RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 SLIT3O75094 1523 aa18.22■□□□□ 0.51
SKA3-206ENST00000475251 NBPF1Q3BBV0 1214 aa18.21■□□□□ 0.51
SKA3-206ENST00000475251 QRICH2Q9H0J4 1663 aa18.2■□□□□ 0.5
SKA3-206ENST00000475251 BCL11BQ9C0K0 894 aaPredicted RBP18.2■□□□□ 0.5
SKA3-206ENST00000475251 SBF2Q86WG5 1849 aa18.19■□□□□ 0.5
SKA3-206ENST00000475251 CABP1Q9NZU7 370 aa18.19■□□□□ 0.5
SKA3-206ENST00000475251 WDR17Q8IZU2 1322 aa18.19■□□□□ 0.5
SKA3-206ENST00000475251 BCL9O00512 1426 aa18.18■□□□□ 0.5
SKA3-206ENST00000475251 KCNH5Q8NCM2 988 aa18.18■□□□□ 0.5
SKA3-206ENST00000475251 WNK3Q9BYP7 1800 aa18.17■□□□□ 0.5
SKA3-206ENST00000475251 AKAP12Q02952 1782 aa18.16■□□□□ 0.5
SKA3-206ENST00000475251 EVC2Q86UK5 1308 aa18.16■□□□□ 0.5
SKA3-206ENST00000475251 CPSF1Q10570 1443 aaKnown RBP18.15■□□□□ 0.5
SKA3-206ENST00000475251 CASZ1Q86V15 1759 aa18.15■□□□□ 0.5
SKA3-206ENST00000475251 ZNF692Q9BU19 519 aaPredicted RBP18.15■□□□□ 0.5
SKA3-206ENST00000475251 PIK3C2AO00443 1686 aa18.15■□□□□ 0.5
SKA3-206ENST00000475251 COL18A1P39060 1754 aa18.14■□□□□ 0.5
SKA3-206ENST00000475251 CSB-PGBD3P0DP91 1061 aa18.13■□□□□ 0.49
SKA3-206ENST00000475251 ANO8Q9HCE9 1232 aaPredicted RBP18.13■□□□□ 0.49
SKA3-206ENST00000475251 ARHGEF25Q86VW2 580 aa18.12■□□□□ 0.49
SKA3-206ENST00000475251 MARCH10Q8NA82 808 aaPredicted RBP18.12■□□□□ 0.49
SKA3-206ENST00000475251 CNKSR2Q8WXI2 1034 aa18.12■□□□□ 0.49
SKA3-206ENST00000475251 CARD10Q9BWT7 1032 aa18.12■□□□□ 0.49
SKA3-206ENST00000475251 STK32BQ9NY57 414 aa18.12■□□□□ 0.49
SKA3-206ENST00000475251 AXIN2Q9Y2T1 843 aa18.12■□□□□ 0.49
SKA3-206ENST00000475251 TTC21AQ8NDW8 1320 aa18.12■□□□□ 0.49
SKA3-206ENST00000475251 TRPM1Q7Z4N2 1603 aa18.12■□□□□ 0.49
SKA3-206ENST00000475251 EXOC5O00471 708 aa18.11■□□□□ 0.49
SKA3-206ENST00000475251 CCDC7Q96M83 1385 aa18.11■□□□□ 0.49
SKA3-206ENST00000475251 ABCC6O95255 1503 aa18.1■□□□□ 0.49
SKA3-206ENST00000475251 TTC21BQ7Z4L5 1316 aa18.1■□□□□ 0.49
SKA3-206ENST00000475251 TXNRD1Q16881 649 aa18.1■□□□□ 0.49
SKA3-206ENST00000475251 ZBTB7AO95365 584 aa18.09■□□□□ 0.49
SKA3-206ENST00000475251 PROM2Q8N271 834 aa18.09■□□□□ 0.49
SKA3-206ENST00000475251 SLC15A2Q16348 729 aa18.08■□□□□ 0.48
SKA3-206ENST00000475251 PTF1AQ7RTS3 328 aa18.08■□□□□ 0.48
SKA3-206ENST00000475251 TNS2Q63HR2 1409 aa18.06■□□□□ 0.48
SKA3-206ENST00000475251 MYOM1P52179 1685 aa18.06■□□□□ 0.48
SKA3-206ENST00000475251 SOX12O15370 315 aa18.06■□□□□ 0.48
SKA3-206ENST00000475251 PTGER2P43116 358 aa18.06■□□□□ 0.48
SKA3-206ENST00000475251 MTFR1LQ9H019 292 aa18.06■□□□□ 0.48
SKA3-206ENST00000475251 RGPD5Q99666 1765 aa18.06■□□□□ 0.48
SKA3-206ENST00000475251 PDGFDQ9GZP0 370 aaPredicted RBP18.05■□□□□ 0.48
SKA3-206ENST00000475251 ATF5Q9Y2D1 282 aaPredicted RBP18.05■□□□□ 0.48
SKA3-206ENST00000475251 KTN1Q86UP2 1357 aaKnown RBP18.04■□□□□ 0.48
SKA3-206ENST00000475251 NFAT5O94916 1531 aa18.04■□□□□ 0.48
SKA3-206ENST00000475251 ROCK2O75116 1388 aaKnown RBP18.04■□□□□ 0.48
SKA3-206ENST00000475251 NHSQ6T4R5 1651 aa18.03■□□□□ 0.48
SKA3-206ENST00000475251 L3MBTL2Q969R5 705 aa18.03■□□□□ 0.48
SKA3-206ENST00000475251 SYT17Q9BSW7 474 aa18.02■□□□□ 0.48
SKA3-206ENST00000475251 FHDC1Q9C0D6 1143 aaPredicted RBP18.02■□□□□ 0.48
SKA3-206ENST00000475251 HOXD11P31277 338 aaPredicted RBP18■□□□□ 0.47
SKA3-206ENST00000475251 MON2Q7Z3U7 1717 aa18■□□□□ 0.47
SKA3-206ENST00000475251 ERBB3P21860 1342 aa17.99■□□□□ 0.47
SKA3-206ENST00000475251 IL2RBP14784 551 aa17.99■□□□□ 0.47
SKA3-206ENST00000475251 ZNF784Q8NCA9 323 aaPredicted RBP17.99■□□□□ 0.47
SKA3-206ENST00000475251 NLRP2Q9NX02 1062 aa17.99■□□□□ 0.47
SKA3-206ENST00000475251 USP31Q70CQ4 1352 aa17.99■□□□□ 0.47
SKA3-206ENST00000475251 ARXQ96QS3 562 aa17.98■□□□□ 0.47
SKA3-206ENST00000475251 SGIP1Q9BQI5 828 aa17.98■□□□□ 0.47
SKA3-206ENST00000475251 USP54Q70EL1 1684 aa17.98■□□□□ 0.47
SKA3-206ENST00000475251 MAP3K5Q99683 1374 aa17.97■□□□□ 0.47
SKA3-206ENST00000475251 SBNO2Q9Y2G9 1366 aa17.97■□□□□ 0.47
SKA3-206ENST00000475251 ACSBG1Q96GR2 724 aa17.97■□□□□ 0.47
SKA3-206ENST00000475251 CHD4Q14839 1912 aa17.96■□□□□ 0.47
SKA3-206ENST00000475251 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.96■□□□□ 0.47
SKA3-206ENST00000475251 PAPPAQ13219 1627 aa17.96■□□□□ 0.47
SKA3-206ENST00000475251 LTN1O94822 1766 aa17.94■□□□□ 0.46
SKA3-206ENST00000475251 BTAF1O14981 1849 aa17.94■□□□□ 0.46
SKA3-206ENST00000475251 HDGFL2Q7Z4V5 671 aaPredicted RBP17.94■□□□□ 0.46
SKA3-206ENST00000475251 ANKRD24Q8TF21 1146 aa17.93■□□□□ 0.46
SKA3-206ENST00000475251 SLC16A10Q8TF71 515 aa17.93■□□□□ 0.46
SKA3-206ENST00000475251 SLC27A3Q5K4L6 730 aa17.92■□□□□ 0.46
SKA3-206ENST00000475251 POLD1P28340 1107 aa17.91■□□□□ 0.46
SKA3-206ENST00000475251 NME9Q86XW9 330 aa17.91■□□□□ 0.46
SKA3-206ENST00000475251 TMC1Q8TDI8 760 aa17.91■□□□□ 0.46
SKA3-206ENST00000475251 EDC4Q6P2E9 1401 aaKnown RBP17.9■□□□□ 0.46
SKA3-206ENST00000475251 TERF2IPQ9NYB0 399 aa17.9■□□□□ 0.46
SKA3-206ENST00000475251 FAM208AQ9UK61 1670 aaKnown RBP17.9■□□□□ 0.46
SKA3-206ENST00000475251 CD163L1Q9NR16 1453 aa17.89■□□□□ 0.45
SKA3-206ENST00000475251 NEUROD1Q13562 356 aa17.89■□□□□ 0.45
SKA3-206ENST00000475251 GPR162Q16538 588 aa17.89■□□□□ 0.45
SKA3-206ENST00000475251 ZNF827Q17R98 1081 aa17.89■□□□□ 0.45
SKA3-206ENST00000475251 SIN3AQ96ST3 1273 aa17.89■□□□□ 0.45
SKA3-206ENST00000475251 RNF216Q9NWF9 866 aaPredicted RBP17.89■□□□□ 0.45
SKA3-206ENST00000475251 QSER1Q2KHR3 1735 aa17.89■□□□□ 0.45
SKA3-206ENST00000475251 SENP3-EIF4A1A0A087X0R7 540 aa17.88■□□□□ 0.45
SKA3-206ENST00000475251 C1QTNF8P60827 252 aa17.87■□□□□ 0.45
SKA3-206ENST00000475251 AKT1S1Q96B36 256 aa17.87■□□□□ 0.45
SKA3-206ENST00000475251 CARD11Q9BXL7 1154 aa17.87■□□□□ 0.45
SKA3-206ENST00000475251 LRRC4BQ9NT99 713 aa17.87■□□□□ 0.45
SKA3-206ENST00000475251 KAT6BQ8WYB5 2073 aa17.87■□□□□ 0.45
SKA3-206ENST00000475251 UTRNP46939 3433 aa17.86■□□□□ 0.45
SKA3-206ENST00000475251 PUS7Q96PZ0 661 aaKnown RBP17.86■□□□□ 0.45
SKA3-206ENST00000475251 KLHL34Q8N239 644 aa17.85■□□□□ 0.45
SKA3-206ENST00000475251 DDX54Q8TDD1 881 aaKnown RBP17.85■□□□□ 0.45
SKA3-206ENST00000475251 IP6K1Q92551 441 aa17.85■□□□□ 0.45
SKA3-206ENST00000475251 TFCP2L1Q9NZI6 479 aa17.85■□□□□ 0.45
SKA3-206ENST00000475251 SLC12A5Q9H2X9 1139 aa17.84■□□□□ 0.45
SKA3-206ENST00000475251 A0A1W2PP64 1363 aa17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms