RNA–Protein interactions for RNA: ENST00000472224.1

CLRN1-205, Transcript of clarin 1, humanhuman

TSL 3

Gene CLRN1, Length 606 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1-205ENST00000472224 TESK2Q96S53 571 aa16.65■□□□□ 0.26
CLRN1-205ENST00000472224 PRDM11Q9NQV5 511 aa16.65■□□□□ 0.26
CLRN1-205ENST00000472224 KIAA0232Q92628 1395 aa16.64■□□□□ 0.26
CLRN1-205ENST00000472224 SENP3-EIF4A1A0A087X0R7 540 aa16.64■□□□□ 0.25
CLRN1-205ENST00000472224 CHRNA2Q15822 529 aa16.64■□□□□ 0.25
CLRN1-205ENST00000472224 CHD4Q14839 1912 aa16.64■□□□□ 0.25
CLRN1-205ENST00000472224 PEAK1Q9H792 1746 aa16.64■□□□□ 0.25
CLRN1-205ENST00000472224 SBF2Q86WG5 1849 aa16.63■□□□□ 0.25
CLRN1-205ENST00000472224 PARP4Q9UKK3 1724 aaKnown RBP16.63■□□□□ 0.25
CLRN1-205ENST00000472224 PIK3C2AO00443 1686 aa16.62■□□□□ 0.25
CLRN1-205ENST00000472224 TMF1P82094 1093 aa16.62■□□□□ 0.25
CLRN1-205ENST00000472224 STRN4Q9NRL3 753 aa16.62■□□□□ 0.25
CLRN1-205ENST00000472224 ABTB2Q8N961 1025 aa16.61■□□□□ 0.25
CLRN1-205ENST00000472224 PDGFDQ9GZP0 370 aaPredicted RBP16.61■□□□□ 0.25
CLRN1-205ENST00000472224 USP35Q9P2H5 1018 aa16.61■□□□□ 0.25
CLRN1-205ENST00000472224 LMO7Q8WWI1 1683 aa16.61■□□□□ 0.25
CLRN1-205ENST00000472224 KTN1Q86UP2 1357 aaKnown RBP16.61■□□□□ 0.25
CLRN1-205ENST00000472224 SSH2Q76I76 1423 aa16.61■□□□□ 0.25
CLRN1-205ENST00000472224 CEP350Q5VT06 3117 aa16.61■□□□□ 0.25
CLRN1-205ENST00000472224 BARGINQ6ZT62 677 aa16.6■□□□□ 0.25
CLRN1-205ENST00000472224 ANO8Q9HCE9 1232 aaPredicted RBP16.6■□□□□ 0.25
CLRN1-205ENST00000472224 U3KPZ7 1027 aaPredicted RBP16.6■□□□□ 0.25
CLRN1-205ENST00000472224 SLC24A1O60721 1099 aa16.59■□□□□ 0.25
CLRN1-205ENST00000472224 C1QTNF8P60827 252 aa16.59■□□□□ 0.25
CLRN1-205ENST00000472224 PDE3BQ13370 1112 aa16.59■□□□□ 0.25
CLRN1-205ENST00000472224 SLC12A5Q9H2X9 1139 aa16.59■□□□□ 0.25
CLRN1-205ENST00000472224 HDGFL2Q7Z4V5 671 aaPredicted RBP16.58■□□□□ 0.24
CLRN1-205ENST00000472224 BRD4O60885 1362 aaPredicted RBP16.58■□□□□ 0.24
CLRN1-205ENST00000472224 CD163L1Q9NR16 1453 aa16.57■□□□□ 0.24
CLRN1-205ENST00000472224 CPSF1Q10570 1443 aaKnown RBP16.57■□□□□ 0.24
CLRN1-205ENST00000472224 EIF4G2P78344 907 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLRN1-205ENST00000472224 ZNF692Q9BU19 519 aaPredicted RBP16.57■□□□□ 0.24
CLRN1-205ENST00000472224 LRRC37A3O60309 1634 aa16.56■□□□□ 0.24
CLRN1-205ENST00000472224 A0A1W2PP64 1363 aa16.56■□□□□ 0.24
CLRN1-205ENST00000472224 TTC21BQ7Z4L5 1316 aa16.56■□□□□ 0.24
CLRN1-205ENST00000472224 HSPA5P11021 654 aaKnown RBP16.56■□□□□ 0.24
CLRN1-205ENST00000472224 PTGER2P43116 358 aa16.56■□□□□ 0.24
CLRN1-205ENST00000472224 ZC3H6P61129 1189 aaKnown RBP16.56■□□□□ 0.24
CLRN1-205ENST00000472224 LARP1Q6PKG0 1096 aaKnown RBP16.56■□□□□ 0.24
CLRN1-205ENST00000472224 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLRN1-205ENST00000472224 PUS7Q96PZ0 661 aaKnown RBP16.56■□□□□ 0.24
CLRN1-205ENST00000472224 POLR3GLQ9BT43 218 aa16.56■□□□□ 0.24
CLRN1-205ENST00000472224 RNF39Q9H2S5 420 aa16.56■□□□□ 0.24
CLRN1-205ENST00000472224 NLRP6P59044 892 aa16.55■□□□□ 0.24
CLRN1-205ENST00000472224 CDCA8Q53HL2 280 aa16.55■□□□□ 0.24
CLRN1-205ENST00000472224 NLRP13Q86W25 1043 aa16.55■□□□□ 0.24
CLRN1-205ENST00000472224 TERF2IPQ9NYB0 399 aa16.55■□□□□ 0.24
CLRN1-205ENST00000472224 USP19O94966 1318 aa16.54■□□□□ 0.24
CLRN1-205ENST00000472224 TTC21AQ8NDW8 1320 aa16.54■□□□□ 0.24
CLRN1-205ENST00000472224 ZBTB7CA1YPR0 619 aa16.54■□□□□ 0.24
CLRN1-205ENST00000472224 ZBTB7AO95365 584 aa16.54■□□□□ 0.24
CLRN1-205ENST00000472224 SOX12O15370 315 aa16.53■□□□□ 0.24
CLRN1-205ENST00000472224 TCP11L2Q8N4U5 519 aa16.53■□□□□ 0.24
CLRN1-205ENST00000472224 EDC4Q6P2E9 1401 aaKnown RBP16.53■□□□□ 0.24
CLRN1-205ENST00000472224 WNK3Q9BYP7 1800 aa16.52■□□□□ 0.24
CLRN1-205ENST00000472224 SLIT3O75094 1523 aa16.52■□□□□ 0.24
CLRN1-205ENST00000472224 PTF1AQ7RTS3 328 aa16.52■□□□□ 0.24
CLRN1-205ENST00000472224 OVOS2A0A0G2JMS6 1433 aa16.52■□□□□ 0.23
CLRN1-205ENST00000472224 OVOS2A0A0J9YW53 1432 aa16.52■□□□□ 0.23
CLRN1-205ENST00000472224 OVOS2Q6IE36 1432 aa16.52■□□□□ 0.23
CLRN1-205ENST00000472224 PLSCR1O15162 318 aa16.51■□□□□ 0.23
CLRN1-205ENST00000472224 FHDC1Q9C0D6 1143 aaPredicted RBP16.51■□□□□ 0.23
CLRN1-205ENST00000472224 GOLGB1Q14789 3259 aaKnown RBP16.51■□□□□ 0.23
CLRN1-205ENST00000472224 ANKRD36BQ8N2N9 1353 aa16.51■□□□□ 0.23
CLRN1-205ENST00000472224 USP54Q70EL1 1684 aa16.5■□□□□ 0.23
CLRN1-205ENST00000472224 KIF20BQ96Q89 1820 aa16.5■□□□□ 0.23
CLRN1-205ENST00000472224 EVA1CP58658 441 aa16.5■□□□□ 0.23
CLRN1-205ENST00000472224 NME9Q86XW9 330 aa16.5■□□□□ 0.23
CLRN1-205ENST00000472224 PROM2Q8N271 834 aa16.5■□□□□ 0.23
CLRN1-205ENST00000472224 SYT17Q9BSW7 474 aa16.5■□□□□ 0.23
CLRN1-205ENST00000472224 ATF5Q9Y2D1 282 aaPredicted RBP16.5■□□□□ 0.23
CLRN1-205ENST00000472224 COL5A2P05997 1499 aaPredicted RBP16.49■□□□□ 0.23
CLRN1-205ENST00000472224 GCP02774 474 aa16.49■□□□□ 0.23
CLRN1-205ENST00000472224 LTN1O94822 1766 aa16.48■□□□□ 0.23
CLRN1-205ENST00000472224 CPDO75976 1380 aa16.48■□□□□ 0.23
CLRN1-205ENST00000472224 RGPD5Q99666 1765 aa16.47■□□□□ 0.23
CLRN1-205ENST00000472224 MYCNP04198 464 aaPredicted RBP16.47■□□□□ 0.23
CLRN1-205ENST00000472224 SGIP1Q9BQI5 828 aa16.47■□□□□ 0.23
CLRN1-205ENST00000472224 THRAP3Q9Y2W1 955 aaKnown RBP16.47■□□□□ 0.23
CLRN1-205ENST00000472224 NFAT5O94916 1531 aa16.46■□□□□ 0.23
CLRN1-205ENST00000472224 SHANK3Q9BYB0 1731 aa16.45■□□□□ 0.22
CLRN1-205ENST00000472224 BCL11BQ9C0K0 894 aaPredicted RBP16.45■□□□□ 0.22
CLRN1-205ENST00000472224 CRB1P82279 1406 aa16.45■□□□□ 0.22
CLRN1-205ENST00000472224 NSD3Q9BZ95 1437 aa16.45■□□□□ 0.22
CLRN1-205ENST00000472224 USP31Q70CQ4 1352 aa16.44■□□□□ 0.22
CLRN1-205ENST00000472224 C11orf95C9JLR9 678 aaPredicted RBP16.44■□□□□ 0.22
CLRN1-205ENST00000472224 KCNH5Q8NCM2 988 aa16.44■□□□□ 0.22
CLRN1-205ENST00000472224 COL18A1P39060 1754 aa16.43■□□□□ 0.22
CLRN1-205ENST00000472224 PAPPAQ13219 1627 aa16.42■□□□□ 0.22
CLRN1-205ENST00000472224 MAP3K5Q99683 1374 aa16.4■□□□□ 0.22
CLRN1-205ENST00000472224 BCL9O00512 1426 aa16.4■□□□□ 0.22
CLRN1-205ENST00000472224 GIGYF1O75420 1035 aaPredicted RBP16.4■□□□□ 0.22
CLRN1-205ENST00000472224 SLC15A2Q16348 729 aa16.4■□□□□ 0.22
CLRN1-205ENST00000472224 COG3Q96JB2 828 aa16.4■□□□□ 0.22
CLRN1-205ENST00000472224 MTFR1LQ9H019 292 aa16.4■□□□□ 0.22
CLRN1-205ENST00000472224 AATKQ6ZMQ8 1374 aa16.39■□□□□ 0.21
CLRN1-205ENST00000472224 TXNRD1Q16881 649 aa16.39■□□□□ 0.21
CLRN1-205ENST00000472224 MARCH10Q8NA82 808 aaPredicted RBP16.39■□□□□ 0.21
CLRN1-205ENST00000472224 GGNBP2Q9H3C7 697 aa16.39■□□□□ 0.21
CLRN1-205ENST00000472224 STK32BQ9NY57 414 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms