24Q8TF21 1146 aa16.69■□□□□ 0.26
CCHCR1-215ENST00000488920 OVOS2A0A0J9YW53 1432 aa16.68■□□□□ 0.26
CCHCR1-215ENST00000488920 OVOS2Q6IE36 1432 aa16.68■□□□□ 0.26
CCHCR1-215ENST00000488920 ERBB3P21860 1342 aa16.68■□□□□ 0.26
CCHCR1-215ENST00000488920 ANKRD36BQ8N2N9 1353 aa16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 CCDC7Q96M83 1385 aa16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 CDCA8Q53HL2 280 aa16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 PTF1AQ7RTS3 328 aa16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 CCER1Q8TC90 406 aaPredicted RBP16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 IP6K1Q92551 441 aa16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 LTV1Q96GA3 475 aaPredicted RBP16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 OVOS2A0A0G2JMS6 1433 aa16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 TNS1Q9HBL0 1735 aaKnown RBP16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 PARP4Q9UKK3 1724 aaKnown RBP16.67■□□□□ 0.26
CCHCR1-215ENST00000488920 RGPD5Q99666 1765 aa16.66■□□□□ 0.26
CCHCR1-215ENST00000488920 PARD3Q8TEW0 1356 aa16.65■□□□□ 0.26
CCHCR1-215ENST00000488920 FYB1O15117 783 aa16.65■□□□□ 0.26
CCHCR1-215ENST00000488920 BCL11BQ9C0K0 894 aaPredicted RBP16.65■□□□□ 0.26
CCHCR1-215ENST00000488920 GGNBP2Q9H3C7 697 aa16.65■□□□□ 0.26
CCHCR1-215ENST00000488920 ABCC6O95255 1503 aa16.65■□□□□ 0.26
CCHCR1-215ENST00000488920 MAP3K19Q56UN5 1328 aa16.64■□□□□ 0.25
CCHCR1-215ENST00000488920 LRRC37A3O60309 1634 aa16.63■□□□□ 0.25
CCHCR1-215ENST00000488920 USP54Q70EL1 1684 aa16.63■□□□□ 0.25
CCHCR1-215ENST00000488920 IL2RBP14784 551 aa16.63■□□□□ 0.25
CCHCR1-215ENST00000488920 AMPHP49418 695 aa16.63■□□□□ 0.25
CCHCR1-215ENST00000488920 HOXC9P31274 260 aa16.62■□□□□ 0.25
CCHCR1-215ENST00000488920 NBPF14Q5TI25 921 aa16.62■□□□□ 0.25
CCHCR1-215ENST00000488920 CARD14Q9BXL6 1004 aa16.62■□□□□ 0.25
CCHCR1-215ENST00000488920 PLSCR1O15162 318 aa16.61■□□□□ 0.25
CCHCR1-215ENST00000488920 RRS1Q15050 365 aaKnown RBP16.61■□□□□ 0.25
CCHCR1-215ENST00000488920 PEAK1Q9H792 1746 aa16.61■□□□□ 0.25
CCHCR1-215ENST00000488920 KCNQ2O43526 872 aa16.6■□□□□ 0.25
CCHCR1-215ENST00000488920 POLR3GLQ9BT43 218 aa16.6■□□□□ 0.25
CCHCR1-215ENST00000488920 BCL9O00512 1426 aa16.6■□□□□ 0.25
CCHCR1-215ENST00000488920 ACSBG1Q96GR2 724 aa16.59■□□□□ 0.25
CCHCR1-215ENST00000488920 PROM2Q8N271 834 aa16.58■□□□□ 0.24
CCHCR1-215ENST00000488920 TNS2Q63HR2 1409 aa16.58■□□□□ 0.24
CCHCR1-215ENST00000488920 LTN1O94822 1766 aa16.58■□□□□ 0.24
CCHCR1-215ENST00000488920 DDX54Q8TDD1 881 aaKnown RBP16.57■□□□□ 0.24
CCHCR1-215ENST00000488920 HSPA5P11021 654 aaKnown RBP16.56■□□□□ 0.24
CCHCR1-215ENST00000488920 EIF4G2P78344 907 aaKnown RBP eCLIP16.56■□□□□ 0.24
CCHCR1-215ENST00000488920 WNK3Q9BYP7 1800 aa16.56■□□□□ 0.24
CCHCR1-215ENST00000488920 NSD3Q9BZ95 1437 aa16.54■□□□□ 0.24
CCHCR1-215ENST00000488920 TXNRD1Q16881 649 aa16.54■□□□□ 0.24
CCHCR1-215ENST00000488920 HSP90AB2PQ58FF8 381 aa16.54■□□□□ 0.24
CCHCR1-215ENST00000488920 NBPF6Q5VWK0 638 aa16.54■□□□□ 0.24
CCHCR1-215ENST00000488920 NBPF4Q96M43 638 aa16.54■□□□□ 0.24
CCHCR1-215ENST00000488920 USHBP1Q8N6Y0 703 aa16.53■□□□□ 0.24
CCHCR1-215ENST00000488920 ANO8Q9HCE9 1232 aaPredicted RBP16.53■□□□□ 0.24
CCHCR1-215ENST00000488920 RTL1A6NKG5 1358 aa16.52■□□□□ 0.24
CCHCR1-215ENST00000488920 RREB1Q92766 1687 aa16.52■□□□□ 0.23
CCHCR1-215ENST00000488920 SBF2Q86WG5 1849 aa16.52■□□□□ 0.23
CCHCR1-215ENST00000488920 NUP188Q5SRE5 1749 aa16.51■□□□□ 0.23
CCHCR1-215ENST00000488920 PPM1GO15355 546 aaPredicted RBP16.51■□□□□ 0.23
CCHCR1-215ENST00000488920 ZCRB1Q8TBF4 217 aaKnown RBP16.51■□□□□ 0.23
CCHCR1-215ENST00000488920 EMILIN1Q9Y6C2 1016 aa16.51■□□□□ 0.23
CCHCR1-215ENST00000488920 LRP5O75197 1615 aa16.51■□□□□ 0.23
CCHCR1-215ENST00000488920 CGNL1Q0VF96 1302 aa16.5■□□□□ 0.23
CCHCR1-215ENST00000488920 PDGFDQ9GZP0 370 aaPredicted RBP16.49■□□□□ 0.23
CCHCR1-215ENST00000488920 INSRP06213 1382 aa16.49■□□□□ 0.23
CCHCR1-215ENST00000488920 SMG6Q86US8 1419 aaKnown RBP16.48■□□□□ 0.23
CCHCR1-215ENST00000488920 PRIM1P49642 420 aaKnown RBP16.48■□□□□ 0.23
CCHCR1-215ENST00000488920 RAPGEF4Q8WZA2 1011 aa16.48■□□□□ 0.23
CCHCR1-215ENST00000488920 PANK3Q9H999 370 aa16.48■□□□□ 0.23
CCHCR1-215ENST00000488920 SPON1Q9HCB6 807 aa16.48■□□□□ 0.23
CCHCR1-215ENST00000488920 STK32BQ9NY57 414 aa16.48■□□□□ 0.23
CCHCR1-215ENST00000488920 FLT4P35916 1363 aa16.48■□□□□ 0.23
CCHCR1-215ENST00000488920 MYOM1P52179 1685 aa16.47■□□□□ 0.23
CCHCR1-215ENST00000488920 TNNT2P45379 298 aaPredicted RBP16.47■□□□□ 0.23
CCHCR1-215ENST00000488920 SYTL4Q96C24 671 aaPredicted RBP16.47■□□□□ 0.23
CCHCR1-215ENST00000488920 MEGF6O75095 1541 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms