RNA–Protein interactions for RNA: ENST00000485465.1

CHMP3-207, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 920 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-207ENST00000485465 CCER2I3L3R5 266 aa23.65■■□□□ 1.38
CHMP3-207ENST00000485465 CFAP53Q96M91 514 aa23.65■■□□□ 1.38
CHMP3-207ENST00000485465 INSRP06213 1382 aa23.65■■□□□ 1.38
CHMP3-207ENST00000485465 CCDC184Q52MB2 194 aa23.64■■□□□ 1.37
CHMP3-207ENST00000485465 HSP90AB2PQ58FF8 381 aa23.64■■□□□ 1.37
CHMP3-207ENST00000485465 LRP6O75581 1613 aa23.62■■□□□ 1.37
CHMP3-207ENST00000485465 AXIN2Q9Y2T1 843 aa23.62■■□□□ 1.37
CHMP3-207ENST00000485465 ABCC6O95255 1503 aa23.62■■□□□ 1.37
CHMP3-207ENST00000485465 COL18A1P39060 1754 aa23.62■■□□□ 1.37
CHMP3-207ENST00000485465 MRS2Q9HD23 443 aa23.61■■□□□ 1.37
CHMP3-207ENST00000485465 BLMP54132 1417 aaPredicted RBP23.6■■□□□ 1.37
CHMP3-207ENST00000485465 COL3A1P02461 1466 aaPredicted RBP23.6■■□□□ 1.37
CHMP3-207ENST00000485465 COL14A1Q05707 1796 aaKnown RBP23.59■■□□□ 1.37
CHMP3-207ENST00000485465 LMO7Q8WWI1 1683 aa23.58■■□□□ 1.37
CHMP3-207ENST00000485465 DIAPH1O60610 1272 aaKnown RBP23.58■■□□□ 1.37
CHMP3-207ENST00000485465 EIF4A2Q14240 407 aaKnown RBP23.57■■□□□ 1.36
CHMP3-207ENST00000485465 CAMTA1Q9Y6Y1 1673 aa23.57■■□□□ 1.36
CHMP3-207ENST00000485465 IL13P35225 146 aa23.56■■□□□ 1.36
CHMP3-207ENST00000485465 MEX3CQ5U5Q3 659 aaKnown RBP23.56■■□□□ 1.36
CHMP3-207ENST00000485465 ANKRD24Q8TF21 1146 aa23.56■■□□□ 1.36
CHMP3-207ENST00000485465 LTV1Q96GA3 475 aaPredicted RBP23.56■■□□□ 1.36
CHMP3-207ENST00000485465 C8orf37Q96NL8 207 aa23.56■■□□□ 1.36
CHMP3-207ENST00000485465 BTG4Q9NY30 223 aa23.55■■□□□ 1.36
CHMP3-207ENST00000485465 ILDR1Q86SU0 546 aaPredicted RBP23.54■■□□□ 1.36
CHMP3-207ENST00000485465 NGLY1Q96IV0 654 aa23.54■■□□□ 1.36
CHMP3-207ENST00000485465 ERBB3P21860 1342 aa23.54■■□□□ 1.36
CHMP3-207ENST00000485465 RGPD5Q99666 1765 aa23.53■■□□□ 1.36
CHMP3-207ENST00000485465 NUDCQ9Y266 331 aa23.53■■□□□ 1.36
CHMP3-207ENST00000485465 COL5A2P05997 1499 aaPredicted RBP23.52■■□□□ 1.36
CHMP3-207ENST00000485465 EVA1CP58658 441 aa23.52■■□□□ 1.36
CHMP3-207ENST00000485465 SLIT2O94813 1529 aa23.52■■□□□ 1.36
CHMP3-207ENST00000485465 PLCH1Q4KWH8 1693 aa23.51■■□□□ 1.35
CHMP3-207ENST00000485465 FNBP4Q8N3X1 1017 aaPredicted RBP23.51■■□□□ 1.35
CHMP3-207ENST00000485465 PNISRQ8TF01 805 aaKnown RBP23.51■■□□□ 1.35
CHMP3-207ENST00000485465 CSB-PGBD3P0DP91 1061 aa23.5■■□□□ 1.35
CHMP3-207ENST00000485465 STRN4Q9NRL3 753 aa23.5■■□□□ 1.35
CHMP3-207ENST00000485465 U2SURPO15042 1029 aaKnown RBP23.49■■□□□ 1.35
CHMP3-207ENST00000485465 WDR17Q8IZU2 1322 aa23.49■■□□□ 1.35
CHMP3-207ENST00000485465 WDR43Q15061 677 aaKnown RBP eCLIP23.48■■□□□ 1.35
CHMP3-207ENST00000485465 EYA1Q99502 592 aa23.48■■□□□ 1.35
CHMP3-207ENST00000485465 NWD2Q9ULI1 1742 aa23.47■■□□□ 1.35
CHMP3-207ENST00000485465 NBPF6Q5VWK0 638 aa23.47■■□□□ 1.35
CHMP3-207ENST00000485465 NBPF4Q96M43 638 aa23.47■■□□□ 1.35
CHMP3-207ENST00000485465 U2AF1L5P0DN76 240 aaPredicted RBP23.46■■□□□ 1.35
CHMP3-207ENST00000485465 U2AF1Q01081 240 aaKnown RBP eCLIP23.46■■□□□ 1.35
CHMP3-207ENST00000485465 LARP1Q6PKG0 1096 aaKnown RBP23.46■■□□□ 1.35
CHMP3-207ENST00000485465 UNC5CLQ8IV45 518 aa23.46■■□□□ 1.35
CHMP3-207ENST00000485465 IGSF1Q8N6C5 1336 aa23.46■■□□□ 1.35
CHMP3-207ENST00000485465 NLRP2Q9NX02 1062 aa23.46■■□□□ 1.35
CHMP3-207ENST00000485465 NRAPQ86VF7 1730 aa23.45■■□□□ 1.34
CHMP3-207ENST00000485465 BCL9LQ86UU0 1499 aa23.45■■□□□ 1.34
CHMP3-207ENST00000485465 AFF2P51816 1311 aa23.45■■□□□ 1.34
CHMP3-207ENST00000485465 TOM1L2Q6ZVM7 507 aa23.45■■□□□ 1.34
CHMP3-207ENST00000485465 RGPD1P0DJD0 1748 aa23.45■■□□□ 1.34
CHMP3-207ENST00000485465 USP21Q9UK80 565 aa23.44■■□□□ 1.34
CHMP3-207ENST00000485465 ADAMTS8Q9UP79 889 aa23.44■■□□□ 1.34
CHMP3-207ENST00000485465 FAM9BQ8IZU0 186 aa23.43■■□□□ 1.34
CHMP3-207ENST00000485465 FAM208AQ9UK61 1670 aaKnown RBP23.43■■□□□ 1.34
CHMP3-207ENST00000485465 CRB1P82279 1406 aa23.42■■□□□ 1.34
CHMP3-207ENST00000485465 SULT6B1Q6IMI4 303 aa23.42■■□□□ 1.34
CHMP3-207ENST00000485465 USHBP1Q8N6Y0 703 aa23.42■■□□□ 1.34
CHMP3-207ENST00000485465 CARD10Q9BWT7 1032 aa23.42■■□□□ 1.34
CHMP3-207ENST00000485465 HMOX1P09601 288 aa23.41■■□□□ 1.34
CHMP3-207ENST00000485465 NCAPD2Q15021 1401 aa23.41■■□□□ 1.34
CHMP3-207ENST00000485465 RGPD2P0DJD1 1756 aa23.4■■□□□ 1.34
CHMP3-207ENST00000485465 AEBP1Q8IUX7 1158 aa23.4■■□□□ 1.34
CHMP3-207ENST00000485465 FCHSD2O94868 740 aa23.39■■□□□ 1.33
CHMP3-207ENST00000485465 VPS72Q15906 364 aa23.39■■□□□ 1.33
CHMP3-207ENST00000485465 KDRP35968 1356 aa23.39■■□□□ 1.33
CHMP3-207ENST00000485465 RSPH6AQ9H0K4 717 aa23.38■■□□□ 1.33
CHMP3-207ENST00000485465 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.38■■□□□ 1.33
CHMP3-207ENST00000485465 SPATA31A1Q5TZJ5 1347 aa23.36■■□□□ 1.33
CHMP3-207ENST00000485465 SPATA31A5Q5VU36 1347 aa23.36■■□□□ 1.33
CHMP3-207ENST00000485465 SPATA31A7Q8IWB4 1347 aa23.36■■□□□ 1.33
CHMP3-207ENST00000485465 PNNQ9H307 717 aaKnown RBP23.36■■□□□ 1.33
CHMP3-207ENST00000485465 USP35Q9P2H5 1018 aa23.36■■□□□ 1.33
CHMP3-207ENST00000485465 CCDC9Q9Y3X0 531 aaKnown RBP23.36■■□□□ 1.33
CHMP3-207ENST00000485465 TRPC5Q9UL62 973 aaPredicted RBP23.35■■□□□ 1.33
CHMP3-207ENST00000485465 ATRNO75882 1429 aa23.34■■□□□ 1.33
CHMP3-207ENST00000485465 PRKAR2BP31323 418 aa23.34■■□□□ 1.33
CHMP3-207ENST00000485465 TCP11L2Q8N4U5 519 aa23.34■■□□□ 1.33
CHMP3-207ENST00000485465 PLEKHF1Q96S99 279 aa23.34■■□□□ 1.33
CHMP3-207ENST00000485465 ZNF772Q68DY9 489 aaPredicted RBP23.33■■□□□ 1.33
CHMP3-207ENST00000485465 THRAP3Q9Y2W1 955 aaKnown RBP23.33■■□□□ 1.33
CHMP3-207ENST00000485465 CCDC146Q8IYE0 955 aa23.32■■□□□ 1.32
CHMP3-207ENST00000485465 RAPGEF4Q8WZA2 1011 aa23.32■■□□□ 1.32
CHMP3-207ENST00000485465 RUNDC1Q96C34 613 aa23.32■■□□□ 1.32
CHMP3-207ENST00000485465 QTRT2Q9H974 415 aaKnown RBP23.32■■□□□ 1.32
CHMP3-207ENST00000485465 IL2RBP14784 551 aa23.3■■□□□ 1.32
CHMP3-207ENST00000485465 TATP17735 454 aaPredicted RBP23.3■■□□□ 1.32
CHMP3-207ENST00000485465 GJD4Q96KN9 370 aaPredicted RBP23.3■■□□□ 1.32
CHMP3-207ENST00000485465 BARGINQ6ZT62 677 aa23.29■■□□□ 1.32
CHMP3-207ENST00000485465 PHACTR3Q96KR7 559 aa23.29■■□□□ 1.32
CHMP3-207ENST00000485465 MEGF6O75095 1541 aa23.28■■□□□ 1.32
CHMP3-207ENST00000485465 NEFMP07197 916 aa23.28■■□□□ 1.32
CHMP3-207ENST00000485465 MAPK8IP3Q9UPT6 1336 aa23.28■■□□□ 1.32
CHMP3-207ENST00000485465 DISP2A7MBM2 1401 aa23.27■■□□□ 1.32
CHMP3-207ENST00000485465 PHF23Q9BUL5 403 aaPredicted RBP23.27■■□□□ 1.32
CHMP3-207ENST00000485465 RGS17Q9UGC6 210 aaPredicted RBP23.27■■□□□ 1.32
CHMP3-207ENST00000485465 PLEKHG2Q9H7P9 1386 aa23.27■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms