RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 KCTD15Q96SI1 283 aaPredicted RBP12.44□□□□□ -0.42
CCDC39-202ENST00000471307 EMILIN1Q9Y6C2 1016 aa12.44□□□□□ -0.42
CCDC39-202ENST00000471307 POTECB2RU33 542 aa12.43□□□□□ -0.42
CCDC39-202ENST00000471307 ZNF592Q92610 1267 aa12.43□□□□□ -0.42
CCDC39-202ENST00000471307 ZIC2O95409 532 aaPredicted RBP12.42□□□□□ -0.42
CCDC39-202ENST00000471307 DHX9Q08211 1270 aaKnown RBP12.42□□□□□ -0.42
CCDC39-202ENST00000471307 DZIP3Q86Y13 1208 aaKnown RBP12.42□□□□□ -0.42
CCDC39-202ENST00000471307 MCCD1P59942 119 aaPredicted RBP12.41□□□□□ -0.42
CCDC39-202ENST00000471307 TMEM132AQ24JP5 1023 aa12.41□□□□□ -0.42
CCDC39-202ENST00000471307 ITPKCQ96DU7 683 aa12.41□□□□□ -0.42
CCDC39-202ENST00000471307 TRIM47Q96LD4 638 aa12.41□□□□□ -0.42
CCDC39-202ENST00000471307 C11orf95C9JLR9 678 aaPredicted RBP12.4□□□□□ -0.42
CCDC39-202ENST00000471307 GPR37L1O60883 481 aa12.4□□□□□ -0.42
CCDC39-202ENST00000471307 FBXO45P0C2W1 286 aa12.4□□□□□ -0.42
CCDC39-202ENST00000471307 ZNF330Q9Y3S2 320 aaPredicted RBP12.4□□□□□ -0.42
CCDC39-202ENST00000471307 NR1H3Q13133 447 aa12.39□□□□□ -0.43
CCDC39-202ENST00000471307 TRIM46Q7Z4K8 759 aa12.39□□□□□ -0.43
CCDC39-202ENST00000471307 PGPEP1Q9NXJ5 209 aa12.39□□□□□ -0.43
CCDC39-202ENST00000471307 SEPT12Q8IYM1 358 aa12.38□□□□□ -0.43
CCDC39-202ENST00000471307 BMP1P13497 986 aa12.37□□□□□ -0.43
CCDC39-202ENST00000471307 SCARF1Q14162 830 aa12.37□□□□□ -0.43
CCDC39-202ENST00000471307 INTS6LQ5JSJ4 861 aaKnown RBP12.37□□□□□ -0.43
CCDC39-202ENST00000471307 PPP1R26Q5T8A7 1209 aaPredicted RBP12.37□□□□□ -0.43
CCDC39-202ENST00000471307 MRPL14Q6P1L8 145 aaKnown RBP12.37□□□□□ -0.43
CCDC39-202ENST00000471307 TRIM52Q96A61 297 aa12.37□□□□□ -0.43
CCDC39-202ENST00000471307 ZFAND3Q9H8U3 227 aa12.37□□□□□ -0.43
CCDC39-202ENST00000471307 ESPNB1AK53 854 aa12.36□□□□□ -0.43
CCDC39-202ENST00000471307 CCDC125Q86Z20 511 aa12.36□□□□□ -0.43
CCDC39-202ENST00000471307 MCM6Q14566 821 aa12.35□□□□□ -0.43
CCDC39-202ENST00000471307 MEIOBQ8N635 442 aa12.35□□□□□ -0.43
CCDC39-202ENST00000471307 TBC1D2BQ9UPU7 963 aa12.34□□□□□ -0.43
CCDC39-202ENST00000471307 PCDHB9Q9Y5E1 797 aa12.34□□□□□ -0.43
CCDC39-202ENST00000471307 UPP2O95045 317 aa12.33□□□□□ -0.44
CCDC39-202ENST00000471307 ZFP42Q96MM3 310 aa12.32□□□□□ -0.44
CCDC39-202ENST00000471307 Q6ZVU0 165 aa12.31□□□□□ -0.44
CCDC39-202ENST00000471307 SNRPBP14678 240 aaKnown RBP12.3□□□□□ -0.44
CCDC39-202ENST00000471307 RNF20Q5VTR2 975 aa12.3□□□□□ -0.44
CCDC39-202ENST00000471307 ZNF775Q96BV0 537 aaPredicted RBP12.3□□□□□ -0.44
CCDC39-202ENST00000471307 TSEN34Q9BSV6 310 aaKnown RBP12.3□□□□□ -0.44
CCDC39-202ENST00000471307 LINC00528Q8N1L1 170 aa12.29□□□□□ -0.44
CCDC39-202ENST00000471307 PURBQ96QR8 312 aaKnown RBP12.29□□□□□ -0.44
CCDC39-202ENST00000471307 FLIIQ13045 1269 aa12.28□□□□□ -0.44
CCDC39-202ENST00000471307 ERVH48-1M5A8F1 160 aa12.27□□□□□ -0.45
CCDC39-202ENST00000471307 GIGYF1O75420 1035 aaPredicted RBP12.26□□□□□ -0.45
CCDC39-202ENST00000471307 IRF5Q13568 498 aa12.26□□□□□ -0.45
CCDC39-202ENST00000471307 BMP2P12643 396 aa12.25□□□□□ -0.45
CCDC39-202ENST00000471307 EIF4G2P78344 907 aaKnown RBP eCLIP12.25□□□□□ -0.45
CCDC39-202ENST00000471307 WASHC4Q2M389 1173 aa12.25□□□□□ -0.45
CCDC39-202ENST00000471307 ZNF784Q8NCA9 323 aaPredicted RBP12.25□□□□□ -0.45
CCDC39-202ENST00000471307 GDPD2Q9HCC8 539 aa12.25□□□□□ -0.45
CCDC39-202ENST00000471307 RAB15P59190 212 aa12.24□□□□□ -0.45
CCDC39-202ENST00000471307 CBLBQ13191 982 aa12.23□□□□□ -0.45
CCDC39-202ENST00000471307 TMPRSS4Q9NRS4 437 aa12.23□□□□□ -0.45
CCDC39-202ENST00000471307 ABL2P42684 1182 aa12.22□□□□□ -0.45
CCDC39-202ENST00000471307 C6orf118Q5T5N4 469 aa12.22□□□□□ -0.45
CCDC39-202ENST00000471307 LILRA1O75019 489 aa12.21□□□□□ -0.45
CCDC39-202ENST00000471307 COG6Q9Y2V7 657 aa12.21□□□□□ -0.45
CCDC39-202ENST00000471307 SPINT1O43278 529 aa12.2□□□□□ -0.46
CCDC39-202ENST00000471307 SOS2Q07890 1332 aaPredicted RBP12.19□□□□□ -0.46
CCDC39-202ENST00000471307 ADH1AP07327 375 aa12.19□□□□□ -0.46
CCDC39-202ENST00000471307 SOX11P35716 441 aa12.19□□□□□ -0.46
CCDC39-202ENST00000471307 WWC1Q8IX03 1113 aa12.19□□□□□ -0.46
CCDC39-202ENST00000471307 NPAS3Q8IXF0 933 aa12.19□□□□□ -0.46
CCDC39-202ENST00000471307 CEP126Q9P2H0 1117 aa12.19□□□□□ -0.46
CCDC39-202ENST00000471307 RAD21O60216 631 aa12.17□□□□□ -0.46
CCDC39-202ENST00000471307 ERVK-9P63128 1117 aa12.17□□□□□ -0.46
CCDC39-202ENST00000471307 MAN1A2O60476 641 aa12.16□□□□□ -0.46
CCDC39-202ENST00000471307 VAC14Q08AM6 782 aa12.16□□□□□ -0.46
CCDC39-202ENST00000471307 CC2D2BQ6DHV5 1058 aa12.16□□□□□ -0.46
CCDC39-202ENST00000471307 TREML4Q6UXN2 200 aa12.16□□□□□ -0.46
CCDC39-202ENST00000471307 CYLDQ9NQC7 956 aa12.16□□□□□ -0.46
CCDC39-202ENST00000471307 NXF1Q9UBU9 619 aaKnown RBP12.16□□□□□ -0.46
CCDC39-202ENST00000471307 TTLL8A6PVC2 850 aa12.15□□□□□ -0.46
CCDC39-202ENST00000471307 TERTO14746 1132 aaKnown RBP12.15□□□□□ -0.46
CCDC39-202ENST00000471307 UBTFP17480 764 aaKnown RBP12.15□□□□□ -0.46
CCDC39-202ENST00000471307 ADD1P35611 737 aaKnown RBP12.15□□□□□ -0.46
CCDC39-202ENST00000471307 RELBQ01201 579 aa12.14□□□□□ -0.47
CCDC39-202ENST00000471307 AGBL1Q96MI9 1066 aa12.14□□□□□ -0.47
CCDC39-202ENST00000471307 PTGIRP43119 386 aa12.13□□□□□ -0.47
CCDC39-202ENST00000471307 NFX1Q12986 1120 aaKnown RBP12.13□□□□□ -0.47
CCDC39-202ENST00000471307 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.13□□□□□ -0.47
CCDC39-202ENST00000471307 PCDHB11Q9Y5F2 797 aa12.13□□□□□ -0.47
CCDC39-202ENST00000471307 WFS1O76024 890 aa12.12□□□□□ -0.47
CCDC39-202ENST00000471307 DNMT3LQ9UJW3 386 aa12.12□□□□□ -0.47
CCDC39-202ENST00000471307 ATP5J2-PTCD1G3V325 749 aa12.11□□□□□ -0.47
CCDC39-202ENST00000471307 SEMA3FQ13275 785 aa12.11□□□□□ -0.47
CCDC39-202ENST00000471307 SLFNL1Q499Z3 407 aa12.11□□□□□ -0.47
CCDC39-202ENST00000471307 LCE2AQ5TA79 106 aaPredicted RBP12.11□□□□□ -0.47
CCDC39-202ENST00000471307 KDF1Q8NAX2 398 aaPredicted RBP12.11□□□□□ -0.47
CCDC39-202ENST00000471307 SLC16A10Q8TF71 515 aa12.11□□□□□ -0.47
CCDC39-202ENST00000471307 CYP2U1Q7Z449 544 aa12.1□□□□□ -0.47
CCDC39-202ENST00000471307 PHTF2Q8N3S3 785 aa12.1□□□□□ -0.47
CCDC39-202ENST00000471307 POM121Q96HA1 1249 aa12.1□□□□□ -0.47
CCDC39-202ENST00000471307 ESF1Q9H501 851 aaKnown RBP12.1□□□□□ -0.47
CCDC39-202ENST00000471307 SOBPA7XYQ1 873 aa12.09□□□□□ -0.47
CCDC39-202ENST00000471307 CHIC2Q9UKJ5 165 aa12.09□□□□□ -0.47
CCDC39-202ENST00000471307 RNF135Q8IUD6 432 aa12.08□□□□□ -0.48
CCDC39-202ENST00000471307 CCDC85AQ96PX6 553 aaPredicted RBP12.08□□□□□ -0.48
CCDC39-202ENST00000471307 INSM2Q96T92 566 aaPredicted RBP12.08□□□□□ -0.48
CCDC39-202ENST00000471307 ZNF395Q9H8N7 513 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms