RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 ZNF830Q96NB3 372 aaPredicted RBP13.05□□□□□ -0.32
CCDC171-208ENST00000486641 IL16Q14005 1332 aa13.04□□□□□ -0.32
CCDC171-208ENST00000486641 GTF2F1P35269 517 aaKnown RBP eCLIP13.04□□□□□ -0.32
CCDC171-208ENST00000486641 PPP4R3BQ5MIZ7 849 aa13.04□□□□□ -0.32
CCDC171-208ENST00000486641 FOXD4L5Q5VV16 416 aaPredicted RBP13.04□□□□□ -0.32
CCDC171-208ENST00000486641 FOXD4L4Q8WXT5 416 aaPredicted RBP13.04□□□□□ -0.32
CCDC171-208ENST00000486641 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.04□□□□□ -0.32
CCDC171-208ENST00000486641 MYO3AQ8NEV4 1616 aa13.04□□□□□ -0.32
CCDC171-208ENST00000486641 MED14O60244 1454 aa13.04□□□□□ -0.32
CCDC171-208ENST00000486641 HMGN5P82970 282 aaKnown RBP13.04□□□□□ -0.32
CCDC171-208ENST00000486641 PLEKHM2Q8IWE5 1019 aa13.04□□□□□ -0.32
CCDC171-208ENST00000486641 TSPY26PQ9H489 355 aa13.04□□□□□ -0.32
CCDC171-208ENST00000486641 PPRC1Q5VV67 1664 aaKnown RBP13.03□□□□□ -0.32
CCDC171-208ENST00000486641 NOLC1Q14978 699 aaKnown RBP eCLIP13.03□□□□□ -0.32
CCDC171-208ENST00000486641 TRAK1Q9UPV9 953 aa13.03□□□□□ -0.32
CCDC171-208ENST00000486641 PIBF1Q8WXW3 757 aa13.02□□□□□ -0.32
CCDC171-208ENST00000486641 ST18O60284 1047 aa13.02□□□□□ -0.33
CCDC171-208ENST00000486641 KIF20AO95235 890 aa13.02□□□□□ -0.33
CCDC171-208ENST00000486641 MBD3O95983 291 aa13.02□□□□□ -0.33
CCDC171-208ENST00000486641 USP32Q8NFA0 1604 aa13.02□□□□□ -0.33
CCDC171-208ENST00000486641 C17orf53Q8N3J3 647 aaPredicted RBP13.01□□□□□ -0.33
CCDC171-208ENST00000486641 TTC22Q5TAA0 569 aa13.01□□□□□ -0.33
CCDC171-208ENST00000486641 C16orf71Q8IYS4 520 aaPredicted RBP13.01□□□□□ -0.33
CCDC171-208ENST00000486641 MYOM2P54296 1465 aa13.01□□□□□ -0.33
CCDC171-208ENST00000486641 LETM1O95202 739 aaPredicted RBP13□□□□□ -0.33
CCDC171-208ENST00000486641 BRPF1P55201 1214 aaPredicted RBP13□□□□□ -0.33
CCDC171-208ENST00000486641 KIF3AQ9Y496 699 aa13□□□□□ -0.33
CCDC171-208ENST00000486641 SPDYE4A6NLX3 237 aa13□□□□□ -0.33
CCDC171-208ENST00000486641 CHMP4BQ9H444 224 aaKnown RBP13□□□□□ -0.33
CCDC171-208ENST00000486641 REREQ9P2R6 1566 aa12.99□□□□□ -0.33
CCDC171-208ENST00000486641 INTS3Q68E01 1043 aaKnown RBP12.99□□□□□ -0.33
CCDC171-208ENST00000486641 MRPL50Q8N5N7 158 aaKnown RBP12.99□□□□□ -0.33
CCDC171-208ENST00000486641 TTC12Q9H892 705 aaPredicted RBP12.99□□□□□ -0.33
CCDC171-208ENST00000486641 BCL2L12Q9HB09 334 aa12.99□□□□□ -0.33
CCDC171-208ENST00000486641 UGGT1Q9NYU2 1555 aa12.99□□□□□ -0.33
CCDC171-208ENST00000486641 TRAPPC8Q9Y2L5 1435 aa12.99□□□□□ -0.33
CCDC171-208ENST00000486641 CFAP44Q96MT7 982 aa12.99□□□□□ -0.33
CCDC171-208ENST00000486641 BBXQ8WY36 941 aaPredicted RBP12.97□□□□□ -0.33
CCDC171-208ENST00000486641 ARHGAP45Q92619 1136 aa12.97□□□□□ -0.33
CCDC171-208ENST00000486641 PIK3R4Q99570 1358 aa12.97□□□□□ -0.33
CCDC171-208ENST00000486641 QRICH2Q9H0J4 1663 aa12.97□□□□□ -0.33
CCDC171-208ENST00000486641 VAMP4O75379 141 aa12.97□□□□□ -0.33
CCDC171-208ENST00000486641 FKBP5Q13451 457 aaPredicted RBP12.97□□□□□ -0.33
CCDC171-208ENST00000486641 SPTLC3Q9NUV7 552 aa12.97□□□□□ -0.33
CCDC171-208ENST00000486641 USP25Q9UHP3 1055 aa12.97□□□□□ -0.33
CCDC171-208ENST00000486641 TET3O43151 1660 aa12.97□□□□□ -0.33
CCDC171-208ENST00000486641 ZC3H13Q5T200 1668 aaKnown RBP12.97□□□□□ -0.33
CCDC171-208ENST00000486641 BRD1O95696 1058 aa12.96□□□□□ -0.33
CCDC171-208ENST00000486641 SDSP20132 328 aa12.96□□□□□ -0.33
CCDC171-208ENST00000486641 PDCL2Q8N4E4 241 aa12.96□□□□□ -0.33
CCDC171-208ENST00000486641 OTUD7AQ8TE49 926 aaPredicted RBP12.96□□□□□ -0.33
CCDC171-208ENST00000486641 NEURL4Q96JN8 1562 aa12.96□□□□□ -0.33
CCDC171-208ENST00000486641 IGSF3O75054 1194 aa12.96□□□□□ -0.34
CCDC171-208ENST00000486641 GADD45BO75293 160 aaPredicted RBP12.96□□□□□ -0.34
CCDC171-208ENST00000486641 UVSSAQ2YD98 709 aa12.96□□□□□ -0.34
CCDC171-208ENST00000486641 SYAP1Q96A49 352 aaPredicted RBP12.96□□□□□ -0.34
CCDC171-208ENST00000486641 DCTPP1Q9H773 170 aa12.96□□□□□ -0.34
CCDC171-208ENST00000486641 NSD2O96028 1365 aa12.96□□□□□ -0.34
CCDC171-208ENST00000486641 INO80Q9ULG1 1556 aaPredicted RBP12.95□□□□□ -0.34
CCDC171-208ENST00000486641 ADCY5O95622 1261 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 TMEM132EQ6IEE7 984 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 TSPYL6Q8N831 410 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 ZNF428Q96B54 188 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 TMX3Q96JJ7 454 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 ATAD2Q6PL18 1390 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 IFT172Q9UG01 1749 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 PTCH1Q13635 1447 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 GTF2E1P29083 439 aaPredicted RBP12.95□□□□□ -0.34
CCDC171-208ENST00000486641 ANKRD36BQ8N2N9 1353 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 COL3A1P02461 1466 aaPredicted RBP12.95□□□□□ -0.34
CCDC171-208ENST00000486641 NRXN1Q9ULB1 1477 aa12.95□□□□□ -0.34
CCDC171-208ENST00000486641 ABCC4O15439 1325 aa12.94□□□□□ -0.34
CCDC171-208ENST00000486641 U2AF2P26368 475 aaKnown RBP eCLIP12.94□□□□□ -0.34
CCDC171-208ENST00000486641 GDPD2Q9HCC8 539 aa12.94□□□□□ -0.34
CCDC171-208ENST00000486641 SPAG9O60271 1321 aaKnown RBP12.94□□□□□ -0.34
CCDC171-208ENST00000486641 KIF1BO60333 1816 aa12.94□□□□□ -0.34
CCDC171-208ENST00000486641 ELL2O00472 640 aaPredicted RBP12.94□□□□□ -0.34
CCDC171-208ENST00000486641 NEK4P51957 841 aa12.94□□□□□ -0.34
CCDC171-208ENST00000486641 FOXD4L6Q3SYB3 417 aaPredicted RBP12.94□□□□□ -0.34
CCDC171-208ENST00000486641 FOXD4L3Q6VB84 417 aaPredicted RBP12.94□□□□□ -0.34
CCDC171-208ENST00000486641 GGNBP2Q9H3C7 697 aa12.94□□□□□ -0.34
CCDC171-208ENST00000486641 EFCAB2Q5VUJ9 269 aa12.93□□□□□ -0.34
CCDC171-208ENST00000486641 CASC1Q6TDU7 716 aa12.93□□□□□ -0.34
CCDC171-208ENST00000486641 AFAP1Q8N556 730 aa12.93□□□□□ -0.34
CCDC171-208ENST00000486641 FAM184AQ8NB25 1140 aa12.93□□□□□ -0.34
CCDC171-208ENST00000486641 SETBP1Q9Y6X0 1596 aa12.93□□□□□ -0.34
CCDC171-208ENST00000486641 RIOK3O14730 519 aaKnown RBP12.93□□□□□ -0.34
CCDC171-208ENST00000486641 SMARCA5O60264 1052 aaPredicted RBP12.93□□□□□ -0.34
CCDC171-208ENST00000486641 PHF14O94880 888 aa12.93□□□□□ -0.34
CCDC171-208ENST00000486641 REC8O95072 547 aa12.93□□□□□ -0.34
CCDC171-208ENST00000486641 ANKRD7Q92527 254 aa12.93□□□□□ -0.34
CCDC171-208ENST00000486641 DEPDC5O75140 1603 aa12.93□□□□□ -0.34
CCDC171-208ENST00000486641 KNDC1Q76NI1 1749 aa12.92□□□□□ -0.34
CCDC171-208ENST00000486641 USP48Q86UV5 1035 aa12.92□□□□□ -0.34
CCDC171-208ENST00000486641 MROH2AA6NES4 1674 aa12.92□□□□□ -0.34
CCDC171-208ENST00000486641 PLCH2O75038 1416 aa12.92□□□□□ -0.34
CCDC171-208ENST00000486641 C14orf93Q9H972 538 aaKnown RBP12.91□□□□□ -0.34
CCDC171-208ENST00000486641 CABP2Q9NPB3 220 aa12.91□□□□□ -0.34
CCDC171-208ENST00000486641 ERC2O15083 957 aa12.91□□□□□ -0.34
CCDC171-208ENST00000486641 DIAPH1O60610 1272 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms