RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 AXIN2Q9Y2T1 843 aa22.19■■□□□ 1.14
CCDC88B-205ENST00000472524 ST20-MTHFSA0A0A6YYL1 179 aa22.18■■□□□ 1.14
CCDC88B-205ENST00000472524 TOM1L2Q6ZVM7 507 aa22.17■■□□□ 1.14
CCDC88B-205ENST00000472524 PCGF6Q9BYE7 350 aa22.17■■□□□ 1.14
CCDC88B-205ENST00000472524 SLC12A5Q9H2X9 1139 aa22.17■■□□□ 1.14
CCDC88B-205ENST00000472524 PARP4Q9UKK3 1724 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-205ENST00000472524 USP54Q70EL1 1684 aa22.17■■□□□ 1.14
CCDC88B-205ENST00000472524 WNK3Q9BYP7 1800 aa22.16■■□□□ 1.14
CCDC88B-205ENST00000472524 HDGFL2Q7Z4V5 671 aaPredicted RBP22.16■■□□□ 1.14
CCDC88B-205ENST00000472524 KCNH5Q8NCM2 988 aa22.16■■□□□ 1.14
CCDC88B-205ENST00000472524 NFAT5O94916 1531 aa22.16■■□□□ 1.14
CCDC88B-205ENST00000472524 LTN1O94822 1766 aa22.15■■□□□ 1.14
CCDC88B-205ENST00000472524 TESK2Q96S53 571 aa22.15■■□□□ 1.14
CCDC88B-205ENST00000472524 ARHGEF25Q86VW2 580 aa22.14■■□□□ 1.13
CCDC88B-205ENST00000472524 OVOS2A0A0G2JMS6 1433 aa22.14■■□□□ 1.13
CCDC88B-205ENST00000472524 OVOS2A0A0J9YW53 1432 aa22.14■■□□□ 1.13
CCDC88B-205ENST00000472524 OVOS2Q6IE36 1432 aa22.14■■□□□ 1.13
CCDC88B-205ENST00000472524 A0A1W2PP64 1363 aa22.13■■□□□ 1.13
CCDC88B-205ENST00000472524 WDR17Q8IZU2 1322 aa22.13■■□□□ 1.13
CCDC88B-205ENST00000472524 DDB1Q16531 1140 aa22.13■■□□□ 1.13
CCDC88B-205ENST00000472524 NBPF14Q5TI25 921 aa22.13■■□□□ 1.13
CCDC88B-205ENST00000472524 USP47Q96K76 1375 aa22.12■■□□□ 1.13
CCDC88B-205ENST00000472524 RREB1Q92766 1687 aa22.12■■□□□ 1.13
CCDC88B-205ENST00000472524 PTF1AQ7RTS3 328 aa22.12■■□□□ 1.13
CCDC88B-205ENST00000472524 NME9Q86XW9 330 aa22.12■■□□□ 1.13
CCDC88B-205ENST00000472524 TERF2IPQ9NYB0 399 aa22.12■■□□□ 1.13
CCDC88B-205ENST00000472524 EDC4Q6P2E9 1401 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-205ENST00000472524 C11orf95C9JLR9 678 aaPredicted RBP22.11■■□□□ 1.13
CCDC88B-205ENST00000472524 PUS7Q96PZ0 661 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-205ENST00000472524 USP31Q70CQ4 1352 aa22.11■■□□□ 1.13
CCDC88B-205ENST00000472524 LRRC37A3O60309 1634 aa22.1■■□□□ 1.13
CCDC88B-205ENST00000472524 NUP188Q5SRE5 1749 aa22.1■■□□□ 1.13
CCDC88B-205ENST00000472524 PEAK1Q9H792 1746 aa22.09■■□□□ 1.13
CCDC88B-205ENST00000472524 CSB-PGBD3P0DP91 1061 aa22.09■■□□□ 1.13
CCDC88B-205ENST00000472524 MARCH10Q8NA82 808 aaPredicted RBP22.09■■□□□ 1.13
CCDC88B-205ENST00000472524 NINLQ9Y2I6 1382 aa22.08■■□□□ 1.12
CCDC88B-205ENST00000472524 SLC24A1O60721 1099 aa22.07■■□□□ 1.12
CCDC88B-205ENST00000472524 CARD10Q9BWT7 1032 aa22.07■■□□□ 1.12
CCDC88B-205ENST00000472524 CLSPNQ9HAW4 1339 aa22.06■■□□□ 1.12
CCDC88B-205ENST00000472524 ABCC6O95255 1503 aa22.06■■□□□ 1.12
CCDC88B-205ENST00000472524 PLSCR1O15162 318 aa22.06■■□□□ 1.12
CCDC88B-205ENST00000472524 CDCA7Q9BWT1 371 aaPredicted RBP22.06■■□□□ 1.12
CCDC88B-205ENST00000472524 BCL11BQ9C0K0 894 aaPredicted RBP22.06■■□□□ 1.12
CCDC88B-205ENST00000472524 SBF2Q86WG5 1849 aa22.05■■□□□ 1.12
CCDC88B-205ENST00000472524 TMF1P82094 1093 aa22.04■■□□□ 1.12
CCDC88B-205ENST00000472524 ANO8Q9HCE9 1232 aaPredicted RBP22.04■■□□□ 1.12
CCDC88B-205ENST00000472524 PROM2Q8N271 834 aa22.02■■□□□ 1.12
CCDC88B-205ENST00000472524 SPON1Q9HCB6 807 aa22.02■■□□□ 1.12
CCDC88B-205ENST00000472524 TIMELESSQ9UNS1 1208 aa22.02■■□□□ 1.12
CCDC88B-205ENST00000472524 BCL9O00512 1426 aa22.02■■□□□ 1.12
CCDC88B-205ENST00000472524 ANKRD36BQ8N2N9 1353 aa22■■□□□ 1.11
CCDC88B-205ENST00000472524 EXOC5O00471 708 aa22■■□□□ 1.11
CCDC88B-205ENST00000472524 KCNQ2O43526 872 aa22■■□□□ 1.11
CCDC88B-205ENST00000472524 KIF20BQ96Q89 1820 aa21.99■■□□□ 1.11
CCDC88B-205ENST00000472524 CCDC7Q96M83 1385 aa21.99■■□□□ 1.11
CCDC88B-205ENST00000472524 MYOM1P52179 1685 aa21.98■■□□□ 1.11
CCDC88B-205ENST00000472524 PDGFDQ9GZP0 370 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-205ENST00000472524 PPP1R1BQ9UD71 204 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-205ENST00000472524 CCER1Q8TC90 406 aaPredicted RBP21.97■■□□□ 1.11
CCDC88B-205ENST00000472524 ERBB3P21860 1342 aa21.97■■□□□ 1.11
CCDC88B-205ENST00000472524 KAT6BQ8WYB5 2073 aa21.97■■□□□ 1.11
CCDC88B-205ENST00000472524 COG3Q96JB2 828 aa21.96■■□□□ 1.11
CCDC88B-205ENST00000472524 NLRP2Q9NX02 1062 aa21.96■■□□□ 1.11
CCDC88B-205ENST00000472524 TNS2Q63HR2 1409 aa21.96■■□□□ 1.11
CCDC88B-205ENST00000472524 TXNRD1Q16881 649 aa21.95■■□□□ 1.1
CCDC88B-205ENST00000472524 CDCA8Q53HL2 280 aa21.95■■□□□ 1.1
CCDC88B-205ENST00000472524 FAM208AQ9UK61 1670 aaKnown RBP21.95■■□□□ 1.1
CCDC88B-205ENST00000472524 RGPD3A6NKT7 1758 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-205ENST00000472524 RGPD4Q7Z3J3 1758 aa21.94■■□□□ 1.1
CCDC88B-205ENST00000472524 ANKRD24Q8TF21 1146 aa21.94■■□□□ 1.1
CCDC88B-205ENST00000472524 RGPD2P0DJD1 1756 aa21.93■■□□□ 1.1
CCDC88B-205ENST00000472524 ZBTB7AO95365 584 aa21.92■■□□□ 1.1
CCDC88B-205ENST00000472524 ACSBG1Q96GR2 724 aa21.91■■□□□ 1.1
CCDC88B-205ENST00000472524 IL2RBP14784 551 aa21.9■■□□□ 1.1
CCDC88B-205ENST00000472524 FBLN1P23142 703 aa21.9■■□□□ 1.1
CCDC88B-205ENST00000472524 IP6K1Q92551 441 aa21.9■■□□□ 1.1
CCDC88B-205ENST00000472524 LTV1Q96GA3 475 aaPredicted RBP21.9■■□□□ 1.1
CCDC88B-205ENST00000472524 MAP3K19Q56UN5 1328 aa21.89■■□□□ 1.1
CCDC88B-205ENST00000472524 GGNBP2Q9H3C7 697 aa21.89■■□□□ 1.09
CCDC88B-205ENST00000472524 STK32BQ9NY57 414 aa21.89■■□□□ 1.09
CCDC88B-205ENST00000472524 CASZ1Q86V15 1759 aa21.87■■□□□ 1.09
CCDC88B-205ENST00000472524 FYB1O15117 783 aa21.87■■□□□ 1.09
CCDC88B-205ENST00000472524 YY1P25490 414 aa21.87■■□□□ 1.09
CCDC88B-205ENST00000472524 AMPHP49418 695 aa21.87■■□□□ 1.09
CCDC88B-205ENST00000472524 SLC15A2Q16348 729 aa21.87■■□□□ 1.09
CCDC88B-205ENST00000472524 ATF5Q9Y2D1 282 aaPredicted RBP21.87■■□□□ 1.09
CCDC88B-205ENST00000472524 PTGER2P43116 358 aa21.86■■□□□ 1.09
CCDC88B-205ENST00000472524 HOXC9P31274 260 aa21.85■■□□□ 1.09
CCDC88B-205ENST00000472524 RRS1Q15050 365 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-205ENST00000472524 POLR3GLQ9BT43 218 aa21.85■■□□□ 1.09
CCDC88B-205ENST00000472524 NSD3Q9BZ95 1437 aa21.85■■□□□ 1.09
CCDC88B-205ENST00000472524 NHSQ6T4R5 1651 aa21.85■■□□□ 1.09
CCDC88B-205ENST00000472524 CARD14Q9BXL6 1004 aa21.82■■□□□ 1.08
CCDC88B-205ENST00000472524 RTL1A6NKG5 1358 aa21.82■■□□□ 1.08
CCDC88B-205ENST00000472524 EIF4G2P78344 907 aaKnown RBP eCLIP21.81■■□□□ 1.08
CCDC88B-205ENST00000472524 BTAF1O14981 1849 aa21.8■■□□□ 1.08
CCDC88B-205ENST00000472524 DCAF8L1A6NGE4 600 aa21.8■■□□□ 1.08
CCDC88B-205ENST00000472524 HSPA5P11021 654 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-205ENST00000472524 MAP2P11137 1827 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-205ENST00000472524 DDX54Q8TDD1 881 aaKnown RBP21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms