RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 ABTB2Q8N961 1025 aa12.36□□□□□ -0.43
COL12A1-208ENST00000486533 EVC2Q86UK5 1308 aa12.35□□□□□ -0.43
COL12A1-208ENST00000486533 ZC3H6P61129 1189 aaKnown RBP12.35□□□□□ -0.43
COL12A1-208ENST00000486533 DDX10Q13206 875 aaKnown RBP12.35□□□□□ -0.43
COL12A1-208ENST00000486533 CHRNA2Q15822 529 aa12.35□□□□□ -0.43
COL12A1-208ENST00000486533 FAM98CQ17RN3 349 aaKnown RBP12.35□□□□□ -0.43
COL12A1-208ENST00000486533 CABP1Q9NZU7 370 aa12.35□□□□□ -0.43
COL12A1-208ENST00000486533 CCDC125Q86Z20 511 aa12.34□□□□□ -0.43
COL12A1-208ENST00000486533 ONECUT3O60422 494 aaPredicted RBP12.33□□□□□ -0.44
COL12A1-208ENST00000486533 KRT27Q7Z3Y8 459 aa12.33□□□□□ -0.44
COL12A1-208ENST00000486533 NRKQ7Z2Y5 1582 aa12.33□□□□□ -0.44
COL12A1-208ENST00000486533 CARD11Q9BXL7 1154 aa12.32□□□□□ -0.44
COL12A1-208ENST00000486533 STRN4Q9NRL3 753 aa12.32□□□□□ -0.44
COL12A1-208ENST00000486533 CREBZFQ9NS37 354 aa12.32□□□□□ -0.44
COL12A1-208ENST00000486533 USP6P35125 1406 aa12.32□□□□□ -0.44
COL12A1-208ENST00000486533 SPATA31A5Q5VU36 1347 aa12.32□□□□□ -0.44
COL12A1-208ENST00000486533 SPATA31A7Q8IWB4 1347 aa12.32□□□□□ -0.44
COL12A1-208ENST00000486533 BLMP54132 1417 aaPredicted RBP12.31□□□□□ -0.44
COL12A1-208ENST00000486533 NLRP13Q86W25 1043 aa12.31□□□□□ -0.44
COL12A1-208ENST00000486533 USP19O94966 1318 aa12.31□□□□□ -0.44
COL12A1-208ENST00000486533 SF3B2Q13435 895 aaKnown RBP12.3□□□□□ -0.44
COL12A1-208ENST00000486533 PROM2Q8N271 834 aa12.3□□□□□ -0.44
COL12A1-208ENST00000486533 BRD4O60885 1362 aaPredicted RBP12.3□□□□□ -0.44
COL12A1-208ENST00000486533 EVA1CP58658 441 aa12.3□□□□□ -0.44
COL12A1-208ENST00000486533 ZBTB7CA1YPR0 619 aa12.29□□□□□ -0.44
COL12A1-208ENST00000486533 GCP02774 474 aa12.29□□□□□ -0.44
COL12A1-208ENST00000486533 NLRP6P59044 892 aa12.29□□□□□ -0.44
COL12A1-208ENST00000486533 USP35Q9P2H5 1018 aa12.29□□□□□ -0.44
COL12A1-208ENST00000486533 SPATA31A1Q5TZJ5 1347 aa12.28□□□□□ -0.44
COL12A1-208ENST00000486533 CPDO75976 1380 aa12.28□□□□□ -0.44
COL12A1-208ENST00000486533 AKAP12Q02952 1782 aa12.28□□□□□ -0.44
COL12A1-208ENST00000486533 PIK3C2AO00443 1686 aa12.27□□□□□ -0.44
COL12A1-208ENST00000486533 THSD7AQ9UPZ6 1657 aa12.27□□□□□ -0.44
COL12A1-208ENST00000486533 ZRANB1Q9UGI0 708 aa12.27□□□□□ -0.44
COL12A1-208ENST00000486533 SSH2Q76I76 1423 aa12.27□□□□□ -0.45
COL12A1-208ENST00000486533 CAMTA1Q9Y6Y1 1673 aa12.27□□□□□ -0.45
COL12A1-208ENST00000486533 SBNO2Q9Y2G9 1366 aa12.27□□□□□ -0.45
COL12A1-208ENST00000486533 CD44P16070 742 aaKnown RBP12.26□□□□□ -0.45
COL12A1-208ENST00000486533 FAM182BQ5T319 152 aa12.26□□□□□ -0.45
COL12A1-208ENST00000486533 DEFB132Q7Z7B7 95 aa12.26□□□□□ -0.45
COL12A1-208ENST00000486533 LMO7Q8WWI1 1683 aa12.26□□□□□ -0.45
COL12A1-208ENST00000486533 EIF4G2P78344 907 aaKnown RBP eCLIP12.26□□□□□ -0.45
COL12A1-208ENST00000486533 LARP1Q6PKG0 1096 aaKnown RBP12.26□□□□□ -0.45
COL12A1-208ENST00000486533 TTC21BQ7Z4L5 1316 aa12.25□□□□□ -0.45
COL12A1-208ENST00000486533 KTN1Q86UP2 1357 aaKnown RBP12.25□□□□□ -0.45
COL12A1-208ENST00000486533 SLIT3O75094 1523 aa12.25□□□□□ -0.45
COL12A1-208ENST00000486533 GABBR2O75899 941 aa12.25□□□□□ -0.45
COL12A1-208ENST00000486533 CPSF1Q10570 1443 aaKnown RBP12.24□□□□□ -0.45
COL12A1-208ENST00000486533 SOX12O15370 315 aa12.24□□□□□ -0.45
COL12A1-208ENST00000486533 TMC1Q8TDI8 760 aa12.24□□□□□ -0.45
COL12A1-208ENST00000486533 COL5A2P05997 1499 aaPredicted RBP12.24□□□□□ -0.45
COL12A1-208ENST00000486533 TCP11L2Q8N4U5 519 aa12.23□□□□□ -0.45
COL12A1-208ENST00000486533 MON2Q7Z3U7 1717 aa12.23□□□□□ -0.45
COL12A1-208ENST00000486533 TTC21AQ8NDW8 1320 aa12.23□□□□□ -0.45
COL12A1-208ENST00000486533 RGPD1P0DJD0 1748 aa12.22□□□□□ -0.45
COL12A1-208ENST00000486533 BAG6P46379 1132 aa12.22□□□□□ -0.45
COL12A1-208ENST00000486533 BARGINQ6ZT62 677 aa12.22□□□□□ -0.45
COL12A1-208ENST00000486533 AATKQ6ZMQ8 1374 aa12.22□□□□□ -0.45
COL12A1-208ENST00000486533 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.22□□□□□ -0.45
COL12A1-208ENST00000486533 KCNH5Q8NCM2 988 aa12.22□□□□□ -0.45
COL12A1-208ENST00000486533 PDE3BQ13370 1112 aa12.21□□□□□ -0.46
COL12A1-208ENST00000486533 HDGFL2Q7Z4V5 671 aaPredicted RBP12.21□□□□□ -0.46
COL12A1-208ENST00000486533 CRB1P82279 1406 aa12.2□□□□□ -0.46
COL12A1-208ENST00000486533 ST20-MTHFSA0A0A6YYL1 179 aa12.2□□□□□ -0.46
COL12A1-208ENST00000486533 ERICH6BQ5W0A0 696 aa12.2□□□□□ -0.46
COL12A1-208ENST00000486533 THRAP3Q9Y2W1 955 aaKnown RBP12.2□□□□□ -0.46
COL12A1-208ENST00000486533 CD163L1Q9NR16 1453 aa12.2□□□□□ -0.46
COL12A1-208ENST00000486533 TRIM37O94972 964 aa12.19□□□□□ -0.46
COL12A1-208ENST00000486533 FAM196AQ6ZSG2 479 aa12.19□□□□□ -0.46
COL12A1-208ENST00000486533 TOM1L2Q6ZVM7 507 aa12.19□□□□□ -0.46
COL12A1-208ENST00000486533 SLC12A5Q9H2X9 1139 aa12.19□□□□□ -0.46
COL12A1-208ENST00000486533 TNS1Q9HBL0 1735 aaKnown RBP12.19□□□□□ -0.46
COL12A1-208ENST00000486533 COL18A1P39060 1754 aa12.19□□□□□ -0.46
COL12A1-208ENST00000486533 EN1Q05925 392 aaPredicted RBP12.18□□□□□ -0.46
COL12A1-208ENST00000486533 FKBP8Q14318 412 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 ARHGEF25Q86VW2 580 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 TERF2IPQ9NYB0 399 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 AXIN2Q9Y2T1 843 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 NFAT5O94916 1531 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 RGPD5Q99666 1765 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 PARP4Q9UKK3 1724 aaKnown RBP12.18□□□□□ -0.46
COL12A1-208ENST00000486533 A0A1W2PP64 1363 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 WDR17Q8IZU2 1322 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 CSB-PGBD3P0DP91 1061 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 NME9Q86XW9 330 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 TESK2Q96S53 571 aa12.18□□□□□ -0.46
COL12A1-208ENST00000486533 EDC4Q6P2E9 1401 aaKnown RBP12.17□□□□□ -0.46
COL12A1-208ENST00000486533 HSPA5P11021 654 aaKnown RBP12.17□□□□□ -0.46
COL12A1-208ENST00000486533 USP47Q96K76 1375 aa12.16□□□□□ -0.46
COL12A1-208ENST00000486533 SLC24A1O60721 1099 aa12.16□□□□□ -0.46
COL12A1-208ENST00000486533 PUS7Q96PZ0 661 aaKnown RBP12.16□□□□□ -0.46
COL12A1-208ENST00000486533 DISP2A7MBM2 1401 aa12.15□□□□□ -0.46
COL12A1-208ENST00000486533 USP31Q70CQ4 1352 aa12.15□□□□□ -0.46
COL12A1-208ENST00000486533 USP54Q70EL1 1684 aa12.15□□□□□ -0.46
COL12A1-208ENST00000486533 MNX1P50219 401 aaPredicted RBP12.15□□□□□ -0.46
COL12A1-208ENST00000486533 LRRC37A3O60309 1634 aa12.15□□□□□ -0.46
COL12A1-208ENST00000486533 WNK3Q9BYP7 1800 aa12.15□□□□□ -0.46
COL12A1-208ENST00000486533 LTN1O94822 1766 aa12.15□□□□□ -0.46
COL12A1-208ENST00000486533 NINLQ9Y2I6 1382 aa12.15□□□□□ -0.47
COL12A1-208ENST00000486533 PSDA5PKW4 1024 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms