RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SBF2Q86WG5 1849 aa17.47■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 APBA3O96018 575 aa17.47■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 PUS7Q96PZ0 661 aaKnown RBP17.47■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 USP31Q70CQ4 1352 aa17.47■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 KTN1Q86UP2 1357 aaKnown RBP17.47■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 C11orf95C9JLR9 678 aaPredicted RBP17.46■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 WNK3Q9BYP7 1800 aa17.45■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 LRRC37A3O60309 1634 aa17.45■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 ABCC6O95255 1503 aa17.44■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 R3HDM1Q15032 1099 aaKnown RBP17.44■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 CARD10Q9BWT7 1032 aa17.44■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 BCL9O00512 1426 aa17.44■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 TOM1L2Q6ZVM7 507 aa17.43■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 NUP188Q5SRE5 1749 aa17.43■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 OVOS2A0A0G2JMS6 1433 aa17.42■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 OVOS2A0A0J9YW53 1432 aa17.42■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 OVOS2Q6IE36 1432 aa17.42■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 ZBTB7CA1YPR0 619 aa17.42■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 TESK2Q96S53 571 aa17.42■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 SLC12A5Q9H2X9 1139 aa17.42■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 TONSLQ96HA7 1378 aa17.41■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 DDB1Q16531 1140 aa17.41■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 MARCH10Q8NA82 808 aaPredicted RBP17.41■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 CDCA7Q9BWT1 371 aaPredicted RBP17.41■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 PLSCR1O15162 318 aa17.4■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 RGPD3A6NKT7 1758 aaPredicted RBP17.4■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 RGPD4Q7Z3J3 1758 aa17.4■□□□□ 0.38
MSH5-SAPCD1-205ENST00000476085 NME9Q86XW9 330 aa17.39■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.39■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 EDC4Q6P2E9 1401 aaKnown RBP17.38■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 PTF1AQ7RTS3 328 aa17.38■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 BCL11BQ9C0K0 894 aaPredicted RBP17.38■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 SOX12O15370 315 aa17.37■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 LTN1O94822 1766 aa17.37■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 A0A1W2PP64 1363 aa17.37■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 CCDC7Q96M83 1385 aa17.37■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 ST20-MTHFSA0A0A6YYL1 179 aa17.36■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 HDGFL2Q7Z4V5 671 aaPredicted RBP17.36■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 TMC1Q8TDI8 760 aa17.36■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 TRIM26Q12899 539 aaPredicted RBP17.35■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 PROM2Q8N271 834 aa17.35■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 TERF2IPQ9NYB0 399 aa17.35■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 ERBB3P21860 1342 aa17.35■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 NBPF14Q5TI25 921 aa17.34■□□□□ 0.37
MSH5-SAPCD1-205ENST00000476085 NINLQ9Y2I6 1382 aa17.33■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 EXOC5O00471 708 aa17.33■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 SLC24A1O60721 1099 aa17.33■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 CSB-PGBD3P0DP91 1061 aa17.33■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 TNS2Q63HR2 1409 aa17.31■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 ANKRD24Q8TF21 1146 aa17.29■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 IP6K1Q92551 441 aa17.29■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 ANO8Q9HCE9 1232 aaPredicted RBP17.28■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 NLRP2Q9NX02 1062 aa17.28■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 KCNQ2O43526 872 aa17.27■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 IL2RBP14784 551 aa17.27■□□□□ 0.36
MSH5-SAPCD1-205ENST00000476085 CASZ1Q86V15 1759 aa17.27■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 NHSQ6T4R5 1651 aa17.26■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 ANKRD36BQ8N2N9 1353 aa17.26■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 KAT6BQ8WYB5 2073 aa17.25■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 FAM208AQ9UK61 1670 aaKnown RBP17.24■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 FBLN1P23142 703 aa17.24■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 TXNRD1Q16881 649 aa17.24■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 SPON1Q9HCB6 807 aa17.24■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 USP47Q96K76 1375 aa17.24■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 MAP3K19Q56UN5 1328 aa17.23■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 FYB1O15117 783 aa17.23■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 COG3Q96JB2 828 aa17.23■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 HOXC9P31274 260 aa17.22■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 PDGFDQ9GZP0 370 aaPredicted RBP17.22■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 RGPD2P0DJD1 1756 aa17.21■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 TMF1P82094 1093 aa17.21■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 TIMELESSQ9UNS1 1208 aa17.21■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 BTAF1O14981 1849 aa17.21■□□□□ 0.35
MSH5-SAPCD1-205ENST00000476085 SLC15A2Q16348 729 aa17.19■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 ACSBG1Q96GR2 724 aa17.19■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 PAPPAQ13219 1627 aa17.18■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 PTGER2P43116 358 aa17.18■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 SHANK3Q9BYB0 1731 aa17.18■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 RTL1A6NKG5 1358 aa17.17■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 CLSPNQ9HAW4 1339 aa17.17■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 AMPHP49418 695 aa17.16■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 LTV1Q96GA3 475 aaPredicted RBP17.16■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 CARD14Q9BXL6 1004 aa17.16■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 GGNBP2Q9H3C7 697 aa17.16■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 LRRC4BQ9NT99 713 aa17.16■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 RRS1Q15050 365 aaKnown RBP17.15■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 CDCA8Q53HL2 280 aa17.15■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 SGIP1Q9BQI5 828 aa17.15■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 STK32BQ9NY57 414 aa17.15■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 MYOM1P52179 1685 aa17.15■□□□□ 0.34
MSH5-SAPCD1-205ENST00000476085 NBPF6Q5VWK0 638 aa17.14■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 NBPF4Q96M43 638 aa17.14■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 KIF20BQ96Q89 1820 aa17.14■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 MEGF6O75095 1541 aa17.13■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 ZBTB7AO95365 584 aa17.13■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 DDX54Q8TDD1 881 aaKnown RBP17.13■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 KIF24Q5T7B8 1368 aa17.13■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 ZCRB1Q8TBF4 217 aaKnown RBP17.12■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 PPP1R1BQ9UD71 204 aaPredicted RBP17.12■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 NSD2O96028 1365 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms