RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 ANKRD36BQ8N2N9 1353 aa16.71■□□□□ 0.27
SYNE1-221ENST00000472563 AKAP12Q02952 1782 aa16.71■□□□□ 0.27
SYNE1-221ENST00000472563 PDE3BQ13370 1112 aa16.7■□□□□ 0.26
SYNE1-221ENST00000472563 FAM182BQ5T319 152 aa16.7■□□□□ 0.26
SYNE1-221ENST00000472563 NFAT5O94916 1531 aa16.7■□□□□ 0.26
SYNE1-221ENST00000472563 THSD7AQ9UPZ6 1657 aa16.69■□□□□ 0.26
SYNE1-221ENST00000472563 FAM196AQ6ZSG2 479 aa16.69■□□□□ 0.26
SYNE1-221ENST00000472563 DEFB132Q7Z7B7 95 aa16.69■□□□□ 0.26
SYNE1-221ENST00000472563 MON2Q7Z3U7 1717 aa16.68■□□□□ 0.26
SYNE1-221ENST00000472563 CSB-PGBD3P0DP91 1061 aa16.68■□□□□ 0.26
SYNE1-221ENST00000472563 COG3Q96JB2 828 aa16.68■□□□□ 0.26
SYNE1-221ENST00000472563 CARD10Q9BWT7 1032 aa16.68■□□□□ 0.26
SYNE1-221ENST00000472563 OVOS2A0A0J9YW53 1432 aa16.68■□□□□ 0.26
SYNE1-221ENST00000472563 OVOS2Q6IE36 1432 aa16.68■□□□□ 0.26
SYNE1-221ENST00000472563 CDCA7Q9BWT1 371 aaPredicted RBP16.67■□□□□ 0.26
SYNE1-221ENST00000472563 BAG6P46379 1132 aa16.66■□□□□ 0.26
SYNE1-221ENST00000472563 EIF4G2P78344 907 aaKnown RBP eCLIP16.66■□□□□ 0.26
SYNE1-221ENST00000472563 ABCC6O95255 1503 aa16.65■□□□□ 0.26
SYNE1-221ENST00000472563 FYB1O15117 783 aa16.65■□□□□ 0.26
SYNE1-221ENST00000472563 BRWD3Q6RI45 1802 aa16.64■□□□□ 0.25
SYNE1-221ENST00000472563 C11orf95C9JLR9 678 aaPredicted RBP16.64■□□□□ 0.25
SYNE1-221ENST00000472563 ERBB3P21860 1342 aa16.64■□□□□ 0.25
SYNE1-221ENST00000472563 COL18A1P39060 1754 aa16.64■□□□□ 0.25
SYNE1-221ENST00000472563 HSPA5P11021 654 aaKnown RBP16.63■□□□□ 0.25
SYNE1-221ENST00000472563 DDB1Q16531 1140 aa16.63■□□□□ 0.25
SYNE1-221ENST00000472563 IP6K1Q92551 441 aa16.63■□□□□ 0.25
SYNE1-221ENST00000472563 CCDC7Q96M83 1385 aa16.63■□□□□ 0.25
SYNE1-221ENST00000472563 TRIM37O94972 964 aa16.62■□□□□ 0.25
SYNE1-221ENST00000472563 ANKRD24Q8TF21 1146 aa16.62■□□□□ 0.25
SYNE1-221ENST00000472563 CARD14Q9BXL6 1004 aa16.62■□□□□ 0.25
SYNE1-221ENST00000472563 USP54Q70EL1 1684 aa16.62■□□□□ 0.25
SYNE1-221ENST00000472563 GGNBP2Q9H3C7 697 aa16.61■□□□□ 0.25
SYNE1-221ENST00000472563 NLRP2Q9NX02 1062 aa16.61■□□□□ 0.25
SYNE1-221ENST00000472563 MAP3K19Q56UN5 1328 aa16.61■□□□□ 0.25
SYNE1-221ENST00000472563 DISP2A7MBM2 1401 aa16.6■□□□□ 0.25
SYNE1-221ENST00000472563 EN1Q05925 392 aaPredicted RBP16.59■□□□□ 0.25
SYNE1-221ENST00000472563 EXOC5O00471 708 aa16.58■□□□□ 0.24
SYNE1-221ENST00000472563 APBA3O96018 575 aa16.58■□□□□ 0.24
SYNE1-221ENST00000472563 FBLN1P23142 703 aa16.58■□□□□ 0.24
SYNE1-221ENST00000472563 AMPHP49418 695 aa16.58■□□□□ 0.24
SYNE1-221ENST00000472563 OVOS2A0A0G2JMS6 1433 aa16.57■□□□□ 0.24
SYNE1-221ENST00000472563 HOXC9P31274 260 aa16.57■□□□□ 0.24
SYNE1-221ENST00000472563 MARCH10Q8NA82 808 aaPredicted RBP16.57■□□□□ 0.24
SYNE1-221ENST00000472563 CAMKK2Q96RR4 588 aa16.57■□□□□ 0.24
SYNE1-221ENST00000472563 NSD3Q9BZ95 1437 aa16.56■□□□□ 0.24
SYNE1-221ENST00000472563 BCL9O00512 1426 aa16.55■□□□□ 0.24
SYNE1-221ENST00000472563 RTL1A6NKG5 1358 aa16.55■□□□□ 0.24
SYNE1-221ENST00000472563 PARD3Q8TEW0 1356 aa16.55■□□□□ 0.24
SYNE1-221ENST00000472563 IL2RBP14784 551 aa16.55■□□□□ 0.24
SYNE1-221ENST00000472563 POLR3GLQ9BT43 218 aa16.55■□□□□ 0.24
SYNE1-221ENST00000472563 CGNL1Q0VF96 1302 aa16.54■□□□□ 0.24
SYNE1-221ENST00000472563 RRS1Q15050 365 aaKnown RBP16.54■□□□□ 0.24
SYNE1-221ENST00000472563 EZH2Q15910 746 aaKnown RBP16.54■□□□□ 0.24
SYNE1-221ENST00000472563 LTV1Q96GA3 475 aaPredicted RBP16.54■□□□□ 0.24
SYNE1-221ENST00000472563 PARP4Q9UKK3 1724 aaKnown RBP16.53■□□□□ 0.24
SYNE1-221ENST00000472563 BCL11BQ9C0K0 894 aaPredicted RBP16.53■□□□□ 0.24
SYNE1-221ENST00000472563 SRCAPQ6ZRS2 3230 aa16.53■□□□□ 0.24
SYNE1-221ENST00000472563 KIF24Q5T7B8 1368 aa16.51■□□□□ 0.23
SYNE1-221ENST00000472563 TNS2Q63HR2 1409 aa16.51■□□□□ 0.23
SYNE1-221ENST00000472563 PANK3Q9H999 370 aa16.5■□□□□ 0.23
SYNE1-221ENST00000472563 RGPD1P0DJD0 1748 aa16.5■□□□□ 0.23
SYNE1-221ENST00000472563 INSRP06213 1382 aa16.5■□□□□ 0.23
SYNE1-221ENST00000472563 LRRC37A3O60309 1634 aa16.49■□□□□ 0.23
SYNE1-221ENST00000472563 PLSCR1O15162 318 aa16.49■□□□□ 0.23
SYNE1-221ENST00000472563 HSP90AB2PQ58FF8 381 aa16.49■□□□□ 0.23
SYNE1-221ENST00000472563 FLT4P35916 1363 aa16.49■□□□□ 0.23
SYNE1-221ENST00000472563 NBPF6Q5VWK0 638 aa16.48■□□□□ 0.23
SYNE1-221ENST00000472563 PTF1AQ7RTS3 328 aa16.48■□□□□ 0.23
SYNE1-221ENST00000472563 NBPF4Q96M43 638 aa16.48■□□□□ 0.23
SYNE1-221ENST00000472563 MYOM1P52179 1685 aa16.47■□□□□ 0.23
SYNE1-221ENST00000472563 PSDA5PKW4 1024 aaPredicted RBP16.47■□□□□ 0.23
SYNE1-221ENST00000472563 EMILIN1Q9Y6C2 1016 aa16.47■□□□□ 0.23
SYNE1-221ENST00000472563 PEAK1Q9H792 1746 aa16.47■□□□□ 0.23
SYNE1-221ENST00000472563 SMG6Q86US8 1419 aaKnown RBP16.46■□□□□ 0.23
SYNE1-221ENST00000472563 TNS1Q9HBL0 1735 aaKnown RBP16.45■□□□□ 0.22
SYNE1-221ENST00000472563 R3HDM1Q15032 1099 aaKnown RBP16.45■□□□□ 0.22
SYNE1-221ENST00000472563 NBPF14Q5TI25 921 aa16.45■□□□□ 0.22
SYNE1-221ENST00000472563 LTN1O94822 1766 aa16.45■□□□□ 0.22
SYNE1-221ENST00000472563 RGPD5Q99666 1765 aa16.45■□□□□ 0.22
SYNE1-221ENST00000472563 KIF7Q2M1P5 1343 aa16.45■□□□□ 0.22
SYNE1-221ENST00000472563 WASHC2AQ641Q2 1341 aa16.45■□□□□ 0.22
SYNE1-221ENST00000472563 KCNQ2O43526 872 aa16.44■□□□□ 0.22
SYNE1-221ENST00000472563 DDX54Q8TDD1 881 aaKnown RBP16.44■□□□□ 0.22
SYNE1-221ENST00000472563 POLKQ9UBT6 870 aa16.44■□□□□ 0.22
SYNE1-221ENST00000472563 NSD2O96028 1365 aa16.43■□□□□ 0.22
SYNE1-221ENST00000472563 PPM1GO15355 546 aaPredicted RBP16.43■□□□□ 0.22
SYNE1-221ENST00000472563 ZCRB1Q8TBF4 217 aaKnown RBP16.43■□□□□ 0.22
SYNE1-221ENST00000472563 RAPGEF4Q8WZA2 1011 aa16.43■□□□□ 0.22
SYNE1-221ENST00000472563 USHBP1Q8N6Y0 703 aa16.42■□□□□ 0.22
SYNE1-221ENST00000472563 PROM2Q8N271 834 aa16.41■□□□□ 0.22
SYNE1-221ENST00000472563 ACSBG1Q96GR2 724 aa16.41■□□□□ 0.22
SYNE1-221ENST00000472563 KNSTRNQ9Y448 316 aa16.41■□□□□ 0.22
SYNE1-221ENST00000472563 WNK3Q9BYP7 1800 aa16.4■□□□□ 0.22
SYNE1-221ENST00000472563 TATP17735 454 aaPredicted RBP16.4■□□□□ 0.22
SYNE1-221ENST00000472563 TNNT2P45379 298 aaPredicted RBP16.4■□□□□ 0.22
SYNE1-221ENST00000472563 MEGF6O75095 1541 aa16.4■□□□□ 0.22
SYNE1-221ENST00000472563 TXNRD1Q16881 649 aa16.39■□□□□ 0.21
SYNE1-221ENST00000472563 FAM208AQ9UK61 1670 aaKnown RBP16.38■□□□□ 0.21
SYNE1-221ENST00000472563 MORC1Q86VD1 984 aa16.38■□□□□ 0.21
SYNE1-221ENST00000472563 AMER1Q5JTC6 1135 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms