RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 PURBQ96QR8 312 aaKnown RBP10.47□□□□□ -0.73
VPS50-213ENST00000477572 KCTD15Q96SI1 283 aaPredicted RBP10.47□□□□□ -0.73
VPS50-213ENST00000477572 C6orf118Q5T5N4 469 aa10.46□□□□□ -0.73
VPS50-213ENST00000477572 MRPL14Q6P1L8 145 aaKnown RBP10.46□□□□□ -0.73
VPS50-213ENST00000477572 CCDC116Q8IYX3 515 aa10.46□□□□□ -0.73
VPS50-213ENST00000477572 MTMR14Q8NCE2 650 aa10.45□□□□□ -0.74
VPS50-213ENST00000477572 KIFC2Q96AC6 838 aa10.45□□□□□ -0.74
VPS50-213ENST00000477572 GPSM3Q9Y4H4 160 aa10.45□□□□□ -0.74
VPS50-213ENST00000477572 PPP1R26Q5T8A7 1209 aaPredicted RBP10.44□□□□□ -0.74
VPS50-213ENST00000477572 SCARF1Q14162 830 aa10.43□□□□□ -0.74
VPS50-213ENST00000477572 DZIP3Q86Y13 1208 aaKnown RBP10.43□□□□□ -0.74
VPS50-213ENST00000477572 BANK1Q8NDB2 785 aa10.43□□□□□ -0.74
VPS50-213ENST00000477572 SOBPA7XYQ1 873 aa10.42□□□□□ -0.74
VPS50-213ENST00000477572 CBLBQ13191 982 aa10.42□□□□□ -0.74
VPS50-213ENST00000477572 INTS6LQ5JSJ4 861 aaKnown RBP10.42□□□□□ -0.74
VPS50-213ENST00000477572 EMILIN1Q9Y6C2 1016 aa10.42□□□□□ -0.74
VPS50-213ENST00000477572 FBXO45P0C2W1 286 aa10.41□□□□□ -0.74
VPS50-213ENST00000477572 PCDHB9Q9Y5E1 797 aa10.4□□□□□ -0.74
VPS50-213ENST00000477572 ZBBXA8MT70 800 aa10.39□□□□□ -0.75
VPS50-213ENST00000477572 BMP2P12643 396 aa10.39□□□□□ -0.75
VPS50-213ENST00000477572 MEIOBQ8N635 442 aa10.39□□□□□ -0.75
VPS50-213ENST00000477572 CDV3Q9UKY7 258 aaKnown RBP10.39□□□□□ -0.75
VPS50-213ENST00000477572 TREML4Q6UXN2 200 aa10.38□□□□□ -0.75
VPS50-213ENST00000477572 TMPRSS4Q9NRS4 437 aa10.38□□□□□ -0.75
VPS50-213ENST00000477572 PGPEP1Q9NXJ5 209 aa10.38□□□□□ -0.75
VPS50-213ENST00000477572 GPR37L1O60883 481 aa10.37□□□□□ -0.75
VPS50-213ENST00000477572 UPP2O95045 317 aa10.37□□□□□ -0.75
VPS50-213ENST00000477572 NBPF20Q3BBV1 942 aa10.37□□□□□ -0.75
VPS50-213ENST00000477572 LINC00528Q8N1L1 170 aa10.37□□□□□ -0.75
VPS50-213ENST00000477572 VEGFBP49765 207 aa10.36□□□□□ -0.75
VPS50-213ENST00000477572 AGBL1Q96MI9 1066 aa10.36□□□□□ -0.75
VPS50-213ENST00000477572 NDUFB9Q9Y6M9 179 aa10.36□□□□□ -0.75
VPS50-213ENST00000477572 WFS1O76024 890 aa10.35□□□□□ -0.75
VPS50-213ENST00000477572 DHX9Q08211 1270 aaKnown RBP10.35□□□□□ -0.75
VPS50-213ENST00000477572 ERVH48-1M5A8F1 160 aa10.34□□□□□ -0.75
VPS50-213ENST00000477572 TERTO14746 1132 aaKnown RBP10.34□□□□□ -0.75
VPS50-213ENST00000477572 GIGYF1O75420 1035 aaPredicted RBP10.34□□□□□ -0.75
VPS50-213ENST00000477572 NFX1Q12986 1120 aaKnown RBP10.34□□□□□ -0.75
VPS50-213ENST00000477572 TBC1D2BQ9UPU7 963 aa10.34□□□□□ -0.75
VPS50-213ENST00000477572 MAN1A2O60476 641 aa10.33□□□□□ -0.76
VPS50-213ENST00000477572 ZNF784Q8NCA9 323 aaPredicted RBP10.33□□□□□ -0.76
VPS50-213ENST00000477572 TSEN34Q9BSV6 310 aaKnown RBP10.33□□□□□ -0.76
VPS50-213ENST00000477572 RELBQ01201 579 aa10.32□□□□□ -0.76
VPS50-213ENST00000477572 NR1H3Q13133 447 aa10.32□□□□□ -0.76
VPS50-213ENST00000477572 LCE2AQ5TA79 106 aaPredicted RBP10.32□□□□□ -0.76
VPS50-213ENST00000477572 ESPNB1AK53 854 aa10.31□□□□□ -0.76
VPS50-213ENST00000477572 LCE2CQ5TA81 110 aa10.31□□□□□ -0.76
VPS50-213ENST00000477572 Q6ZVU0 165 aa10.31□□□□□ -0.76
VPS50-213ENST00000477572 FIGNL2A6NMB9 653 aa10.3□□□□□ -0.76
VPS50-213ENST00000477572 APBB1O00213 710 aa10.3□□□□□ -0.76
VPS50-213ENST00000477572 ADD1P35611 737 aaKnown RBP10.3□□□□□ -0.76
VPS50-213ENST00000477572 ZNF395Q9H8N7 513 aaPredicted RBP10.3□□□□□ -0.76
VPS50-213ENST00000477572 CYLDQ9NQC7 956 aa10.3□□□□□ -0.76
VPS50-213ENST00000477572 NXF1Q9UBU9 619 aaKnown RBP10.3□□□□□ -0.76
VPS50-213ENST00000477572 DNMT3LQ9UJW3 386 aa10.29□□□□□ -0.76
VPS50-213ENST00000477572 SOCS7O14512 581 aa10.28□□□□□ -0.76
VPS50-213ENST00000477572 LILRA1O75019 489 aa10.28□□□□□ -0.76
VPS50-213ENST00000477572 GDPD2Q9HCC8 539 aa10.28□□□□□ -0.76
VPS50-213ENST00000477572 SOS2Q07890 1332 aaPredicted RBP10.28□□□□□ -0.76
VPS50-213ENST00000477572 INSM2Q96T92 566 aaPredicted RBP10.27□□□□□ -0.77
VPS50-213ENST00000477572 TTLL8A6PVC2 850 aa10.26□□□□□ -0.77
VPS50-213ENST00000477572 SPINT1O43278 529 aa10.25□□□□□ -0.77
VPS50-213ENST00000477572 ABL2P42684 1182 aa10.25□□□□□ -0.77
VPS50-213ENST00000477572 CTSOP43234 321 aaPredicted RBP10.25□□□□□ -0.77
VPS50-213ENST00000477572 IRF5Q13568 498 aa10.25□□□□□ -0.77
VPS50-213ENST00000477572 SEPT12Q8IYM1 358 aa10.25□□□□□ -0.77
VPS50-213ENST00000477572 ADH1AP07327 375 aa10.24□□□□□ -0.77
VPS50-213ENST00000477572 SLC16A10Q8TF71 515 aa10.24□□□□□ -0.77
VPS50-213ENST00000477572 ZNF330Q9Y3S2 320 aaPredicted RBP10.24□□□□□ -0.77
VPS50-213ENST00000477572 MCM6Q14566 821 aa10.23□□□□□ -0.77
VPS50-213ENST00000477572 KDF1Q8NAX2 398 aaPredicted RBP10.23□□□□□ -0.77
VPS50-213ENST00000477572 PRM3Q9NNZ6 103 aa10.23□□□□□ -0.77
VPS50-213ENST00000477572 POLMQ9NP87 494 aaPredicted RBP10.23□□□□□ -0.77
VPS50-213ENST00000477572 VAC14Q08AM6 782 aa10.22□□□□□ -0.77
VPS50-213ENST00000477572 PCDHB11Q9Y5F2 797 aa10.22□□□□□ -0.77
VPS50-213ENST00000477572 H3BM21 787 aa10.21□□□□□ -0.77
VPS50-213ENST00000477572 PTGIRP43119 386 aa10.21□□□□□ -0.77
VPS50-213ENST00000477572 ERBB4Q15303 1308 aa10.21□□□□□ -0.78
VPS50-213ENST00000477572 SCTRP47872 440 aa10.2□□□□□ -0.78
VPS50-213ENST00000477572 RNF20Q5VTR2 975 aa10.2□□□□□ -0.78
VPS50-213ENST00000477572 CEP126Q9P2H0 1117 aa10.2□□□□□ -0.78
VPS50-213ENST00000477572 GMPRP36959 345 aa10.19□□□□□ -0.78
VPS50-213ENST00000477572 MCCD1P59942 119 aaPredicted RBP10.19□□□□□ -0.78
VPS50-213ENST00000477572 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.19□□□□□ -0.78
VPS50-213ENST00000477572 PPFIA3O75145 1194 aa10.18□□□□□ -0.78
VPS50-213ENST00000477572 PTSQ03393 145 aa10.18□□□□□ -0.78
VPS50-213ENST00000477572 IRF7Q92985 503 aa10.18□□□□□ -0.78
VPS50-213ENST00000477572 TSGA10IPQ3SY00 556 aa10.17□□□□□ -0.78
VPS50-213ENST00000477572 CC2D2BQ6DHV5 1058 aa10.17□□□□□ -0.78
VPS50-213ENST00000477572 NPAS3Q8IXF0 933 aa10.17□□□□□ -0.78
VPS50-213ENST00000477572 CCDC85AQ96PX6 553 aaPredicted RBP10.17□□□□□ -0.78
VPS50-213ENST00000477572 CDCA7Q9BWT1 371 aaPredicted RBP10.17□□□□□ -0.78
VPS50-213ENST00000477572 ATP5J2-PTCD1G3V325 749 aa10.16□□□□□ -0.78
VPS50-213ENST00000477572 MEN1O00255 615 aa10.16□□□□□ -0.78
VPS50-213ENST00000477572 ERVK-9P63128 1117 aa10.16□□□□□ -0.78
VPS50-213ENST00000477572 EIF4G2P78344 907 aaKnown RBP eCLIP10.16□□□□□ -0.78
VPS50-213ENST00000477572 RNF217Q8TC41 542 aa10.16□□□□□ -0.78
VPS50-213ENST00000477572 ZNF592Q92610 1267 aa10.16□□□□□ -0.78
VPS50-213ENST00000477572 FOXD4L5Q5VV16 416 aaPredicted RBP10.15□□□□□ -0.78
VPS50-213ENST00000477572 POM121Q96HA1 1249 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms