RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 EDC4Q6P2E9 1401 aaKnown RBP17.17■□□□□ 0.34
SQSTM1-207ENST00000481335 WDR17Q8IZU2 1322 aa17.17■□□□□ 0.34
SQSTM1-207ENST00000481335 ARHGEF25Q86VW2 580 aa17.16■□□□□ 0.34
SQSTM1-207ENST00000481335 RGPD3A6NKT7 1758 aaPredicted RBP17.15■□□□□ 0.34
SQSTM1-207ENST00000481335 LTN1O94822 1766 aa17.15■□□□□ 0.34
SQSTM1-207ENST00000481335 RGPD4Q7Z3J3 1758 aa17.15■□□□□ 0.34
SQSTM1-207ENST00000481335 HDGFL2Q7Z4V5 671 aaPredicted RBP17.15■□□□□ 0.34
SQSTM1-207ENST00000481335 CDCA7Q9BWT1 371 aaPredicted RBP17.15■□□□□ 0.34
SQSTM1-207ENST00000481335 RREB1Q92766 1687 aa17.15■□□□□ 0.34
SQSTM1-207ENST00000481335 PEAK1Q9H792 1746 aa17.15■□□□□ 0.34
SQSTM1-207ENST00000481335 TERF2IPQ9NYB0 399 aa17.14■□□□□ 0.33
SQSTM1-207ENST00000481335 SBF2Q86WG5 1849 aa17.14■□□□□ 0.33
SQSTM1-207ENST00000481335 OVOS2A0A0G2JMS6 1433 aa17.13■□□□□ 0.33
SQSTM1-207ENST00000481335 OVOS2A0A0J9YW53 1432 aa17.13■□□□□ 0.33
SQSTM1-207ENST00000481335 OVOS2Q6IE36 1432 aa17.13■□□□□ 0.33
SQSTM1-207ENST00000481335 FAM182BQ5T319 152 aa17.13■□□□□ 0.33
SQSTM1-207ENST00000481335 EN1Q05925 392 aaPredicted RBP17.12■□□□□ 0.33
SQSTM1-207ENST00000481335 TOM1L2Q6ZVM7 507 aa17.12■□□□□ 0.33
SQSTM1-207ENST00000481335 CLSPNQ9HAW4 1339 aa17.12■□□□□ 0.33
SQSTM1-207ENST00000481335 A0A1W2PP64 1363 aa17.12■□□□□ 0.33
SQSTM1-207ENST00000481335 BCL9O00512 1426 aa17.12■□□□□ 0.33
SQSTM1-207ENST00000481335 ZBTB7CA1YPR0 619 aa17.11■□□□□ 0.33
SQSTM1-207ENST00000481335 TRIM37O94972 964 aa17.11■□□□□ 0.33
SQSTM1-207ENST00000481335 TESK2Q96S53 571 aa17.11■□□□□ 0.33
SQSTM1-207ENST00000481335 TIMELESSQ9UNS1 1208 aa17.11■□□□□ 0.33
SQSTM1-207ENST00000481335 CCDC7Q96M83 1385 aa17.11■□□□□ 0.33
SQSTM1-207ENST00000481335 TMC1Q8TDI8 760 aa17.1■□□□□ 0.33
SQSTM1-207ENST00000481335 CARD10Q9BWT7 1032 aa17.1■□□□□ 0.33
SQSTM1-207ENST00000481335 AXIN2Q9Y2T1 843 aa17.1■□□□□ 0.33
SQSTM1-207ENST00000481335 FAM208AQ9UK61 1670 aaKnown RBP17.1■□□□□ 0.33
SQSTM1-207ENST00000481335 NUP188Q5SRE5 1749 aa17.1■□□□□ 0.33
SQSTM1-207ENST00000481335 DDB1Q16531 1140 aa17.09■□□□□ 0.33
SQSTM1-207ENST00000481335 CAMKK2Q96RR4 588 aa17.09■□□□□ 0.33
SQSTM1-207ENST00000481335 ST20-MTHFSA0A0A6YYL1 179 aa17.08■□□□□ 0.32
SQSTM1-207ENST00000481335 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.08■□□□□ 0.32
SQSTM1-207ENST00000481335 SLC12A5Q9H2X9 1139 aa17.08■□□□□ 0.32
SQSTM1-207ENST00000481335 APBA3O96018 575 aa17.07■□□□□ 0.32
SQSTM1-207ENST00000481335 USP47Q96K76 1375 aa17.06■□□□□ 0.32
SQSTM1-207ENST00000481335 ERBB3P21860 1342 aa17.06■□□□□ 0.32
SQSTM1-207ENST00000481335 CSB-PGBD3P0DP91 1061 aa17.06■□□□□ 0.32
SQSTM1-207ENST00000481335 EZH2Q15910 746 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-207ENST00000481335 NME9Q86XW9 330 aa17.06■□□□□ 0.32
SQSTM1-207ENST00000481335 TNS2Q63HR2 1409 aa17.05■□□□□ 0.32
SQSTM1-207ENST00000481335 ANKRD36BQ8N2N9 1353 aa17.05■□□□□ 0.32
SQSTM1-207ENST00000481335 SOX12O15370 315 aa17.05■□□□□ 0.32
SQSTM1-207ENST00000481335 TMF1P82094 1093 aa17.04■□□□□ 0.32
SQSTM1-207ENST00000481335 CDCA8Q53HL2 280 aa17.03■□□□□ 0.32
SQSTM1-207ENST00000481335 PLSCR1O15162 318 aa17.02■□□□□ 0.32
SQSTM1-207ENST00000481335 PSDA5PKW4 1024 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-207ENST00000481335 BCL11BQ9C0K0 894 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-207ENST00000481335 KIF20BQ96Q89 1820 aa17■□□□□ 0.31
SQSTM1-207ENST00000481335 EXOC5O00471 708 aa17■□□□□ 0.31
SQSTM1-207ENST00000481335 NBPF14Q5TI25 921 aa17■□□□□ 0.31
SQSTM1-207ENST00000481335 NHSQ6T4R5 1651 aa17■□□□□ 0.31
SQSTM1-207ENST00000481335 R3HDM1Q15032 1099 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-207ENST00000481335 MARCH10Q8NA82 808 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-207ENST00000481335 COG3Q96JB2 828 aa16.99■□□□□ 0.31
SQSTM1-207ENST00000481335 RTL1A6NKG5 1358 aa16.99■□□□□ 0.31
SQSTM1-207ENST00000481335 IP6K1Q92551 441 aa16.98■□□□□ 0.31
SQSTM1-207ENST00000481335 MYOM1P52179 1685 aa16.97■□□□□ 0.31
SQSTM1-207ENST00000481335 IL2RBP14784 551 aa16.97■□□□□ 0.31
SQSTM1-207ENST00000481335 ANKRD24Q8TF21 1146 aa16.97■□□□□ 0.31
SQSTM1-207ENST00000481335 NLRP2Q9NX02 1062 aa16.96■□□□□ 0.31
SQSTM1-207ENST00000481335 KIF24Q5T7B8 1368 aa16.93■□□□□ 0.3
SQSTM1-207ENST00000481335 MAP3K19Q56UN5 1328 aa16.93■□□□□ 0.3
SQSTM1-207ENST00000481335 KAT6BQ8WYB5 2073 aa16.92■□□□□ 0.3
SQSTM1-207ENST00000481335 FYB1O15117 783 aa16.91■□□□□ 0.3
SQSTM1-207ENST00000481335 HOXC9P31274 260 aa16.91■□□□□ 0.3
SQSTM1-207ENST00000481335 CASZ1Q86V15 1759 aa16.91■□□□□ 0.3
SQSTM1-207ENST00000481335 BTAF1O14981 1849 aa16.91■□□□□ 0.3
SQSTM1-207ENST00000481335 RGPD2P0DJD1 1756 aa16.9■□□□□ 0.3
SQSTM1-207ENST00000481335 SMG6Q86US8 1419 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-207ENST00000481335 AMPHP49418 695 aa16.9■□□□□ 0.3
SQSTM1-207ENST00000481335 ANKRD26Q9UPS8 1709 aa16.89■□□□□ 0.29
SQSTM1-207ENST00000481335 SHANK3Q9BYB0 1731 aa16.88■□□□□ 0.29
SQSTM1-207ENST00000481335 CGNL1Q0VF96 1302 aa16.88■□□□□ 0.29
SQSTM1-207ENST00000481335 PCGF6Q9BYE7 350 aa16.87■□□□□ 0.29
SQSTM1-207ENST00000481335 GGNBP2Q9H3C7 697 aa16.87■□□□□ 0.29
SQSTM1-207ENST00000481335 FLT4P35916 1363 aa16.87■□□□□ 0.29
SQSTM1-207ENST00000481335 PAPPAQ13219 1627 aa16.86■□□□□ 0.29
SQSTM1-207ENST00000481335 TXNRD1Q16881 649 aa16.86■□□□□ 0.29
SQSTM1-207ENST00000481335 PTF1AQ7RTS3 328 aa16.86■□□□□ 0.29
SQSTM1-207ENST00000481335 SPON1Q9HCB6 807 aa16.86■□□□□ 0.29
SQSTM1-207ENST00000481335 INSRP06213 1382 aa16.86■□□□□ 0.29
SQSTM1-207ENST00000481335 NSD3Q9BZ95 1437 aa16.86■□□□□ 0.29
SQSTM1-207ENST00000481335 PROM2Q8N271 834 aa16.85■□□□□ 0.29
SQSTM1-207ENST00000481335 DOT1LQ8TEK3 1739 aa16.84■□□□□ 0.29
SQSTM1-207ENST00000481335 KCNQ2O43526 872 aa16.84■□□□□ 0.29
SQSTM1-207ENST00000481335 LTV1Q96GA3 475 aaPredicted RBP16.84■□□□□ 0.29
SQSTM1-207ENST00000481335 ANO8Q9HCE9 1232 aaPredicted RBP16.84■□□□□ 0.29
SQSTM1-207ENST00000481335 QSER1Q2KHR3 1735 aa16.84■□□□□ 0.29
SQSTM1-207ENST00000481335 MEGF6O75095 1541 aa16.83■□□□□ 0.28
SQSTM1-207ENST00000481335 RRS1Q15050 365 aaKnown RBP16.83■□□□□ 0.28
SQSTM1-207ENST00000481335 MAP2P11137 1827 aaKnown RBP16.82■□□□□ 0.28
SQSTM1-207ENST00000481335 STK32BQ9NY57 414 aa16.82■□□□□ 0.28
SQSTM1-207ENST00000481335 LY75O60449 1722 aa16.82■□□□□ 0.28
SQSTM1-207ENST00000481335 EIF4G2P78344 907 aaKnown RBP eCLIP16.81■□□□□ 0.28
SQSTM1-207ENST00000481335 ACSBG1Q96GR2 724 aa16.81■□□□□ 0.28
SQSTM1-207ENST00000481335 CARD14Q9BXL6 1004 aa16.81■□□□□ 0.28
SQSTM1-207ENST00000481335 NCAPD2Q15021 1401 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms