RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CRB1P82279 1406 aa23.65■■□□□ 1.38
VIM-205ENST00000485947 ABCC6O95255 1503 aa23.64■■□□□ 1.38
VIM-205ENST00000485947 C11orf95C9JLR9 678 aaPredicted RBP23.64■■□□□ 1.37
VIM-205ENST00000485947 A0A1W2PP64 1363 aa23.64■■□□□ 1.37
VIM-205ENST00000485947 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.63■■□□□ 1.37
VIM-205ENST00000485947 HSPA5P11021 654 aaKnown RBP23.62■■□□□ 1.37
VIM-205ENST00000485947 USP54Q70EL1 1684 aa23.62■■□□□ 1.37
VIM-205ENST00000485947 FAM196AQ6ZSG2 479 aa23.61■■□□□ 1.37
VIM-205ENST00000485947 USP35Q9P2H5 1018 aa23.61■■□□□ 1.37
VIM-205ENST00000485947 WDR17Q8IZU2 1322 aa23.6■■□□□ 1.37
VIM-205ENST00000485947 CDCA7Q9BWT1 371 aaPredicted RBP23.6■■□□□ 1.37
VIM-205ENST00000485947 NFAT5O94916 1531 aa23.59■■□□□ 1.37
VIM-205ENST00000485947 PDE3BQ13370 1112 aa23.59■■□□□ 1.37
VIM-205ENST00000485947 NME9Q86XW9 330 aa23.59■■□□□ 1.37
VIM-205ENST00000485947 ANKRD36BQ8N2N9 1353 aa23.59■■□□□ 1.37
VIM-205ENST00000485947 COL18A1P39060 1754 aa23.59■■□□□ 1.37
VIM-205ENST00000485947 ZBTB7CA1YPR0 619 aa23.58■■□□□ 1.37
VIM-205ENST00000485947 BAG6P46379 1132 aa23.58■■□□□ 1.37
VIM-205ENST00000485947 TOM1L2Q6ZVM7 507 aa23.58■■□□□ 1.37
VIM-205ENST00000485947 AXIN2Q9Y2T1 843 aa23.58■■□□□ 1.37
VIM-205ENST00000485947 CARD10Q9BWT7 1032 aa23.56■■□□□ 1.36
VIM-205ENST00000485947 OVOS2A0A0J9YW53 1432 aa23.55■■□□□ 1.36
VIM-205ENST00000485947 OVOS2Q6IE36 1432 aa23.55■■□□□ 1.36
VIM-205ENST00000485947 PSDA5PKW4 1024 aaPredicted RBP23.54■■□□□ 1.36
VIM-205ENST00000485947 DISP2A7MBM2 1401 aa23.53■■□□□ 1.36
VIM-205ENST00000485947 SOX12O15370 315 aa23.53■■□□□ 1.36
VIM-205ENST00000485947 COG3Q96JB2 828 aa23.53■■□□□ 1.36
VIM-205ENST00000485947 CCDC7Q96M83 1385 aa23.52■■□□□ 1.36
VIM-205ENST00000485947 CSB-PGBD3P0DP91 1061 aa23.52■■□□□ 1.36
VIM-205ENST00000485947 PARP4Q9UKK3 1724 aaKnown RBP23.5■■□□□ 1.35
VIM-205ENST00000485947 DDB1Q16531 1140 aa23.49■■□□□ 1.35
VIM-205ENST00000485947 RGPD1P0DJD0 1748 aa23.49■■□□□ 1.35
VIM-205ENST00000485947 ERBB3P21860 1342 aa23.48■■□□□ 1.35
VIM-205ENST00000485947 PARD3Q8TEW0 1356 aa23.48■■□□□ 1.35
VIM-205ENST00000485947 FAM182BQ5T319 152 aa23.47■■□□□ 1.35
VIM-205ENST00000485947 IP6K1Q92551 441 aa23.47■■□□□ 1.35
VIM-205ENST00000485947 OVOS2A0A0G2JMS6 1433 aa23.45■■□□□ 1.34
VIM-205ENST00000485947 BCL9O00512 1426 aa23.45■■□□□ 1.34
VIM-205ENST00000485947 FYB1O15117 783 aa23.45■■□□□ 1.34
VIM-205ENST00000485947 TRIM37O94972 964 aa23.44■■□□□ 1.34
VIM-205ENST00000485947 EXOC5O00471 708 aa23.42■■□□□ 1.34
VIM-205ENST00000485947 ANKRD24Q8TF21 1146 aa23.42■■□□□ 1.34
VIM-205ENST00000485947 EN1Q05925 392 aaPredicted RBP23.41■■□□□ 1.34
VIM-205ENST00000485947 NLRP2Q9NX02 1062 aa23.41■■□□□ 1.34
VIM-205ENST00000485947 RTL1A6NKG5 1358 aa23.4■■□□□ 1.34
VIM-205ENST00000485947 LTN1O94822 1766 aa23.4■■□□□ 1.34
VIM-205ENST00000485947 RGPD5Q99666 1765 aa23.4■■□□□ 1.34
VIM-205ENST00000485947 MAP3K19Q56UN5 1328 aa23.39■■□□□ 1.34
VIM-205ENST00000485947 APBA3O96018 575 aa23.39■■□□□ 1.33
VIM-205ENST00000485947 CAMKK2Q96RR4 588 aa23.39■■□□□ 1.33
VIM-205ENST00000485947 KIF24Q5T7B8 1368 aa23.39■■□□□ 1.33
VIM-205ENST00000485947 LRRC37A3O60309 1634 aa23.38■■□□□ 1.33
VIM-205ENST00000485947 AMPHP49418 695 aa23.38■■□□□ 1.33
VIM-205ENST00000485947 TNS1Q9HBL0 1735 aaKnown RBP23.38■■□□□ 1.33
VIM-205ENST00000485947 IL2RBP14784 551 aa23.37■■□□□ 1.33
VIM-205ENST00000485947 GGNBP2Q9H3C7 697 aa23.37■■□□□ 1.33
VIM-205ENST00000485947 WASHC2AQ641Q2 1341 aa23.36■■□□□ 1.33
VIM-205ENST00000485947 WNK3Q9BYP7 1800 aa23.36■■□□□ 1.33
VIM-205ENST00000485947 HOXC9P31274 260 aa23.36■■□□□ 1.33
VIM-205ENST00000485947 R3HDM1Q15032 1099 aaKnown RBP23.36■■□□□ 1.33
VIM-205ENST00000485947 CARD14Q9BXL6 1004 aa23.36■■□□□ 1.33
VIM-205ENST00000485947 PEAK1Q9H792 1746 aa23.36■■□□□ 1.33
VIM-205ENST00000485947 TNS2Q63HR2 1409 aa23.35■■□□□ 1.33
VIM-205ENST00000485947 MARCH10Q8NA82 808 aaPredicted RBP23.35■■□□□ 1.33
VIM-205ENST00000485947 BCL11BQ9C0K0 894 aaPredicted RBP23.35■■□□□ 1.33
VIM-205ENST00000485947 CGNL1Q0VF96 1302 aa23.34■■□□□ 1.33
VIM-205ENST00000485947 KIF7Q2M1P5 1343 aa23.34■■□□□ 1.33
VIM-205ENST00000485947 PLSCR1O15162 318 aa23.34■■□□□ 1.33
VIM-205ENST00000485947 NSD3Q9BZ95 1437 aa23.33■■□□□ 1.33
VIM-205ENST00000485947 MYOM1P52179 1685 aa23.33■■□□□ 1.33
VIM-205ENST00000485947 FAM208AQ9UK61 1670 aaKnown RBP23.33■■□□□ 1.33
VIM-205ENST00000485947 EZH2Q15910 746 aaKnown RBP23.33■■□□□ 1.33
VIM-205ENST00000485947 YY1P25490 414 aa23.32■■□□□ 1.32
VIM-205ENST00000485947 DIEXFQ68CQ4 756 aaKnown RBP23.32■■□□□ 1.32
VIM-205ENST00000485947 SMG6Q86US8 1419 aaKnown RBP23.29■■□□□ 1.32
VIM-205ENST00000485947 INSRP06213 1382 aa23.28■■□□□ 1.32
VIM-205ENST00000485947 FLT4P35916 1363 aa23.28■■□□□ 1.32
VIM-205ENST00000485947 RRS1Q15050 365 aaKnown RBP23.28■■□□□ 1.32
VIM-205ENST00000485947 NBPF14Q5TI25 921 aa23.28■■□□□ 1.32
VIM-205ENST00000485947 KIF20BQ96Q89 1820 aa23.28■■□□□ 1.32
VIM-205ENST00000485947 LTV1Q96GA3 475 aaPredicted RBP23.27■■□□□ 1.32
VIM-205ENST00000485947 FBLN1P23142 703 aa23.26■■□□□ 1.31
VIM-205ENST00000485947 RGPD3A6NKT7 1758 aaPredicted RBP23.25■■□□□ 1.31
VIM-205ENST00000485947 RGPD4Q7Z3J3 1758 aa23.25■■□□□ 1.31
VIM-205ENST00000485947 DDX10Q13206 875 aaKnown RBP23.25■■□□□ 1.31
VIM-205ENST00000485947 SBF2Q86WG5 1849 aa23.24■■□□□ 1.31
VIM-205ENST00000485947 POLR3GLQ9BT43 218 aa23.23■■□□□ 1.31
VIM-205ENST00000485947 NSD2O96028 1365 aa23.23■■□□□ 1.31
VIM-205ENST00000485947 RREB1Q92766 1687 aa23.22■■□□□ 1.31
VIM-205ENST00000485947 PANK3Q9H999 370 aa23.21■■□□□ 1.31
VIM-205ENST00000485947 HSP90AB2PQ58FF8 381 aa23.2■■□□□ 1.3
VIM-205ENST00000485947 NBPF6Q5VWK0 638 aa23.2■■□□□ 1.3
VIM-205ENST00000485947 NBPF4Q96M43 638 aa23.2■■□□□ 1.3
VIM-205ENST00000485947 RAPGEF4Q8WZA2 1011 aa23.19■■□□□ 1.3
VIM-205ENST00000485947 ZCRB1Q8TBF4 217 aaKnown RBP23.18■■□□□ 1.3
VIM-205ENST00000485947 EMILIN1Q9Y6C2 1016 aa23.16■■□□□ 1.3
VIM-205ENST00000485947 TATP17735 454 aaPredicted RBP23.15■■□□□ 1.3
VIM-205ENST00000485947 PTF1AQ7RTS3 328 aa23.15■■□□□ 1.3
VIM-205ENST00000485947 DDX54Q8TDD1 881 aaKnown RBP23.15■■□□□ 1.3
VIM-205ENST00000485947 POLKQ9UBT6 870 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms