RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 BMP2P12643 396 aa10.74□□□□□ -0.69
VPS50-215ENST00000480943 NANOS1Q8WY41 292 aaKnown RBP10.74□□□□□ -0.69
VPS50-215ENST00000480943 CLASP1Q7Z460 1538 aa10.74□□□□□ -0.69
VPS50-215ENST00000480943 K7ELQ4 463 aaPredicted RBP10.73□□□□□ -0.69
VPS50-215ENST00000480943 PHF20L1A8MW92 1017 aa10.72□□□□□ -0.69
VPS50-215ENST00000480943 MAP3K10Q02779 954 aa10.72□□□□□ -0.69
VPS50-215ENST00000480943 ZC3H15Q8WU90 426 aaKnown RBP10.72□□□□□ -0.69
VPS50-215ENST00000480943 KLF16Q9BXK1 252 aaPredicted RBP10.72□□□□□ -0.69
VPS50-215ENST00000480943 SYNJ2O15056 1496 aa10.72□□□□□ -0.69
VPS50-215ENST00000480943 ADAMTS12P58397 1594 aa10.72□□□□□ -0.69
VPS50-215ENST00000480943 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.71□□□□□ -0.69
VPS50-215ENST00000480943 ZMYND10O75800 440 aa10.7□□□□□ -0.7
VPS50-215ENST00000480943 ZIC2O95409 532 aaPredicted RBP10.7□□□□□ -0.7
VPS50-215ENST00000480943 KRI1Q8N9T8 703 aaKnown RBP10.7□□□□□ -0.7
VPS50-215ENST00000480943 WHAMMQ8TF30 809 aa10.7□□□□□ -0.7
VPS50-215ENST00000480943 ENAMQ9NRM1 1142 aa10.7□□□□□ -0.7
VPS50-215ENST00000480943 CCNYL3P0C7X3 344 aa10.69□□□□□ -0.7
VPS50-215ENST00000480943 BARGINQ6ZT62 677 aa10.69□□□□□ -0.7
VPS50-215ENST00000480943 SOS2Q07890 1332 aaPredicted RBP10.68□□□□□ -0.7
VPS50-215ENST00000480943 CD46P15529 392 aa10.68□□□□□ -0.7
VPS50-215ENST00000480943 MDM2Q00987 491 aaPredicted RBP10.68□□□□□ -0.7
VPS50-215ENST00000480943 LINC00528Q8N1L1 170 aa10.68□□□□□ -0.7
VPS50-215ENST00000480943 CHMP7Q8WUX9 453 aaPredicted RBP10.68□□□□□ -0.7
VPS50-215ENST00000480943 DNMT3LQ9UJW3 386 aa10.68□□□□□ -0.7
VPS50-215ENST00000480943 RETREG3Q86VR2 466 aa10.67□□□□□ -0.7
VPS50-215ENST00000480943 FAM174AQ8TBP5 190 aa10.67□□□□□ -0.7
VPS50-215ENST00000480943 UNC93B1Q9H1C4 597 aa10.67□□□□□ -0.7
VPS50-215ENST00000480943 ARAP1Q96P48 1450 aa10.67□□□□□ -0.7
VPS50-215ENST00000480943 RNFT1Q5M7Z0 435 aa10.66□□□□□ -0.7
VPS50-215ENST00000480943 DCAF5Q96JK2 942 aa10.66□□□□□ -0.7
VPS50-215ENST00000480943 ERICH3Q5RHP9 1530 aa10.66□□□□□ -0.7
VPS50-215ENST00000480943 MS4A1P11836 297 aa10.65□□□□□ -0.7
VPS50-215ENST00000480943 LINC01559Q495D7 138 aa10.65□□□□□ -0.7
VPS50-215ENST00000480943 ZNF511Q8NB15 262 aa10.65□□□□□ -0.7
VPS50-215ENST00000480943 BCANQ96GW7 911 aa10.65□□□□□ -0.7
VPS50-215ENST00000480943 GRIN2AQ12879 1464 aa10.65□□□□□ -0.7
VPS50-215ENST00000480943 CEP170Q5SW79 1584 aa10.65□□□□□ -0.71
VPS50-215ENST00000480943 SPTLC1O15269 473 aa10.64□□□□□ -0.71
VPS50-215ENST00000480943 BAP1Q92560 729 aa10.64□□□□□ -0.71
VPS50-215ENST00000480943 ITPKCQ96DU7 683 aa10.64□□□□□ -0.71
VPS50-215ENST00000480943 ZFAND3Q9H8U3 227 aa10.64□□□□□ -0.71
VPS50-215ENST00000480943 HOXA2O43364 376 aa10.63□□□□□ -0.71
VPS50-215ENST00000480943 PROCP04070 461 aa10.63□□□□□ -0.71
VPS50-215ENST00000480943 CLCN1P35523 988 aa10.63□□□□□ -0.71
VPS50-215ENST00000480943 PTSQ03393 145 aa10.63□□□□□ -0.71
VPS50-215ENST00000480943 NR5A1Q13285 461 aa10.63□□□□□ -0.71
VPS50-215ENST00000480943 GPCPD1Q9NPB8 672 aa10.63□□□□□ -0.71
VPS50-215ENST00000480943 MEIOBQ8N635 442 aa10.62□□□□□ -0.71
VPS50-215ENST00000480943 FHAD1B1AJZ9 1412 aa10.61□□□□□ -0.71
VPS50-215ENST00000480943 PTPRNQ16849 979 aa10.61□□□□□ -0.71
VPS50-215ENST00000480943 SV2AQ7L0J3 742 aa10.61□□□□□ -0.71
VPS50-215ENST00000480943 PODNQ7Z5L7 613 aa10.61□□□□□ -0.71
VPS50-215ENST00000480943 CDK15Q96Q40 435 aa10.61□□□□□ -0.71
VPS50-215ENST00000480943 SHROOM2Q13796 1616 aa10.6□□□□□ -0.71
VPS50-215ENST00000480943 CYB5RLQ6IPT4 315 aa10.6□□□□□ -0.71
VPS50-215ENST00000480943 HLA-CQ95604 372 aa10.6□□□□□ -0.71
VPS50-215ENST00000480943 TSEN34Q9BSV6 310 aaKnown RBP10.6□□□□□ -0.71
VPS50-215ENST00000480943 EVA1BQ9NVM1 165 aa10.6□□□□□ -0.71
VPS50-215ENST00000480943 CUL7Q14999 1698 aa10.6□□□□□ -0.71
VPS50-215ENST00000480943 LCE3BQ5TA77 95 aa10.59□□□□□ -0.71
VPS50-215ENST00000480943 CCDC155Q8N6L0 562 aa10.59□□□□□ -0.71
VPS50-215ENST00000480943 BEND7Q8N7W2 519 aaPredicted RBP10.59□□□□□ -0.71
VPS50-215ENST00000480943 ERCC6L2Q5T890 1561 aa10.59□□□□□ -0.71
VPS50-215ENST00000480943 TTLL8A6PVC2 850 aa10.58□□□□□ -0.72
VPS50-215ENST00000480943 ADAMTS2O95450 1211 aa10.58□□□□□ -0.72
VPS50-215ENST00000480943 TTLL12Q14166 644 aaPredicted RBP10.58□□□□□ -0.72
VPS50-215ENST00000480943 RUSC2Q8N2Y8 1516 aa10.58□□□□□ -0.72
VPS50-215ENST00000480943 NUP160Q12769 1436 aa10.58□□□□□ -0.72
VPS50-215ENST00000480943 KCNH2Q12809 1159 aa10.57□□□□□ -0.72
VPS50-215ENST00000480943 ARID5BQ14865 1188 aa10.57□□□□□ -0.72
VPS50-215ENST00000480943 FAM217BQ9NTX9 383 aaPredicted RBP10.57□□□□□ -0.72
VPS50-215ENST00000480943 CDC14CA4D256 554 aa10.56□□□□□ -0.72
VPS50-215ENST00000480943 SRSF11Q05519 484 aaKnown RBP10.56□□□□□ -0.72
VPS50-215ENST00000480943 AMHR2Q16671 573 aa10.56□□□□□ -0.72
VPS50-215ENST00000480943 LYPD4Q6UWN0 246 aa10.56□□□□□ -0.72
VPS50-215ENST00000480943 SYMPKQ92797 1274 aaKnown RBP10.56□□□□□ -0.72
VPS50-215ENST00000480943 BTBD11A6QL63 1104 aa10.55□□□□□ -0.72
VPS50-215ENST00000480943 VWA5B2Q8N398 1253 aa10.55□□□□□ -0.72
VPS50-215ENST00000480943 ITGB2P05107 769 aa10.54□□□□□ -0.72
VPS50-215ENST00000480943 ITGA6P23229 1130 aa10.54□□□□□ -0.72
VPS50-215ENST00000480943 AK7Q96M32 723 aa10.54□□□□□ -0.72
VPS50-215ENST00000480943 KIF27Q86VH2 1401 aa10.53□□□□□ -0.72
VPS50-215ENST00000480943 CELA2BP08218 269 aaPredicted RBP10.53□□□□□ -0.72
VPS50-215ENST00000480943 TRIM66O15016 1216 aa10.52□□□□□ -0.73
VPS50-215ENST00000480943 BAG6P46379 1132 aa10.52□□□□□ -0.73
VPS50-215ENST00000480943 GUCA2AQ02747 115 aa10.51□□□□□ -0.73
VPS50-215ENST00000480943 GIGYF2Q6Y7W6 1299 aaKnown RBP10.51□□□□□ -0.73
VPS50-215ENST00000480943 SLC35F4A4IF30 521 aa10.5□□□□□ -0.73
VPS50-215ENST00000480943 NR3C2P08235 984 aa10.5□□□□□ -0.73
VPS50-215ENST00000480943 SSTR3P32745 418 aaPredicted RBP10.5□□□□□ -0.73
VPS50-215ENST00000480943 SLC24A3Q9HC58 644 aa10.5□□□□□ -0.73
VPS50-215ENST00000480943 CNTNAP5Q8WYK1 1306 aa10.5□□□□□ -0.73
VPS50-215ENST00000480943 C6orf229H3BNL8 230 aa10.49□□□□□ -0.73
VPS50-215ENST00000480943 NUTM1Q86Y26 1132 aa10.48□□□□□ -0.73
VPS50-215ENST00000480943 PARP9Q8IXQ6 854 aa10.48□□□□□ -0.73
VPS50-215ENST00000480943 IGF1RP08069 1367 aa10.48□□□□□ -0.73
VPS50-215ENST00000480943 FIGNL2A6NMB9 653 aa10.47□□□□□ -0.73
VPS50-215ENST00000480943 PRG4Q92954 1404 aaPredicted RBP10.47□□□□□ -0.73
VPS50-215ENST00000480943 NEDD1Q8NHV4 660 aa10.46□□□□□ -0.73
VPS50-215ENST00000480943 CTTNBP2Q8WZ74 1663 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms