RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 GPKOWQ92917 476 aaPredicted RBP eCLIP8.5□□□□□ -1.05
VPS13A-211ENST00000484581 C1QTNF2Q9BXJ5 285 aa8.5□□□□□ -1.05
VPS13A-211ENST00000484581 SOBPA7XYQ1 873 aa8.49□□□□□ -1.05
VPS13A-211ENST00000484581 FSHRP23945 695 aa8.49□□□□□ -1.05
VPS13A-211ENST00000484581 SH3RF1Q7Z6J0 888 aa8.49□□□□□ -1.05
VPS13A-211ENST00000484581 CARD14Q9BXL6 1004 aa8.49□□□□□ -1.05
VPS13A-211ENST00000484581 MAP4K5Q9Y4K4 846 aa8.49□□□□□ -1.05
VPS13A-211ENST00000484581 VSIG8P0DPA2 414 aa8.48□□□□□ -1.05
VPS13A-211ENST00000484581 SKIV2LQ15477 1246 aaKnown RBP8.48□□□□□ -1.05
VPS13A-211ENST00000484581 TRMT44Q8IYL2 757 aaKnown RBP8.48□□□□□ -1.05
VPS13A-211ENST00000484581 DDRGK1Q96HY6 314 aa8.48□□□□□ -1.05
VPS13A-211ENST00000484581 EMILIN1Q9Y6C2 1016 aa8.47□□□□□ -1.05
VPS13A-211ENST00000484581 CCDC116Q8IYX3 515 aa8.46□□□□□ -1.06
VPS13A-211ENST00000484581 LINC00528Q8N1L1 170 aa8.46□□□□□ -1.06
VPS13A-211ENST00000484581 ARHGAP9Q9BRR9 750 aa8.46□□□□□ -1.06
VPS13A-211ENST00000484581 FAM117AQ9C073 453 aa8.46□□□□□ -1.06
VPS13A-211ENST00000484581 KCNMA1Q12791 1236 aa8.45□□□□□ -1.06
VPS13A-211ENST00000484581 PDXDC2PQ6P474 469 aa8.45□□□□□ -1.06
VPS13A-211ENST00000484581 MEIOBQ8N635 442 aa8.45□□□□□ -1.06
VPS13A-211ENST00000484581 TSEN34Q9BSV6 310 aaKnown RBP8.45□□□□□ -1.06
VPS13A-211ENST00000484581 FKBPLQ9UIM3 349 aa8.45□□□□□ -1.06
VPS13A-211ENST00000484581 GSK3AP49840 483 aa8.44□□□□□ -1.06
VPS13A-211ENST00000484581 ERFEQ4G0M1 354 aa8.44□□□□□ -1.06
VPS13A-211ENST00000484581 SH3D19Q5HYK7 790 aa8.44□□□□□ -1.06
VPS13A-211ENST00000484581 ZBTB33Q86T24 672 aa8.44□□□□□ -1.06
VPS13A-211ENST00000484581 KCTD17Q8N5Z5 321 aa8.44□□□□□ -1.06
VPS13A-211ENST00000484581 PROCA1Q8NCQ7 364 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-211ENST00000484581 LRRN4Q8WUT4 740 aa8.44□□□□□ -1.06
VPS13A-211ENST00000484581 PGPEP1Q9NXJ5 209 aa8.44□□□□□ -1.06
VPS13A-211ENST00000484581 CDV3Q9UKY7 258 aaKnown RBP8.43□□□□□ -1.06
VPS13A-211ENST00000484581 AP1G2O75843 785 aa8.42□□□□□ -1.06
VPS13A-211ENST00000484581 PTK2Q05397 1052 aa8.42□□□□□ -1.06
VPS13A-211ENST00000484581 NR6A1Q15406 480 aa8.42□□□□□ -1.06
VPS13A-211ENST00000484581 SLC10A4Q96EP9 437 aa8.42□□□□□ -1.06
VPS13A-211ENST00000484581 SOS2Q07890 1332 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-211ENST00000484581 ZC3H4Q9UPT8 1303 aaKnown RBP8.41□□□□□ -1.06
VPS13A-211ENST00000484581 PPP1R26Q5T8A7 1209 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-211ENST00000484581 PNMA1Q8ND90 353 aa8.41□□□□□ -1.06
VPS13A-211ENST00000484581 KCTD15Q96SI1 283 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-211ENST00000484581 DHX9Q08211 1270 aaKnown RBP8.4□□□□□ -1.06
VPS13A-211ENST00000484581 PPP2R2DQ66LE6 453 aa8.4□□□□□ -1.06
VPS13A-211ENST00000484581 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS13A-211ENST00000484581 TTLL8A6PVC2 850 aa8.39□□□□□ -1.07
VPS13A-211ENST00000484581 PPFIA3O75145 1194 aa8.39□□□□□ -1.07
VPS13A-211ENST00000484581 FLIIQ13045 1269 aa8.39□□□□□ -1.07
VPS13A-211ENST00000484581 GOPCQ9HD26 462 aa8.39□□□□□ -1.07
VPS13A-211ENST00000484581 CBLBQ13191 982 aa8.38□□□□□ -1.07
VPS13A-211ENST00000484581 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.38□□□□□ -1.07
VPS13A-211ENST00000484581 DNMT3LQ9UJW3 386 aa8.38□□□□□ -1.07
VPS13A-211ENST00000484581 GPSM3Q9Y4H4 160 aa8.38□□□□□ -1.07
VPS13A-211ENST00000484581 FIGNL2A6NMB9 653 aa8.37□□□□□ -1.07
VPS13A-211ENST00000484581 UBTFP17480 764 aaKnown RBP8.37□□□□□ -1.07
VPS13A-211ENST00000484581 FBXO31Q5XUX0 539 aaPredicted RBP8.37□□□□□ -1.07
VPS13A-211ENST00000484581 Q6ZVU0 165 aa8.36□□□□□ -1.07
VPS13A-211ENST00000484581 TMEM151AQ8N4L1 468 aa8.36□□□□□ -1.07
VPS13A-211ENST00000484581 ADAM32Q8TC27 787 aa8.35□□□□□ -1.07
VPS13A-211ENST00000484581 SPINT1O43278 529 aa8.34□□□□□ -1.07
VPS13A-211ENST00000484581 GDF11O95390 407 aa8.34□□□□□ -1.07
VPS13A-211ENST00000484581 RASSF7Q02833 373 aa8.34□□□□□ -1.07
VPS13A-211ENST00000484581 NBPF20Q3BBV1 942 aa8.34□□□□□ -1.07
VPS13A-211ENST00000484581 INTS6LQ5JSJ4 861 aaKnown RBP8.34□□□□□ -1.07
VPS13A-211ENST00000484581 PTSQ03393 145 aa8.33□□□□□ -1.08
VPS13A-211ENST00000484581 DZIP3Q86Y13 1208 aaKnown RBP8.33□□□□□ -1.08
VPS13A-211ENST00000484581 USP17L8P0C7I0 530 aa8.32□□□□□ -1.08
VPS13A-211ENST00000484581 RAB15P59190 212 aa8.32□□□□□ -1.08
VPS13A-211ENST00000484581 RELBQ01201 579 aa8.32□□□□□ -1.08
VPS13A-211ENST00000484581 EPS8L1Q8TE68 723 aa8.32□□□□□ -1.08
VPS13A-211ENST00000484581 AGBL1Q96MI9 1066 aa8.32□□□□□ -1.08
VPS13A-211ENST00000484581 OCSTAMPQ9BR26 566 aa8.32□□□□□ -1.08
VPS13A-211ENST00000484581 C1orf115Q9H7X2 142 aa8.32□□□□□ -1.08
VPS13A-211ENST00000484581 RFC5P40937 340 aa8.31□□□□□ -1.08
VPS13A-211ENST00000484581 PCMTD1Q96MG8 357 aaPredicted RBP8.31□□□□□ -1.08
VPS13A-211ENST00000484581 HMX1Q9NP08 348 aaPredicted RBP8.31□□□□□ -1.08
VPS13A-211ENST00000484581 PODXL2Q9NZ53 605 aa8.31□□□□□ -1.08
VPS13A-211ENST00000484581 RNF225M0QZC1 329 aaPredicted RBP8.3□□□□□ -1.08
VPS13A-211ENST00000484581 KRT76Q01546 638 aa8.3□□□□□ -1.08
VPS13A-211ENST00000484581 TRIM52Q96A61 297 aa8.3□□□□□ -1.08
VPS13A-211ENST00000484581 POLMQ9NP87 494 aaPredicted RBP8.3□□□□□ -1.08
VPS13A-211ENST00000484581 TMEM259Q4ZIN3 620 aa8.29□□□□□ -1.08
VPS13A-211ENST00000484581 CCDC155Q8N6L0 562 aa8.29□□□□□ -1.08
VPS13A-211ENST00000484581 INSM2Q96T92 566 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-211ENST00000484581 ZNF395Q9H8N7 513 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-211ENST00000484581 TMPRSS4Q9NRS4 437 aa8.29□□□□□ -1.08
VPS13A-211ENST00000484581 ADAMTS8Q9UP79 889 aa8.29□□□□□ -1.08
VPS13A-211ENST00000484581 CTSOP43234 321 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-211ENST00000484581 ARID3AQ99856 593 aa8.28□□□□□ -1.08
VPS13A-211ENST00000484581 A6NJR5 290 aa8.27□□□□□ -1.09
VPS13A-211ENST00000484581 ERVH48-1M5A8F1 160 aa8.27□□□□□ -1.09
VPS13A-211ENST00000484581 GPR161Q8N6U8 529 aaKnown RBP8.27□□□□□ -1.09
VPS13A-211ENST00000484581 ZNF784Q8NCA9 323 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-211ENST00000484581 CNTNAP3BQ96NU0 1288 aa8.27□□□□□ -1.09
VPS13A-211ENST00000484581 CNTNAP3Q9BZ76 1288 aa8.27□□□□□ -1.09
VPS13A-211ENST00000484581 SLC35F4A4IF30 521 aa8.26□□□□□ -1.09
VPS13A-211ENST00000484581 NANOS1Q8WY41 292 aaKnown RBP8.26□□□□□ -1.09
VPS13A-211ENST00000484581 APBB1O00213 710 aa8.25□□□□□ -1.09
VPS13A-211ENST00000484581 ADH1AP07327 375 aa8.25□□□□□ -1.09
VPS13A-211ENST00000484581 COL25A1Q9BXS0 654 aaPredicted RBP8.25□□□□□ -1.09
VPS13A-211ENST00000484581 CDC14CA4D256 554 aa8.24□□□□□ -1.09
VPS13A-211ENST00000484581 ARID3CA6NKF2 412 aa8.24□□□□□ -1.09
VPS13A-211ENST00000484581 ADD1P35611 737 aaKnown RBP8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms