RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 WWC3Q9ULE0 1092 aa7.5□□□□□ -1.21
USP4-209ENST00000475873 THRAP3Q9Y2W1 955 aaKnown RBP7.5□□□□□ -1.21
USP4-209ENST00000475873 PIK3C2GO75747 1445 aa7.5□□□□□ -1.21
USP4-209ENST00000475873 GPRASP1Q5JY77 1395 aa7.49□□□□□ -1.21
USP4-209ENST00000475873 C11orf95C9JLR9 678 aaPredicted RBP7.49□□□□□ -1.21
USP4-209ENST00000475873 EVA1CP58658 441 aa7.49□□□□□ -1.21
USP4-209ENST00000475873 SIRT1Q96EB6 747 aa7.49□□□□□ -1.21
USP4-209ENST00000475873 TNS2Q63HR2 1409 aa7.49□□□□□ -1.21
USP4-209ENST00000475873 QSER1Q2KHR3 1735 aa7.49□□□□□ -1.21
USP4-209ENST00000475873 ARHGEF28Q8N1W1 1705 aaKnown RBP7.49□□□□□ -1.21
USP4-209ENST00000475873 PNPLA7Q6ZV29 1317 aa7.49□□□□□ -1.21
USP4-209ENST00000475873 AKAP12Q02952 1782 aa7.48□□□□□ -1.21
USP4-209ENST00000475873 CPDO75976 1380 aa7.48□□□□□ -1.21
USP4-209ENST00000475873 PAK3O75914 559 aaPredicted RBP7.48□□□□□ -1.21
USP4-209ENST00000475873 CRB1P82279 1406 aa7.48□□□□□ -1.21
USP4-209ENST00000475873 AKT1S1Q96B36 256 aa7.48□□□□□ -1.21
USP4-209ENST00000475873 DDB1Q16531 1140 aa7.47□□□□□ -1.21
USP4-209ENST00000475873 PRAM1Q96QH2 718 aa7.47□□□□□ -1.21
USP4-209ENST00000475873 NHSQ6T4R5 1651 aa7.47□□□□□ -1.21
USP4-209ENST00000475873 TULP4Q9NRJ4 1543 aa7.47□□□□□ -1.21
USP4-209ENST00000475873 SPATA31E1Q6ZUB1 1445 aa7.46□□□□□ -1.21
USP4-209ENST00000475873 TOMM70O94826 608 aa7.46□□□□□ -1.22
USP4-209ENST00000475873 HIRIP3Q9BW71 556 aaPredicted RBP7.46□□□□□ -1.22
USP4-209ENST00000475873 USP19O94966 1318 aa7.46□□□□□ -1.22
USP4-209ENST00000475873 BTAF1O14981 1849 aa7.45□□□□□ -1.22
USP4-209ENST00000475873 HSPA1AP0DMV8 641 aaKnown RBP7.45□□□□□ -1.22
USP4-209ENST00000475873 HSPA1BP0DMV9 641 aaKnown RBP7.45□□□□□ -1.22
USP4-209ENST00000475873 SLC16A10Q8TF71 515 aa7.45□□□□□ -1.22
USP4-209ENST00000475873 NMRK2Q9NPI5 230 aa7.45□□□□□ -1.22
USP4-209ENST00000475873 COL18A1P39060 1754 aa7.45□□□□□ -1.22
USP4-209ENST00000475873 POLD1P28340 1107 aa7.44□□□□□ -1.22
USP4-209ENST00000475873 NGDNQ8NEJ9 315 aaKnown RBP7.44□□□□□ -1.22
USP4-209ENST00000475873 CICQ96RK0 1608 aaPredicted RBP7.43□□□□□ -1.22
USP4-209ENST00000475873 KCNQ4P56696 695 aa7.43□□□□□ -1.22
USP4-209ENST00000475873 FAM161AQ3B820 660 aa7.43□□□□□ -1.22
USP4-209ENST00000475873 ACSBG1Q96GR2 724 aa7.43□□□□□ -1.22
USP4-209ENST00000475873 RGL3Q3MIN7 710 aa7.42□□□□□ -1.22
USP4-209ENST00000475873 CFAP70Q5T0N1 1121 aa7.42□□□□□ -1.22
USP4-209ENST00000475873 C14orf93Q9H972 538 aaKnown RBP7.42□□□□□ -1.22
USP4-209ENST00000475873 AXIN2Q9Y2T1 843 aa7.42□□□□□ -1.22
USP4-209ENST00000475873 MINK1Q8N4C8 1332 aaPredicted RBP7.42□□□□□ -1.22
USP4-209ENST00000475873 GCP02774 474 aa7.41□□□□□ -1.22
USP4-209ENST00000475873 MSL1Q68DK7 614 aa7.41□□□□□ -1.22
USP4-209ENST00000475873 ANKRD30BQ9BXX2 1392 aa7.41□□□□□ -1.22
USP4-209ENST00000475873 USP6P35125 1406 aa7.41□□□□□ -1.22
USP4-209ENST00000475873 ADGRB1O14514 1584 aa7.41□□□□□ -1.22
USP4-209ENST00000475873 WASLO00401 505 aaPredicted RBP7.4□□□□□ -1.22
USP4-209ENST00000475873 RBM46Q8TBY0 533 aaKnown RBP7.4□□□□□ -1.22
USP4-209ENST00000475873 POLR3AO14802 1390 aaPredicted RBP7.4□□□□□ -1.22
USP4-209ENST00000475873 BRD4O60885 1362 aaPredicted RBP7.4□□□□□ -1.22
USP4-209ENST00000475873 RGPD5Q99666 1765 aa7.39□□□□□ -1.23
USP4-209ENST00000475873 QRICH2Q9H0J4 1663 aa7.39□□□□□ -1.23
USP4-209ENST00000475873 TRPM1Q7Z4N2 1603 aa7.39□□□□□ -1.23
USP4-209ENST00000475873 WDR17Q8IZU2 1322 aa7.39□□□□□ -1.23
USP4-209ENST00000475873 TOM1L2Q6ZVM7 507 aa7.39□□□□□ -1.23
USP4-209ENST00000475873 COL23A1Q86Y22 540 aaPredicted RBP7.39□□□□□ -1.23
USP4-209ENST00000475873 CD2APQ9Y5K6 639 aa7.39□□□□□ -1.23
USP4-209ENST00000475873 KAT6BQ8WYB5 2073 aa7.39□□□□□ -1.23
USP4-209ENST00000475873 ITSN1Q15811 1721 aa7.38□□□□□ -1.23
USP4-209ENST00000475873 ABCC6O95255 1503 aa7.38□□□□□ -1.23
USP4-209ENST00000475873 ACEP12821 1306 aa7.38□□□□□ -1.23
USP4-209ENST00000475873 IGSF1Q8N6C5 1336 aa7.38□□□□□ -1.23
USP4-209ENST00000475873 LOC105371045A0A1W2PR82 267 aa7.38□□□□□ -1.23
USP4-209ENST00000475873 ITGAEP38570 1179 aa7.38□□□□□ -1.23
USP4-209ENST00000475873 TFCP2L1Q9NZI6 479 aa7.38□□□□□ -1.23
USP4-209ENST00000475873 POGKQ9P215 609 aa7.38□□□□□ -1.23
USP4-209ENST00000475873 KIAA1210Q9ULL0 1709 aa7.38□□□□□ -1.23
USP4-209ENST00000475873 SLIT3O75094 1523 aa7.37□□□□□ -1.23
USP4-209ENST00000475873 EIF3AQ14152 1382 aaKnown RBP7.37□□□□□ -1.23
USP4-209ENST00000475873 PDE4DIPQ5VU43 2346 aa7.37□□□□□ -1.23
USP4-209ENST00000475873 ABTB2Q8N961 1025 aa7.37□□□□□ -1.23
USP4-209ENST00000475873 NUDT16Q96DE0 195 aaKnown RBP7.37□□□□□ -1.23
USP4-209ENST00000475873 LY75O60449 1722 aa7.36□□□□□ -1.23
USP4-209ENST00000475873 KIAA1551Q9HCM1 1747 aa7.36□□□□□ -1.23
USP4-209ENST00000475873 ZBTB7CA1YPR0 619 aa7.36□□□□□ -1.23
USP4-209ENST00000475873 FSTL1Q12841 308 aa7.36□□□□□ -1.23
USP4-209ENST00000475873 CDCA7Q9BWT1 371 aaPredicted RBP7.36□□□□□ -1.23
USP4-209ENST00000475873 CARD10Q9BWT7 1032 aa7.36□□□□□ -1.23
USP4-209ENST00000475873 TRAK1Q9UPV9 953 aa7.36□□□□□ -1.23
USP4-209ENST00000475873 TNRC18O15417 2968 aaPredicted RBP7.36□□□□□ -1.23
USP4-209ENST00000475873 NSD2O96028 1365 aa7.35□□□□□ -1.23
USP4-209ENST00000475873 EXOC5O00471 708 aa7.35□□□□□ -1.23
USP4-209ENST00000475873 FOXN1O15353 648 aa7.35□□□□□ -1.23
USP4-209ENST00000475873 SLC27A3Q5K4L6 730 aa7.35□□□□□ -1.23
USP4-209ENST00000475873 AMIGO3Q86WK7 504 aa7.35□□□□□ -1.23
USP4-209ENST00000475873 PPIP5K1Q6PFW1 1433 aa7.35□□□□□ -1.23
USP4-209ENST00000475873 KCPQ6ZWJ8 1503 aa7.34□□□□□ -1.23
USP4-209ENST00000475873 APLP2Q06481 763 aa7.34□□□□□ -1.23
USP4-209ENST00000475873 SMIM5Q71RC9 77 aa7.34□□□□□ -1.23
USP4-209ENST00000475873 TOGARAM1Q9Y4F4 1720 aa7.34□□□□□ -1.23
USP4-209ENST00000475873 PIK3C2AO00443 1686 aa7.34□□□□□ -1.23
USP4-209ENST00000475873 USP54Q70EL1 1684 aa7.34□□□□□ -1.23
USP4-209ENST00000475873 CPSF1Q10570 1443 aaKnown RBP7.34□□□□□ -1.23
USP4-209ENST00000475873 ERBB3P21860 1342 aa7.33□□□□□ -1.24
USP4-209ENST00000475873 PLEKHG3A1L390 1219 aa7.33□□□□□ -1.24
USP4-209ENST00000475873 NLRP13Q86W25 1043 aa7.33□□□□□ -1.24
USP4-209ENST00000475873 C10orf71Q711Q0 1435 aa7.33□□□□□ -1.24
USP4-209ENST00000475873 PXDNLA1KZ92 1463 aa7.32□□□□□ -1.24
USP4-209ENST00000475873 MSH5O43196 834 aa7.32□□□□□ -1.24
USP4-209ENST00000475873 ARHGEF25Q86VW2 580 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms