RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 THRAP3Q9Y2W1 955 aaKnown RBP28.53■■■□□ 2.16
HDAC4-209ENST00000487617 CRB1P82279 1406 aa28.52■■■□□ 2.16
HDAC4-209ENST00000487617 SF3B2Q13435 895 aaKnown RBP28.51■■■□□ 2.15
HDAC4-209ENST00000487617 FAM182BQ5T319 152 aa28.51■■■□□ 2.15
HDAC4-209ENST00000487617 TOM1L2Q6ZVM7 507 aa28.51■■■□□ 2.15
HDAC4-209ENST00000487617 COL18A1P39060 1754 aa28.5■■■□□ 2.15
HDAC4-209ENST00000487617 EP400Q96L91 3159 aa28.49■■■□□ 2.15
HDAC4-209ENST00000487617 USP54Q70EL1 1684 aa28.48■■■□□ 2.15
HDAC4-209ENST00000487617 WDR17Q8IZU2 1322 aa28.48■■■□□ 2.15
HDAC4-209ENST00000487617 CSB-PGBD3P0DP91 1061 aa28.48■■■□□ 2.15
HDAC4-209ENST00000487617 OVOS2A0A0J9YW53 1432 aa28.48■■■□□ 2.15
HDAC4-209ENST00000487617 OVOS2Q6IE36 1432 aa28.48■■■□□ 2.15
HDAC4-209ENST00000487617 EIF4G2P78344 907 aaKnown RBP eCLIP28.47■■■□□ 2.156e-7■■■■■ 52.6
HDAC4-209ENST00000487617 PDE3BQ13370 1112 aa28.46■■■□□ 2.15
HDAC4-209ENST00000487617 COG3Q96JB2 828 aa28.46■■■□□ 2.15
HDAC4-209ENST00000487617 HSPA5P11021 654 aaKnown RBP28.43■■■□□ 2.14
HDAC4-209ENST00000487617 DEFB132Q7Z7B7 95 aa28.43■■■□□ 2.14
HDAC4-209ENST00000487617 ABCC6O95255 1503 aa28.43■■■□□ 2.14
HDAC4-209ENST00000487617 FAM196AQ6ZSG2 479 aa28.41■■■□□ 2.14
HDAC4-209ENST00000487617 CARD10Q9BWT7 1032 aa28.41■■■□□ 2.14
HDAC4-209ENST00000487617 POLR3GLQ9BT43 218 aa28.4■■■□□ 2.14
HDAC4-209ENST00000487617 FYB1O15117 783 aa28.38■■■□□ 2.13
HDAC4-209ENST00000487617 GGNBP2Q9H3C7 697 aa28.38■■■□□ 2.13
HDAC4-209ENST00000487617 RGPD5Q99666 1765 aa28.37■■■□□ 2.13
HDAC4-209ENST00000487617 BAG6P46379 1132 aa28.37■■■□□ 2.13
HDAC4-209ENST00000487617 ERBB3P21860 1342 aa28.36■■■□□ 2.13
HDAC4-209ENST00000487617 DDB1Q16531 1140 aa28.35■■■□□ 2.13
HDAC4-209ENST00000487617 ANKRD24Q8TF21 1146 aa28.35■■■□□ 2.13
HDAC4-209ENST00000487617 CDCA7Q9BWT1 371 aaPredicted RBP28.35■■■□□ 2.13
HDAC4-209ENST00000487617 CARD14Q9BXL6 1004 aa28.35■■■□□ 2.13
HDAC4-209ENST00000487617 TRIM37O94972 964 aa28.34■■■□□ 2.13
HDAC4-209ENST00000487617 IP6K1Q92551 441 aa28.34■■■□□ 2.13
HDAC4-209ENST00000487617 NLRP2Q9NX02 1062 aa28.34■■■□□ 2.13
HDAC4-209ENST00000487617 CCDC7Q96M83 1385 aa28.34■■■□□ 2.13
HDAC4-209ENST00000487617 LTN1O94822 1766 aa28.34■■■□□ 2.13
HDAC4-209ENST00000487617 MYOM1P52179 1685 aa28.33■■■□□ 2.13
HDAC4-209ENST00000487617 PARP4Q9UKK3 1724 aaKnown RBP28.33■■■□□ 2.13
HDAC4-209ENST00000487617 FBLN1P23142 703 aa28.33■■■□□ 2.13
HDAC4-209ENST00000487617 MAP3K19Q56UN5 1328 aa28.32■■■□□ 2.12
HDAC4-209ENST00000487617 NSD3Q9BZ95 1437 aa28.32■■■□□ 2.12
HDAC4-209ENST00000487617 AMPHP49418 695 aa28.31■■■□□ 2.12
HDAC4-209ENST00000487617 EN1Q05925 392 aaPredicted RBP28.29■■■□□ 2.12
HDAC4-209ENST00000487617 LTV1Q96GA3 475 aaPredicted RBP28.29■■■□□ 2.12
HDAC4-209ENST00000487617 RGPD1P0DJD0 1748 aa28.29■■■□□ 2.12
HDAC4-209ENST00000487617 DISP2A7MBM2 1401 aa28.28■■■□□ 2.12
HDAC4-209ENST00000487617 LRRC37A3O60309 1634 aa28.28■■■□□ 2.12
HDAC4-209ENST00000487617 C11orf95C9JLR9 678 aaPredicted RBP28.27■■■□□ 2.12
HDAC4-209ENST00000487617 HOXC9P31274 260 aa28.27■■■□□ 2.12
HDAC4-209ENST00000487617 RRS1Q15050 365 aaKnown RBP28.27■■■□□ 2.12
HDAC4-209ENST00000487617 OVOS2A0A0G2JMS6 1433 aa28.26■■■□□ 2.11
HDAC4-209ENST00000487617 EXOC5O00471 708 aa28.25■■■□□ 2.11
HDAC4-209ENST00000487617 APBA3O96018 575 aa28.24■■■□□ 2.11
HDAC4-209ENST00000487617 WNK3Q9BYP7 1800 aa28.24■■■□□ 2.11
HDAC4-209ENST00000487617 CGNL1Q0VF96 1302 aa28.23■■■□□ 2.11
HDAC4-209ENST00000487617 MARCH10Q8NA82 808 aaPredicted RBP28.23■■■□□ 2.11
HDAC4-209ENST00000487617 KIF20BQ96Q89 1820 aa28.22■■■□□ 2.11
HDAC4-209ENST00000487617 IL2RBP14784 551 aa28.22■■■□□ 2.11
HDAC4-209ENST00000487617 TNS1Q9HBL0 1735 aaKnown RBP28.22■■■□□ 2.11
HDAC4-209ENST00000487617 RTL1A6NKG5 1358 aa28.22■■■□□ 2.11
HDAC4-209ENST00000487617 EZH2Q15910 746 aaKnown RBP28.2■■■□□ 2.1
HDAC4-209ENST00000487617 PANK3Q9H999 370 aa28.19■■■□□ 2.1
HDAC4-209ENST00000487617 TNS2Q63HR2 1409 aa28.18■■■□□ 2.1
HDAC4-209ENST00000487617 CAMKK2Q96RR4 588 aa28.18■■■□□ 2.1
HDAC4-209ENST00000487617 PEAK1Q9H792 1746 aa28.18■■■□□ 2.1
HDAC4-209ENST00000487617 BCL9O00512 1426 aa28.14■■■□□ 2.1
HDAC4-209ENST00000487617 FLT4P35916 1363 aa28.13■■■□□ 2.09
HDAC4-209ENST00000487617 PARD3Q8TEW0 1356 aa28.13■■■□□ 2.09
HDAC4-209ENST00000487617 HSP90AB2PQ58FF8 381 aa28.13■■■□□ 2.09
HDAC4-209ENST00000487617 BCL11BQ9C0K0 894 aaPredicted RBP28.13■■■□□ 2.09
HDAC4-209ENST00000487617 EMILIN1Q9Y6C2 1016 aa28.13■■■□□ 2.09
HDAC4-209ENST00000487617 FAM208AQ9UK61 1670 aaKnown RBP28.13■■■□□ 2.09
HDAC4-209ENST00000487617 KIF24Q5T7B8 1368 aa28.12■■■□□ 2.09
HDAC4-209ENST00000487617 SMG6Q86US8 1419 aaKnown RBP28.12■■■□□ 2.09
HDAC4-209ENST00000487617 INSRP06213 1382 aa28.11■■■□□ 2.09
HDAC4-209ENST00000487617 PPM1GO15355 546 aaPredicted RBP28.1■■■□□ 2.09
HDAC4-209ENST00000487617 NBPF6Q5VWK0 638 aa28.1■■■□□ 2.09
HDAC4-209ENST00000487617 NBPF4Q96M43 638 aa28.1■■■□□ 2.09
HDAC4-209ENST00000487617 PTF1AQ7RTS3 328 aa28.09■■■□□ 2.09
HDAC4-209ENST00000487617 KIF7Q2M1P5 1343 aa28.09■■■□□ 2.09
HDAC4-209ENST00000487617 PSDA5PKW4 1024 aaPredicted RBP28.08■■■□□ 2.09
HDAC4-209ENST00000487617 TNNT2P45379 298 aaPredicted RBP28.07■■■□□ 2.08
HDAC4-209ENST00000487617 USHBP1Q8N6Y0 703 aa28.07■■■□□ 2.08
HDAC4-209ENST00000487617 SBF2Q86WG5 1849 aa28.05■■■□□ 2.08
HDAC4-209ENST00000487617 DDX54Q8TDD1 881 aaKnown RBP28.05■■■□□ 2.08
HDAC4-209ENST00000487617 PLSCR1O15162 318 aa28.04■■■□□ 2.08
HDAC4-209ENST00000487617 ACSBG1Q96GR2 724 aa28.04■■■□□ 2.08
HDAC4-209ENST00000487617 POLKQ9UBT6 870 aa28.04■■■□□ 2.08
HDAC4-209ENST00000487617 KNSTRNQ9Y448 316 aa28.04■■■□□ 2.08
HDAC4-209ENST00000487617 NSD2O96028 1365 aa28.03■■■□□ 2.08
HDAC4-209ENST00000487617 KCNQ2O43526 872 aa28.03■■■□□ 2.08
HDAC4-209ENST00000487617 R3HDM1Q15032 1099 aaKnown RBP28.03■■■□□ 2.08
HDAC4-209ENST00000487617 RGPD2P0DJD1 1756 aa28.02■■■□□ 2.08
HDAC4-209ENST00000487617 WASHC2AQ641Q2 1341 aa28.02■■■□□ 2.08
HDAC4-209ENST00000487617 ZCRB1Q8TBF4 217 aaKnown RBP28.02■■■□□ 2.08
HDAC4-209ENST00000487617 RAPGEF4Q8WZA2 1011 aa28.02■■■□□ 2.08
HDAC4-209ENST00000487617 MEGF6O75095 1541 aa28.02■■■□□ 2.08
HDAC4-209ENST00000487617 NBPF14Q5TI25 921 aa27.99■■■□□ 2.07
HDAC4-209ENST00000487617 MORC1Q86VD1 984 aa27.99■■■□□ 2.07
HDAC4-209ENST00000487617 RREB1Q92766 1687 aa27.99■■■□□ 2.07
HDAC4-209ENST00000487617 ANKRD26Q9UPS8 1709 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms