RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 KIF24Q5T7B8 1368 aa16.47■□□□□ 0.23
SDC1-206ENST00000482879 LRP6O75581 1613 aa16.46■□□□□ 0.23
SDC1-206ENST00000482879 HSP90AB2PQ58FF8 381 aa16.46■□□□□ 0.23
SDC1-206ENST00000482879 MEX3CQ5U5Q3 659 aaKnown RBP16.46■□□□□ 0.23
SDC1-206ENST00000482879 ILDR1Q86SU0 546 aaPredicted RBP16.46■□□□□ 0.23
SDC1-206ENST00000482879 RTL1A6NKG5 1358 aa16.46■□□□□ 0.23
SDC1-206ENST00000482879 COL14A1Q05707 1796 aaKnown RBP16.46■□□□□ 0.22
SDC1-206ENST00000482879 AXIN2Q9Y2T1 843 aa16.45■□□□□ 0.22
SDC1-206ENST00000482879 CDK12Q9NYV4 1490 aaPredicted RBP16.45■□□□□ 0.22
SDC1-206ENST00000482879 CCDC184Q52MB2 194 aa16.44■□□□□ 0.22
SDC1-206ENST00000482879 LTV1Q96GA3 475 aaPredicted RBP16.44■□□□□ 0.22
SDC1-206ENST00000482879 INSRP06213 1382 aa16.43■□□□□ 0.22
SDC1-206ENST00000482879 NGLY1Q96IV0 654 aa16.43■□□□□ 0.22
SDC1-206ENST00000482879 C8orf37Q96NL8 207 aa16.43■□□□□ 0.22
SDC1-206ENST00000482879 MRS2Q9HD23 443 aa16.43■□□□□ 0.22
SDC1-206ENST00000482879 ABCC6O95255 1503 aa16.43■□□□□ 0.22
SDC1-206ENST00000482879 LMO7Q8WWI1 1683 aa16.43■□□□□ 0.22
SDC1-206ENST00000482879 CCER2I3L3R5 266 aa16.42■□□□□ 0.22
SDC1-206ENST00000482879 DIAPH1O60610 1272 aaKnown RBP16.42■□□□□ 0.22
SDC1-206ENST00000482879 BTG4Q9NY30 223 aa16.42■□□□□ 0.22
SDC1-206ENST00000482879 CAMTA1Q9Y6Y1 1673 aa16.42■□□□□ 0.22
SDC1-206ENST00000482879 BLMP54132 1417 aaPredicted RBP16.42■□□□□ 0.22
SDC1-206ENST00000482879 PLCH1Q4KWH8 1693 aa16.41■□□□□ 0.22
SDC1-206ENST00000482879 EVA1CP58658 441 aa16.41■□□□□ 0.22
SDC1-206ENST00000482879 EIF4A2Q14240 407 aaKnown RBP16.41■□□□□ 0.22
SDC1-206ENST00000482879 ANKRD24Q8TF21 1146 aa16.41■□□□□ 0.22
SDC1-206ENST00000482879 CSB-PGBD3P0DP91 1061 aa16.4■□□□□ 0.22
SDC1-206ENST00000482879 COL3A1P02461 1466 aaPredicted RBP16.4■□□□□ 0.22
SDC1-206ENST00000482879 NWD2Q9ULI1 1742 aa16.39■□□□□ 0.21
SDC1-206ENST00000482879 RGPD2P0DJD1 1756 aa16.39■□□□□ 0.21
SDC1-206ENST00000482879 IL13P35225 146 aa16.39■□□□□ 0.21
SDC1-206ENST00000482879 STRN4Q9NRL3 753 aa16.39■□□□□ 0.21
SDC1-206ENST00000482879 NUDCQ9Y266 331 aa16.39■□□□□ 0.21
SDC1-206ENST00000482879 SLIT2O94813 1529 aa16.38■□□□□ 0.21
SDC1-206ENST00000482879 ERBB3P21860 1342 aa16.38■□□□□ 0.21
SDC1-206ENST00000482879 COL5A2P05997 1499 aaPredicted RBP16.37■□□□□ 0.21
SDC1-206ENST00000482879 U2SURPO15042 1029 aaKnown RBP16.37■□□□□ 0.21
SDC1-206ENST00000482879 FNBP4Q8N3X1 1017 aaPredicted RBP16.37■□□□□ 0.21
SDC1-206ENST00000482879 EYA1Q99502 592 aa16.36■□□□□ 0.21
SDC1-206ENST00000482879 NLRP2Q9NX02 1062 aa16.36■□□□□ 0.21
SDC1-206ENST00000482879 AFF2P51816 1311 aa16.36■□□□□ 0.21
SDC1-206ENST00000482879 NRAPQ86VF7 1730 aa16.36■□□□□ 0.21
SDC1-206ENST00000482879 FAM208AQ9UK61 1670 aaKnown RBP16.35■□□□□ 0.21
SDC1-206ENST00000482879 WDR43Q15061 677 aaKnown RBP eCLIP16.35■□□□□ 0.21
SDC1-206ENST00000482879 LARP1Q6PKG0 1096 aaKnown RBP16.35■□□□□ 0.21
SDC1-206ENST00000482879 TOM1L2Q6ZVM7 507 aa16.35■□□□□ 0.21
SDC1-206ENST00000482879 UNC5CLQ8IV45 518 aa16.35■□□□□ 0.21
SDC1-206ENST00000482879 USP21Q9UK80 565 aa16.35■□□□□ 0.21
SDC1-206ENST00000482879 WDR17Q8IZU2 1322 aa16.35■□□□□ 0.21
SDC1-206ENST00000482879 U2AF1L5P0DN76 240 aaPredicted RBP16.34■□□□□ 0.21
SDC1-206ENST00000482879 U2AF1Q01081 240 aaKnown RBP eCLIP16.34■□□□□ 0.21
SDC1-206ENST00000482879 NBPF6Q5VWK0 638 aa16.34■□□□□ 0.21
SDC1-206ENST00000482879 PNISRQ8TF01 805 aaKnown RBP16.34■□□□□ 0.21
SDC1-206ENST00000482879 NBPF4Q96M43 638 aa16.34■□□□□ 0.21
SDC1-206ENST00000482879 BCL9LQ86UU0 1499 aa16.33■□□□□ 0.2
SDC1-206ENST00000482879 RGPD1P0DJD0 1748 aa16.32■□□□□ 0.2
SDC1-206ENST00000482879 USHBP1Q8N6Y0 703 aa16.32■□□□□ 0.2
SDC1-206ENST00000482879 CARD10Q9BWT7 1032 aa16.32■□□□□ 0.2
SDC1-206ENST00000482879 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.32■□□□□ 0.2
SDC1-206ENST00000482879 CCDC9Q9Y3X0 531 aaKnown RBP16.32■□□□□ 0.2
SDC1-206ENST00000482879 CRB1P82279 1406 aa16.31■□□□□ 0.2
SDC1-206ENST00000482879 IGSF1Q8N6C5 1336 aa16.31■□□□□ 0.2
SDC1-206ENST00000482879 HMOX1P09601 288 aa16.31■□□□□ 0.2
SDC1-206ENST00000482879 SULT6B1Q6IMI4 303 aa16.31■□□□□ 0.2
SDC1-206ENST00000482879 FAM9BQ8IZU0 186 aa16.31■□□□□ 0.2
SDC1-206ENST00000482879 VPS72Q15906 364 aa16.3■□□□□ 0.2
SDC1-206ENST00000482879 USP35Q9P2H5 1018 aa16.3■□□□□ 0.2
SDC1-206ENST00000482879 ADAMTS8Q9UP79 889 aa16.3■□□□□ 0.2
SDC1-206ENST00000482879 AEBP1Q8IUX7 1158 aa16.29■□□□□ 0.2
SDC1-206ENST00000482879 SPATA31A5Q5VU36 1347 aa16.28■□□□□ 0.2
SDC1-206ENST00000482879 SPATA31A7Q8IWB4 1347 aa16.28■□□□□ 0.2
SDC1-206ENST00000482879 FCHSD2O94868 740 aa16.28■□□□□ 0.2
SDC1-206ENST00000482879 ZNF772Q68DY9 489 aaPredicted RBP16.28■□□□□ 0.2
SDC1-206ENST00000482879 QTRT2Q9H974 415 aaKnown RBP16.28■□□□□ 0.2
SDC1-206ENST00000482879 TRPC5Q9UL62 973 aaPredicted RBP16.28■□□□□ 0.2
SDC1-206ENST00000482879 SPATA31A1Q5TZJ5 1347 aa16.27■□□□□ 0.2
SDC1-206ENST00000482879 TCP11L2Q8N4U5 519 aa16.27■□□□□ 0.2
SDC1-206ENST00000482879 PHF23Q9BUL5 403 aaPredicted RBP16.27■□□□□ 0.2
SDC1-206ENST00000482879 RSPH6AQ9H0K4 717 aa16.26■□□□□ 0.19
SDC1-206ENST00000482879 PNNQ9H307 717 aaKnown RBP16.26■□□□□ 0.19
SDC1-206ENST00000482879 ATRNO75882 1429 aa16.26■□□□□ 0.19
SDC1-206ENST00000482879 NCAPD2Q15021 1401 aa16.26■□□□□ 0.19
SDC1-206ENST00000482879 KDRP35968 1356 aa16.26■□□□□ 0.19
SDC1-206ENST00000482879 PRKAR2BP31323 418 aa16.25■□□□□ 0.19
SDC1-206ENST00000482879 RAPGEF4Q8WZA2 1011 aa16.25■□□□□ 0.19
SDC1-206ENST00000482879 THRAP3Q9Y2W1 955 aaKnown RBP16.25■□□□□ 0.19
SDC1-206ENST00000482879 TATP17735 454 aaPredicted RBP16.24■□□□□ 0.19
SDC1-206ENST00000482879 CCDC146Q8IYE0 955 aa16.24■□□□□ 0.19
SDC1-206ENST00000482879 GJD4Q96KN9 370 aaPredicted RBP16.24■□□□□ 0.19
SDC1-206ENST00000482879 NEFMP07197 916 aa16.23■□□□□ 0.19
SDC1-206ENST00000482879 IL2RBP14784 551 aa16.23■□□□□ 0.19
SDC1-206ENST00000482879 WNK3Q9BYP7 1800 aa16.22■□□□□ 0.19
SDC1-206ENST00000482879 BARGINQ6ZT62 677 aa16.22■□□□□ 0.19
SDC1-206ENST00000482879 RUNDC1Q96C34 613 aa16.22■□□□□ 0.19
SDC1-206ENST00000482879 PLEKHF1Q96S99 279 aa16.22■□□□□ 0.19
SDC1-206ENST00000482879 RGS17Q9UGC6 210 aaPredicted RBP16.22■□□□□ 0.19
SDC1-206ENST00000482879 FAM98CQ17RN3 349 aaKnown RBP16.21■□□□□ 0.19
SDC1-206ENST00000482879 PHACTR3Q96KR7 559 aa16.21■□□□□ 0.19
SDC1-206ENST00000482879 PARP4Q9UKK3 1724 aaKnown RBP16.21■□□□□ 0.19
SDC1-206ENST00000482879 GLI3P10071 1580 aa16.21■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms