RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 CETN1Q12798 172 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 PPP4R3BQ5MIZ7 849 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 ITPRIPQ8IWB1 547 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 RPGRIP1Q96KN7 1286 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 C16orf45Q96MC5 204 aaPredicted RBP6.35□□□□□ -1.39
USF3-202ENST00000478658 EIF2AQ9BY44 585 aaKnown RBP6.35□□□□□ -1.39
USF3-202ENST00000478658 USP37Q86T82 979 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 AFAP1L2Q8N4X5 818 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 GOLGA6CA6NDK9 693 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 GOLGA6BA6NDN3 693 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 MGEA5O60502 916 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 GOLGA6DP0CG33 693 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 GTF2F1P35269 517 aaKnown RBP eCLIP6.35□□□□□ -1.39
USF3-202ENST00000478658 CCDC57Q2TAC2 916 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 TTC5Q8N0Z6 440 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 GOLGA6AQ9NYA3 693 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 PHLDB2Q86SQ0 1253 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 PAIP2Q9BPZ3 127 aaKnown RBP6.35□□□□□ -1.39
USF3-202ENST00000478658 LRRCC1Q9C099 1032 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 MAP7D1Q3KQU3 841 aa6.34□□□□□ -1.39
USF3-202ENST00000478658 SEPT14Q6ZU15 432 aa6.34□□□□□ -1.39
USF3-202ENST00000478658 FRAT1Q92837 279 aaPredicted RBP6.34□□□□□ -1.39
USF3-202ENST00000478658 B4DLN1 442 aa6.34□□□□□ -1.39
USF3-202ENST00000478658 MRPL12P52815 198 aaKnown RBP6.34□□□□□ -1.39
USF3-202ENST00000478658 GBP6Q6ZN66 633 aa6.34□□□□□ -1.39
USF3-202ENST00000478658 ZC3H15Q8WU90 426 aaKnown RBP6.34□□□□□ -1.39
USF3-202ENST00000478658 SCAPERQ9BY12 1400 aa6.34□□□□□ -1.39
USF3-202ENST00000478658 DAPK3O43293 454 aa6.34□□□□□ -1.39
USF3-202ENST00000478658 DNAJC21Q5F1R6 531 aaKnown RBP6.34□□□□□ -1.39
USF3-202ENST00000478658 CCDC77Q9BR77 488 aa6.34□□□□□ -1.39
USF3-202ENST00000478658 ZNF396Q96N95 335 aaPredicted RBP6.34□□□□□ -1.39
USF3-202ENST00000478658 RIOK3O14730 519 aaKnown RBP6.34□□□□□ -1.39
USF3-202ENST00000478658 IFIT2P09913 472 aaKnown RBP6.34□□□□□ -1.4
USF3-202ENST00000478658 TRAF1Q13077 416 aa6.34□□□□□ -1.4
USF3-202ENST00000478658 IKQ13123 557 aaPredicted RBP6.34□□□□□ -1.4
USF3-202ENST00000478658 SEC62Q99442 399 aaKnown RBP6.34□□□□□ -1.4
USF3-202ENST00000478658 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.34□□□□□ -1.4
USF3-202ENST00000478658 EVA1CP58658 441 aa6.34□□□□□ -1.4
USF3-202ENST00000478658 STXBP4Q6ZWJ1 553 aa6.34□□□□□ -1.4
USF3-202ENST00000478658 SDCCAG8Q86SQ7 713 aaPredicted RBP6.34□□□□□ -1.4
USF3-202ENST00000478658 IL27Q8NEV9 243 aa6.34□□□□□ -1.4
USF3-202ENST00000478658 MIPOL1Q8TD10 442 aa6.34□□□□□ -1.4
USF3-202ENST00000478658 TAF4BQ92750 862 aa6.34□□□□□ -1.4
USF3-202ENST00000478658 SALL2Q9Y467 1007 aaPredicted RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 IKBKGQ9Y6K9 419 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 POTEB2H3BUK9 544 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 ZFYP08048 801 aaPredicted RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 ALDH3A1P30838 453 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 RBM28Q9NW13 759 aaKnown RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 BZW2Q9Y6E2 419 aaKnown RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 TUBB4BP68371 445 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 MORC1Q86VD1 984 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 HVCN1Q96D96 273 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 TBC1D2BQ9UPU7 963 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 FSD2A1L4K1 749 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 NUCB2P80303 420 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 SMARCC1Q92922 1105 aaPredicted RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 CDKL5O76039 1030 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 CCDC83Q8IWF9 413 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 TRIML1Q8N9V2 468 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 DDX27Q96GQ7 796 aaKnown RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 PYM1Q9BRP8 204 aaKnown RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 NAA15Q9BXJ9 866 aaKnown RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 NSRP1Q9H0G5 558 aaKnown RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 CENPHQ9H3R5 247 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 BAZ1AQ9NRL2 1556 aaPredicted RBP6.33□□□□□ -1.4
USF3-202ENST00000478658 ACTN2P35609 894 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 CCDC158Q5M9N0 1113 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 UBXN4Q92575 508 aa6.33□□□□□ -1.4
USF3-202ENST00000478658 DNAJC8O75937 253 aaPredicted RBP6.32□□□□□ -1.4
USF3-202ENST00000478658 SATB1Q01826 763 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 JAKMIP2Q96AA8 810 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 TTC14Q96N46 770 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 PRPHP41219 470 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 MCM2P49736 904 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 IFI16Q16666 785 aaKnown RBP6.32□□□□□ -1.4
USF3-202ENST00000478658 MCTP1Q6DN14 999 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 CACNA2D3Q8IZS8 1091 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 RAD21O60216 631 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 CCDC50Q8IVM0 306 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 RRBP1Q9P2E9 1410 aaKnown RBP6.32□□□□□ -1.4
USF3-202ENST00000478658 RFX1P22670 979 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 CFAP45Q9UL16 551 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 KDM2AQ9Y2K7 1162 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 PDE3BQ13370 1112 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 TAF7Q15545 349 aaPredicted RBP6.32□□□□□ -1.4
USF3-202ENST00000478658 FEZ2Q9UHY8 353 aaPredicted RBP6.32□□□□□ -1.4
USF3-202ENST00000478658 MATR3P43243 847 aaKnown RBP eCLIP6.32□□□□□ -1.4
USF3-202ENST00000478658 ATRIPQ8WXE1 791 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 KHDRBS2Q5VWX1 349 aaKnown RBP6.32□□□□□ -1.4
USF3-202ENST00000478658 PPFIBP1Q86W92 1011 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 CERS3Q8IU89 383 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 RAB34Q9BZG1 259 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 ZMYND15Q9H091 742 aa6.32□□□□□ -1.4
USF3-202ENST00000478658 CFAP36Q96G28 342 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 MSH5O43196 834 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 TRPC3Q13507 836 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 MSANTD4Q8NCY6 345 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 RAI14Q9P0K7 980 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 RNF8O76064 485 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms