RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 CRYBG1Q9Y4K1 1723 aa11.03□□□□□ -0.64
SYNE1-225ENST00000481502 IL13P35225 146 aa11.02□□□□□ -0.65
SYNE1-225ENST00000481502 CNGB1Q14028 1251 aaPredicted RBP11.02□□□□□ -0.65
SYNE1-225ENST00000481502 RRS1Q15050 365 aaKnown RBP11.02□□□□□ -0.65
SYNE1-225ENST00000481502 FCHSD2O94868 740 aa11.01□□□□□ -0.65
SYNE1-225ENST00000481502 KCNA4P22459 653 aa11.01□□□□□ -0.65
SYNE1-225ENST00000481502 HSPA1LP34931 641 aa11.01□□□□□ -0.65
SYNE1-225ENST00000481502 WDR43Q15061 677 aaKnown RBP eCLIP11.01□□□□□ -0.65
SYNE1-225ENST00000481502 PRDM11Q9NQV5 511 aa11.01□□□□□ -0.65
SYNE1-225ENST00000481502 COL3A1P02461 1466 aaPredicted RBP11□□□□□ -0.65
SYNE1-225ENST00000481502 ZC3H6P61129 1189 aaKnown RBP11□□□□□ -0.65
SYNE1-225ENST00000481502 HSP90AB2PQ58FF8 381 aa11□□□□□ -0.65
SYNE1-225ENST00000481502 CABLES1Q8TDN4 633 aa11□□□□□ -0.65
SYNE1-225ENST00000481502 KIAA0232Q92628 1395 aa11□□□□□ -0.65
SYNE1-225ENST00000481502 PPM1GO15355 546 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-225ENST00000481502 FBLN1P23142 703 aa10.99□□□□□ -0.65
SYNE1-225ENST00000481502 SOX12O15370 315 aa10.98□□□□□ -0.65
SYNE1-225ENST00000481502 EIF4A2Q14240 407 aaKnown RBP10.98□□□□□ -0.65
SYNE1-225ENST00000481502 CCDC184Q52MB2 194 aa10.98□□□□□ -0.65
SYNE1-225ENST00000481502 ERBB3P21860 1342 aa10.98□□□□□ -0.65
SYNE1-225ENST00000481502 KDRP35968 1356 aa10.98□□□□□ -0.65
SYNE1-225ENST00000481502 ABCA3Q99758 1704 aa10.98□□□□□ -0.65
SYNE1-225ENST00000481502 FAM83GA6ND36 823 aa10.97□□□□□ -0.65
SYNE1-225ENST00000481502 DCAF8L1A6NGE4 600 aa10.97□□□□□ -0.65
SYNE1-225ENST00000481502 NEFMP07197 916 aa10.97□□□□□ -0.65
SYNE1-225ENST00000481502 ADAMTS8Q9UP79 889 aa10.97□□□□□ -0.65
SYNE1-225ENST00000481502 IGSF1Q8N6C5 1336 aa10.97□□□□□ -0.65
SYNE1-225ENST00000481502 NCAPD2Q15021 1401 aa10.97□□□□□ -0.65
SYNE1-225ENST00000481502 LTN1O94822 1766 aa10.97□□□□□ -0.65
SYNE1-225ENST00000481502 COL18A1P39060 1754 aa10.97□□□□□ -0.65
SYNE1-225ENST00000481502 COL14A1Q05707 1796 aaKnown RBP10.96□□□□□ -0.65
SYNE1-225ENST00000481502 PEAK1Q9H792 1746 aa10.96□□□□□ -0.65
SYNE1-225ENST00000481502 WDR17Q8IZU2 1322 aa10.96□□□□□ -0.65
SYNE1-225ENST00000481502 U2AF1L5P0DN76 240 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-225ENST00000481502 U2AF1Q01081 240 aaKnown RBP eCLIP10.96□□□□□ -0.65
SYNE1-225ENST00000481502 FNBP4Q8N3X1 1017 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-225ENST00000481502 ANKRD24Q8TF21 1146 aa10.96□□□□□ -0.65
SYNE1-225ENST00000481502 AXIN2Q9Y2T1 843 aa10.96□□□□□ -0.65
SYNE1-225ENST00000481502 LMO7Q8WWI1 1683 aa10.95□□□□□ -0.66
SYNE1-225ENST00000481502 FAM9BQ8IZU0 186 aa10.95□□□□□ -0.66
SYNE1-225ENST00000481502 RUNDC1Q96C34 613 aa10.95□□□□□ -0.66
SYNE1-225ENST00000481502 EYA1Q99502 592 aa10.95□□□□□ -0.66
SYNE1-225ENST00000481502 CARD10Q9BWT7 1032 aa10.95□□□□□ -0.66
SYNE1-225ENST00000481502 FAM208AQ9UK61 1670 aaKnown RBP10.95□□□□□ -0.66
SYNE1-225ENST00000481502 SLIT2O94813 1529 aa10.94□□□□□ -0.66
SYNE1-225ENST00000481502 U2SURPO15042 1029 aaKnown RBP10.94□□□□□ -0.66
SYNE1-225ENST00000481502 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.94□□□□□ -0.66
SYNE1-225ENST00000481502 THRAP3Q9Y2W1 955 aaKnown RBP10.94□□□□□ -0.66
SYNE1-225ENST00000481502 COL5A2P05997 1499 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-225ENST00000481502 CAMTA1Q9Y6Y1 1673 aa10.93□□□□□ -0.66
SYNE1-225ENST00000481502 HOXD11P31277 338 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-225ENST00000481502 EVA1CP58658 441 aa10.93□□□□□ -0.66
SYNE1-225ENST00000481502 AMOTQ4VCS5 1084 aa10.93□□□□□ -0.66
SYNE1-225ENST00000481502 PLEKHF1Q96S99 279 aa10.93□□□□□ -0.66
SYNE1-225ENST00000481502 CDCA7Q9BWT1 371 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-225ENST00000481502 RSPH6AQ9H0K4 717 aa10.93□□□□□ -0.66
SYNE1-225ENST00000481502 CRB1P82279 1406 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 RGPD1P0DJD0 1748 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 NWD2Q9ULI1 1742 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 NPM3O75607 178 aaKnown RBP10.92□□□□□ -0.66
SYNE1-225ENST00000481502 CHRNA2Q15822 529 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 CCDC27Q2M243 656 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 NBPF6Q5VWK0 638 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 SULT6B1Q6IMI4 303 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 UNC5CLQ8IV45 518 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 NBPF4Q96M43 638 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 RNF216Q9NWF9 866 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-225ENST00000481502 BTG4Q9NY30 223 aa10.92□□□□□ -0.66
SYNE1-225ENST00000481502 NUTM2BA6NNL0 878 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-225ENST00000481502 NUTM2EB1AL46 878 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-225ENST00000481502 CSB-PGBD3P0DP91 1061 aa10.91□□□□□ -0.66
SYNE1-225ENST00000481502 NUTM2AQ8IVF1 878 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-225ENST00000481502 NGLY1Q96IV0 654 aa10.91□□□□□ -0.66
SYNE1-225ENST00000481502 MAPK8IP3Q9UPT6 1336 aa10.9□□□□□ -0.66
SYNE1-225ENST00000481502 ZBTB7CA1YPR0 619 aa10.9□□□□□ -0.66
SYNE1-225ENST00000481502 HTATSF1O43719 755 aaKnown RBP10.9□□□□□ -0.66
SYNE1-225ENST00000481502 ADAMTS2O95450 1211 aa10.9□□□□□ -0.66
SYNE1-225ENST00000481502 VPS72Q15906 364 aa10.9□□□□□ -0.66
SYNE1-225ENST00000481502 TOM1L2Q6ZVM7 507 aa10.9□□□□□ -0.66
SYNE1-225ENST00000481502 GAS2L2Q8NHY3 880 aa10.9□□□□□ -0.66
SYNE1-225ENST00000481502 NLRP2Q9NX02 1062 aa10.9□□□□□ -0.66
SYNE1-225ENST00000481502 PRKAR2BP31323 418 aa10.89□□□□□ -0.67
SYNE1-225ENST00000481502 LMOD3Q0VAK6 560 aa10.89□□□□□ -0.67
SYNE1-225ENST00000481502 PLEKHO1Q53GL0 409 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-225ENST00000481502 BARGINQ6ZT62 677 aa10.89□□□□□ -0.67
SYNE1-225ENST00000481502 RAPGEF4Q8WZA2 1011 aa10.89□□□□□ -0.67
SYNE1-225ENST00000481502 LTV1Q96GA3 475 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-225ENST00000481502 LRP6O75581 1613 aa10.88□□□□□ -0.67
SYNE1-225ENST00000481502 PLEKHG5O94827 1062 aa10.88□□□□□ -0.67
SYNE1-225ENST00000481502 TATP17735 454 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-225ENST00000481502 PDE3BQ13370 1112 aa10.88□□□□□ -0.67
SYNE1-225ENST00000481502 MEX3CQ5U5Q3 659 aaKnown RBP10.88□□□□□ -0.67
SYNE1-225ENST00000481502 TCP11L2Q8N4U5 519 aa10.88□□□□□ -0.67
SYNE1-225ENST00000481502 BCL9LQ86UU0 1499 aa10.87□□□□□ -0.67
SYNE1-225ENST00000481502 SPATA31A5Q5VU36 1347 aa10.87□□□□□ -0.67
SYNE1-225ENST00000481502 ZBED9Q6R2W3 1325 aa10.87□□□□□ -0.67
SYNE1-225ENST00000481502 SPATA31A7Q8IWB4 1347 aa10.87□□□□□ -0.67
SYNE1-225ENST00000481502 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.87□□□□□ -0.67
SYNE1-225ENST00000481502 HMOX1P09601 288 aa10.87□□□□□ -0.67
SYNE1-225ENST00000481502 IL2RBP14784 551 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms