RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 ZBTB7CA1YPR0 619 aa26.91■■□□□ 1.9
SHH-205ENST00000472308 BRD4O60885 1362 aaPredicted RBP26.91■■□□□ 1.9
SHH-205ENST00000472308 MARCH10Q8NA82 808 aaPredicted RBP26.9■■□□□ 1.9
SHH-205ENST00000472308 ZNF784Q8NCA9 323 aaPredicted RBP26.9■■□□□ 1.9
SHH-205ENST00000472308 USP6P35125 1406 aa26.9■■□□□ 1.9
SHH-205ENST00000472308 SRPK2P78362 688 aaKnown RBP26.88■■□□□ 1.89
SHH-205ENST00000472308 TOM1L2Q6ZVM7 507 aa26.88■■□□□ 1.89
SHH-205ENST00000472308 CABP2Q9NPB3 220 aa26.88■■□□□ 1.89
SHH-205ENST00000472308 PIK3C2AO00443 1686 aa26.87■■□□□ 1.89
SHH-205ENST00000472308 NBPF1Q3BBV0 1214 aa26.87■■□□□ 1.89
SHH-205ENST00000472308 AXIN2Q9Y2T1 843 aa26.87■■□□□ 1.89
SHH-205ENST00000472308 NLRP6P59044 892 aa26.86■■□□□ 1.89
SHH-205ENST00000472308 WDR17Q8IZU2 1322 aa26.86■■□□□ 1.89
SHH-205ENST00000472308 AKAP12Q02952 1782 aa26.85■■□□□ 1.89
SHH-205ENST00000472308 ATF5Q9Y2D1 282 aaPredicted RBP26.85■■□□□ 1.89
SHH-205ENST00000472308 CPSF1Q10570 1443 aaKnown RBP26.83■■□□□ 1.89
SHH-205ENST00000472308 TXNRD1Q16881 649 aa26.82■■□□□ 1.88
SHH-205ENST00000472308 FHDC1Q9C0D6 1143 aaPredicted RBP26.82■■□□□ 1.88
SHH-205ENST00000472308 CABP1Q9NZU7 370 aa26.82■■□□□ 1.88
SHH-205ENST00000472308 CENPJQ9HC77 1338 aaPredicted RBP26.82■■□□□ 1.88
SHH-205ENST00000472308 SGIP1Q9BQI5 828 aa26.81■■□□□ 1.88
SHH-205ENST00000472308 SYT17Q9BSW7 474 aa26.81■■□□□ 1.88
SHH-205ENST00000472308 CDCA7Q9BWT1 371 aaPredicted RBP26.81■■□□□ 1.88
SHH-205ENST00000472308 QRICH2Q9H0J4 1663 aa26.8■■□□□ 1.88
SHH-205ENST00000472308 SLC15A2Q16348 729 aa26.8■■□□□ 1.88
SHH-205ENST00000472308 STK32BQ9NY57 414 aa26.8■■□□□ 1.88
SHH-205ENST00000472308 ARHGEF25Q86VW2 580 aa26.77■■□□□ 1.88
SHH-205ENST00000472308 CARD10Q9BWT7 1032 aa26.77■■□□□ 1.88
SHH-205ENST00000472308 MTFR1LQ9H019 292 aa26.76■■□□□ 1.87
SHH-205ENST00000472308 RGPD5Q99666 1765 aa26.76■■□□□ 1.87
SHH-205ENST00000472308 PAPPAQ13219 1627 aa26.74■■□□□ 1.87
SHH-205ENST00000472308 TNS2Q63HR2 1409 aa26.73■■□□□ 1.87
SHH-205ENST00000472308 TRPM1Q7Z4N2 1603 aa26.73■■□□□ 1.87
SHH-205ENST00000472308 NHSQ6T4R5 1651 aa26.73■■□□□ 1.87
SHH-205ENST00000472308 NFAT5O94916 1531 aa26.72■■□□□ 1.87
SHH-205ENST00000472308 GOLGB1Q14789 3259 aaKnown RBP26.72■■□□□ 1.87
SHH-205ENST00000472308 CHD4Q14839 1912 aa26.71■■□□□ 1.87
SHH-205ENST00000472308 SENP3-EIF4A1A0A087X0R7 540 aa26.7■■□□□ 1.86
SHH-205ENST00000472308 EXOC5O00471 708 aa26.7■■□□□ 1.86
SHH-205ENST00000472308 TTC21BQ7Z4L5 1316 aa26.69■■□□□ 1.86
SHH-205ENST00000472308 SOX12O15370 315 aa26.69■■□□□ 1.86
SHH-205ENST00000472308 CSB-PGBD3P0DP91 1061 aa26.69■■□□□ 1.86
SHH-205ENST00000472308 C1QTNF8P60827 252 aa26.69■■□□□ 1.86
SHH-205ENST00000472308 MAP3K5Q99683 1374 aa26.69■■□□□ 1.86
SHH-205ENST00000472308 KCNH5Q8NCM2 988 aa26.68■■□□□ 1.86
SHH-205ENST00000472308 ABCC6O95255 1503 aa26.68■■□□□ 1.86
SHH-205ENST00000472308 CCDC7Q96M83 1385 aa26.68■■□□□ 1.86
SHH-205ENST00000472308 ARXQ96QS3 562 aa26.67■■□□□ 1.86
SHH-205ENST00000472308 ACSBG1Q96GR2 724 aa26.64■■□□□ 1.86
SHH-205ENST00000472308 ZNF827Q17R98 1081 aa26.63■■□□□ 1.85
SHH-205ENST00000472308 EVC2Q86UK5 1308 aa26.62■■□□□ 1.85
SHH-205ENST00000472308 TTC21AQ8NDW8 1320 aa26.62■■□□□ 1.85
SHH-205ENST00000472308 CEP350Q5VT06 3117 aa26.61■■□□□ 1.85
SHH-205ENST00000472308 BTAF1O14981 1849 aa26.61■■□□□ 1.85
SHH-205ENST00000472308 ZNF692Q9BU19 519 aaPredicted RBP26.6■■□□□ 1.85
SHH-205ENST00000472308 LRRC4BQ9NT99 713 aa26.59■■□□□ 1.85
SHH-205ENST00000472308 ERBB3P21860 1342 aa26.58■■□□□ 1.85
SHH-205ENST00000472308 KTN1Q86UP2 1357 aaKnown RBP26.54■■□□□ 1.84
SHH-205ENST00000472308 USP54Q70EL1 1684 aa26.54■■□□□ 1.84
SHH-205ENST00000472308 COL24A1Q17RW2 1714 aa26.53■■□□□ 1.84
SHH-205ENST00000472308 MON2Q7Z3U7 1717 aa26.53■■□□□ 1.84
SHH-205ENST00000472308 GPR162Q16538 588 aa26.53■■□□□ 1.84
SHH-205ENST00000472308 AKT1S1Q96B36 256 aa26.53■■□□□ 1.84
SHH-205ENST00000472308 IL2RBP14784 551 aa26.52■■□□□ 1.84
SHH-205ENST00000472308 USP31Q70CQ4 1352 aa26.52■■□□□ 1.84
SHH-205ENST00000472308 NLRP2Q9NX02 1062 aa26.52■■□□□ 1.84
SHH-205ENST00000472308 QSER1Q2KHR3 1735 aa26.51■■□□□ 1.83
SHH-205ENST00000472308 SHANK3Q9BYB0 1731 aa26.51■■□□□ 1.83
SHH-205ENST00000472308 GIGYF1O75420 1035 aaPredicted RBP26.49■■□□□ 1.83
SHH-205ENST00000472308 LTN1O94822 1766 aa26.48■■□□□ 1.83
SHH-205ENST00000472308 PNPLA7Q6ZV29 1317 aa26.48■■□□□ 1.83
SHH-205ENST00000472308 L3MBTL2Q969R5 705 aa26.48■■□□□ 1.83
SHH-205ENST00000472308 SLC16A10Q8TF71 515 aa26.47■■□□□ 1.83
SHH-205ENST00000472308 CD163L1Q9NR16 1453 aa26.47■■□□□ 1.83
SHH-205ENST00000472308 TUBGCP6Q96RT7 1819 aa26.46■■□□□ 1.83
SHH-205ENST00000472308 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.46■■□□□ 1.83
SHH-205ENST00000472308 KLHL34Q8N239 644 aa26.46■■□□□ 1.83
SHH-205ENST00000472308 ANKRD24Q8TF21 1146 aa26.46■■□□□ 1.83
SHH-205ENST00000472308 SBNO2Q9Y2G9 1366 aa26.46■■□□□ 1.83
SHH-205ENST00000472308 IFFO2Q5TF58 517 aa26.45■■□□□ 1.82
SHH-205ENST00000472308 NME9Q86XW9 330 aa26.45■■□□□ 1.82
SHH-205ENST00000472308 NLGN2Q8NFZ4 835 aa26.45■■□□□ 1.82
SHH-205ENST00000472308 SLC27A3Q5K4L6 730 aa26.44■■□□□ 1.82
SHH-205ENST00000472308 POLD1P28340 1107 aa26.43■■□□□ 1.82
SHH-205ENST00000472308 PELP1Q8IZL8 1130 aaKnown RBP26.42■■□□□ 1.82
SHH-205ENST00000472308 ROCK2O75116 1388 aaKnown RBP26.42■■□□□ 1.82
SHH-205ENST00000472308 KCNQ4P56696 695 aa26.41■■□□□ 1.82
SHH-205ENST00000472308 KAT6BQ8WYB5 2073 aa26.38■■□□□ 1.81
SHH-205ENST00000472308 NSD2O96028 1365 aa26.38■■□□□ 1.81
SHH-205ENST00000472308 YBX3P16989 372 aaKnown RBP eCLIP26.38■■□□□ 1.81
SHH-205ENST00000472308 TFCP2L1Q9NZI6 479 aa26.38■■□□□ 1.81
SHH-205ENST00000472308 DDX54Q8TDD1 881 aaKnown RBP26.37■■□□□ 1.81
SHH-205ENST00000472308 LY75O60449 1722 aa26.36■■□□□ 1.81
SHH-205ENST00000472308 DOT1LQ8TEK3 1739 aa26.36■■□□□ 1.81
SHH-205ENST00000472308 ANKRD36BQ8N2N9 1353 aa26.34■■□□□ 1.81
SHH-205ENST00000472308 EDC4Q6P2E9 1401 aaKnown RBP26.33■■□□□ 1.81
SHH-205ENST00000472308 PRIM1P49642 420 aaKnown RBP26.33■■□□□ 1.81
SHH-205ENST00000472308 FAM208AQ9UK61 1670 aaKnown RBP26.33■■□□□ 1.81
SHH-205ENST00000472308 IP6K1Q92551 441 aa26.31■■□□□ 1.8
SHH-205ENST00000472308 SYTL4Q96C24 671 aaPredicted RBP26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms