RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 NR3C2P08235 984 aa7.85□□□□□ -1.15
VPS50-216ENST00000484954 CTHP32929 405 aa7.85□□□□□ -1.15
VPS50-216ENST00000484954 IL27Q8NEV9 243 aa7.85□□□□□ -1.15
VPS50-216ENST00000484954 FOXJ1Q92949 421 aa7.85□□□□□ -1.15
VPS50-216ENST00000484954 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS50-216ENST00000484954 F12P00748 615 aaPredicted RBP7.84□□□□□ -1.15
VPS50-216ENST00000484954 DNMT3LQ9UJW3 386 aa7.84□□□□□ -1.15
VPS50-216ENST00000484954 UPP2O95045 317 aa7.83□□□□□ -1.16
VPS50-216ENST00000484954 LINC00528Q8N1L1 170 aa7.83□□□□□ -1.16
VPS50-216ENST00000484954 IRS1P35568 1242 aa7.82□□□□□ -1.16
VPS50-216ENST00000484954 CTDSPL2Q05D32 466 aa7.82□□□□□ -1.16
VPS50-216ENST00000484954 COL25A1Q9BXS0 654 aaPredicted RBP7.82□□□□□ -1.16
VPS50-216ENST00000484954 SOS2Q07890 1332 aaPredicted RBP7.81□□□□□ -1.16
VPS50-216ENST00000484954 ZNF385CQ66K41 422 aaPredicted RBP7.81□□□□□ -1.16
VPS50-216ENST00000484954 SVOPQ8N4V2 548 aa7.81□□□□□ -1.16
VPS50-216ENST00000484954 CDK15Q96Q40 435 aa7.81□□□□□ -1.16
VPS50-216ENST00000484954 FIGNL2A6NMB9 653 aa7.8□□□□□ -1.16
VPS50-216ENST00000484954 AGERQ15109 404 aa7.8□□□□□ -1.16
VPS50-216ENST00000484954 WHAMMQ8TF30 809 aa7.8□□□□□ -1.16
VPS50-216ENST00000484954 ATP1B4Q9UN42 357 aaPredicted RBP7.8□□□□□ -1.16
VPS50-216ENST00000484954 NR5A1Q13285 461 aa7.79□□□□□ -1.16
VPS50-216ENST00000484954 PPP2R2DQ66LE6 453 aa7.79□□□□□ -1.16
VPS50-216ENST00000484954 MEIOBQ8N635 442 aa7.79□□□□□ -1.16
VPS50-216ENST00000484954 LRRN4Q8WUT4 740 aa7.79□□□□□ -1.16
VPS50-216ENST00000484954 GRM5P41594 1212 aa7.78□□□□□ -1.16
VPS50-216ENST00000484954 RNFT1Q5M7Z0 435 aa7.78□□□□□ -1.16
VPS50-216ENST00000484954 HELBQ8NG08 1087 aaPredicted RBP7.78□□□□□ -1.16
VPS50-216ENST00000484954 PTSQ03393 145 aa7.77□□□□□ -1.17
VPS50-216ENST00000484954 C4orf48Q5BLP8 95 aa7.77□□□□□ -1.17
VPS50-216ENST00000484954 DNMT3AQ9Y6K1 912 aaPredicted RBP7.77□□□□□ -1.17
VPS50-216ENST00000484954 IGHA1P01876 353 aa7.76□□□□□ -1.17
VPS50-216ENST00000484954 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.76□□□□□ -1.17
VPS50-216ENST00000484954 TTLL8A6PVC2 850 aa7.75□□□□□ -1.17
VPS50-216ENST00000484954 AP1G2O75843 785 aa7.75□□□□□ -1.17
VPS50-216ENST00000484954 RFC5P40937 340 aa7.75□□□□□ -1.17
VPS50-216ENST00000484954 MARSP56192 900 aaKnown RBP7.75□□□□□ -1.17
VPS50-216ENST00000484954 GOPCQ9HD26 462 aa7.75□□□□□ -1.17
VPS50-216ENST00000484954 FSHRP23945 695 aa7.74□□□□□ -1.17
VPS50-216ENST00000484954 EPS8L1Q8TE68 723 aa7.74□□□□□ -1.17
VPS50-216ENST00000484954 PCMTD1Q96MG8 357 aaPredicted RBP7.74□□□□□ -1.17
VPS50-216ENST00000484954 HMX1Q9NP08 348 aaPredicted RBP7.74□□□□□ -1.17
VPS50-216ENST00000484954 CDC14CA4D256 554 aa7.73□□□□□ -1.17
VPS50-216ENST00000484954 NR6A1Q15406 480 aa7.73□□□□□ -1.17
VPS50-216ENST00000484954 CCDC155Q8N6L0 562 aa7.73□□□□□ -1.17
VPS50-216ENST00000484954 TSEN34Q9BSV6 310 aaKnown RBP7.73□□□□□ -1.17
VPS50-216ENST00000484954 ARHGEF15O94989 841 aa7.72□□□□□ -1.17
VPS50-216ENST00000484954 USP17L8P0C7I0 530 aa7.72□□□□□ -1.17
VPS50-216ENST00000484954 VWA5B2Q8N398 1253 aa7.72□□□□□ -1.17
VPS50-216ENST00000484954 NANOS1Q8WY41 292 aaKnown RBP7.72□□□□□ -1.17
VPS50-216ENST00000484954 BPHLQ86WA6 291 aaPredicted RBP7.71□□□□□ -1.18
VPS50-216ENST00000484954 KANK3Q6NY19 840 aa7.7□□□□□ -1.18
VPS50-216ENST00000484954 VASH1Q7L8A9 365 aaPredicted RBP7.7□□□□□ -1.18
VPS50-216ENST00000484954 KRTAP9-9Q9BYP9 154 aa7.7□□□□□ -1.18
VPS50-216ENST00000484954 KRTAP9-4Q9BYQ2 154 aa7.7□□□□□ -1.18
VPS50-216ENST00000484954 SLURP2P0DP57 97 aa7.69□□□□□ -1.18
VPS50-216ENST00000484954 FOXK2Q01167 660 aa7.69□□□□□ -1.18
VPS50-216ENST00000484954 CBLBQ13191 982 aa7.69□□□□□ -1.18
VPS50-216ENST00000484954 LCE3BQ5TA77 95 aa7.69□□□□□ -1.18
VPS50-216ENST00000484954 SH3BP5LQ7L8J4 393 aa7.69□□□□□ -1.18
VPS50-216ENST00000484954 SH3RF1Q7Z6J0 888 aa7.69□□□□□ -1.18
VPS50-216ENST00000484954 ADAM23O75077 832 aa7.68□□□□□ -1.18
VPS50-216ENST00000484954 SV2AQ7L0J3 742 aa7.68□□□□□ -1.18
VPS50-216ENST00000484954 CCDC116Q8IYX3 515 aa7.68□□□□□ -1.18
VPS50-216ENST00000484954 SCARF2Q96GP6 870 aaPredicted RBP7.68□□□□□ -1.18
VPS50-216ENST00000484954 EMILIN1Q9Y6C2 1016 aa7.68□□□□□ -1.18
VPS50-216ENST00000484954 SLC35F4A4IF30 521 aa7.67□□□□□ -1.18
VPS50-216ENST00000484954 ITGA6P23229 1130 aa7.67□□□□□ -1.18
VPS50-216ENST00000484954 LYPD4Q6UWN0 246 aa7.67□□□□□ -1.18
VPS50-216ENST00000484954 KRTAP4-12Q9BQ66 201 aa7.67□□□□□ -1.18
VPS50-216ENST00000484954 OCSTAMPQ9BR26 566 aa7.67□□□□□ -1.18
VPS50-216ENST00000484954 C1QTNF2Q9BXJ5 285 aa7.67□□□□□ -1.18
VPS50-216ENST00000484954 CARD14Q9BXL6 1004 aa7.67□□□□□ -1.18
VPS50-216ENST00000484954 TRIM34Q9BYJ4 488 aa7.67□□□□□ -1.18
VPS50-216ENST00000484954 FKBPLQ9UIM3 349 aa7.67□□□□□ -1.18
VPS50-216ENST00000484954 MAGEB6P1A0A0J9YX57 407 aa7.66□□□□□ -1.18
VPS50-216ENST00000484954 NBPF14Q5TI25 921 aa7.66□□□□□ -1.18
VPS50-216ENST00000484954 ARMC2Q8NEN0 867 aa7.66□□□□□ -1.18
VPS50-216ENST00000484954 ADAMTS2O95450 1211 aa7.65□□□□□ -1.18
VPS50-216ENST00000484954 SPINT1O43278 529 aa7.64□□□□□ -1.19
VPS50-216ENST00000484954 GJD4Q96KN9 370 aaPredicted RBP7.64□□□□□ -1.19
VPS50-216ENST00000484954 MSTNO14793 375 aa7.63□□□□□ -1.19
VPS50-216ENST00000484954 CTSOP43234 321 aaPredicted RBP7.63□□□□□ -1.19
VPS50-216ENST00000484954 MAP3K10Q02779 954 aa7.63□□□□□ -1.19
VPS50-216ENST00000484954 ERFEQ4G0M1 354 aa7.63□□□□□ -1.19
VPS50-216ENST00000484954 TMEM259Q4ZIN3 620 aa7.63□□□□□ -1.19
VPS50-216ENST00000484954 PPP1R26Q5T8A7 1209 aaPredicted RBP7.63□□□□□ -1.19
VPS50-216ENST00000484954 PDXDC2PQ6P474 469 aa7.63□□□□□ -1.19
VPS50-216ENST00000484954 AGBL1Q96MI9 1066 aa7.63□□□□□ -1.19
VPS50-216ENST00000484954 MAP4K5Q9Y4K4 846 aa7.63□□□□□ -1.19
VPS50-216ENST00000484954 KRTAP4-8A0A0G2JLE6 195 aa7.62□□□□□ -1.19
VPS50-216ENST00000484954 PLA2G4EQ3MJ16 856 aa7.62□□□□□ -1.19
VPS50-216ENST00000484954 GPKOWQ92917 476 aaPredicted RBP eCLIP7.62□□□□□ -1.19
VPS50-216ENST00000484954 ARHGAP9Q9BRR9 750 aa7.62□□□□□ -1.19
VPS50-216ENST00000484954 SNRKQ9NRH2 765 aa7.62□□□□□ -1.19
VPS50-216ENST00000484954 PGPEP1Q9NXJ5 209 aa7.62□□□□□ -1.19
VPS50-216ENST00000484954 CELA2BP08218 269 aaPredicted RBP7.61□□□□□ -1.19
VPS50-216ENST00000484954 RELBQ01201 579 aa7.61□□□□□ -1.19
VPS50-216ENST00000484954 Q6ZVU0 165 aa7.61□□□□□ -1.19
VPS50-216ENST00000484954 TRMT44Q8IYL2 757 aaKnown RBP7.61□□□□□ -1.19
VPS50-216ENST00000484954 MTMR14Q8NCE2 650 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms