RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 EDC4Q6P2E9 1401 aaKnown RBP23.1■■□□□ 1.29
COL9A3-208ENST00000469802 FAM196AQ6ZSG2 479 aa23.09■■□□□ 1.29
COL9A3-208ENST00000469802 A0A1W2PP64 1363 aa23.09■■□□□ 1.29
COL9A3-208ENST00000469802 LRP5O75197 1615 aa23.08■■□□□ 1.29
COL9A3-208ENST00000469802 ZBTB7CA1YPR0 619 aa23.08■■□□□ 1.29
COL9A3-208ENST00000469802 AXIN2Q9Y2T1 843 aa23.08■■□□□ 1.29
COL9A3-208ENST00000469802 NINLQ9Y2I6 1382 aa23.08■■□□□ 1.29
COL9A3-208ENST00000469802 WDR17Q8IZU2 1322 aa23.08■■□□□ 1.28
COL9A3-208ENST00000469802 SLC12A5Q9H2X9 1139 aa23.07■■□□□ 1.28
COL9A3-208ENST00000469802 ST20-MTHFSA0A0A6YYL1 179 aa23.06■■□□□ 1.28
COL9A3-208ENST00000469802 RGPD3A6NKT7 1758 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-208ENST00000469802 RGPD4Q7Z3J3 1758 aa23.06■■□□□ 1.28
COL9A3-208ENST00000469802 OVOS2A0A0J9YW53 1432 aa23.06■■□□□ 1.28
COL9A3-208ENST00000469802 OVOS2Q6IE36 1432 aa23.06■■□□□ 1.28
COL9A3-208ENST00000469802 NUP188Q5SRE5 1749 aa23.05■■□□□ 1.28
COL9A3-208ENST00000469802 PDE3BQ13370 1112 aa23.04■■□□□ 1.28
COL9A3-208ENST00000469802 NME9Q86XW9 330 aa23.04■■□□□ 1.28
COL9A3-208ENST00000469802 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.04■■□□□ 1.28
COL9A3-208ENST00000469802 TMC1Q8TDI8 760 aa23.04■■□□□ 1.28
COL9A3-208ENST00000469802 EN1Q05925 392 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-208ENST00000469802 HDGFL2Q7Z4V5 671 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-208ENST00000469802 USP47Q96K76 1375 aa23.02■■□□□ 1.28
COL9A3-208ENST00000469802 SOX12O15370 315 aa23.02■■□□□ 1.28
COL9A3-208ENST00000469802 TRIM37O94972 964 aa23.02■■□□□ 1.28
COL9A3-208ENST00000469802 TERF2IPQ9NYB0 399 aa23.02■■□□□ 1.28
COL9A3-208ENST00000469802 PARD3Q8TEW0 1356 aa23.01■■□□□ 1.27
COL9A3-208ENST00000469802 OVOS2A0A0G2JMS6 1433 aa23.01■■□□□ 1.27
COL9A3-208ENST00000469802 TOM1L2Q6ZVM7 507 aa23.01■■□□□ 1.27
COL9A3-208ENST00000469802 MYOM1P52179 1685 aa23■■□□□ 1.27
COL9A3-208ENST00000469802 FAM208AQ9UK61 1670 aaKnown RBP23■■□□□ 1.27
COL9A3-208ENST00000469802 SLC24A1O60721 1099 aa23■■□□□ 1.27
COL9A3-208ENST00000469802 CLSPNQ9HAW4 1339 aa22.99■■□□□ 1.27
COL9A3-208ENST00000469802 CAMKK2Q96RR4 588 aa22.98■■□□□ 1.27
COL9A3-208ENST00000469802 CARD10Q9BWT7 1032 aa22.98■■□□□ 1.27
COL9A3-208ENST00000469802 BCL9O00512 1426 aa22.97■■□□□ 1.27
COL9A3-208ENST00000469802 KIF20BQ96Q89 1820 aa22.96■■□□□ 1.27
COL9A3-208ENST00000469802 C11orf95C9JLR9 678 aaPredicted RBP22.96■■□□□ 1.27
COL9A3-208ENST00000469802 EZH2Q15910 746 aaKnown RBP22.96■■□□□ 1.27
COL9A3-208ENST00000469802 CDCA7Q9BWT1 371 aaPredicted RBP22.96■■□□□ 1.27
COL9A3-208ENST00000469802 ERBB3P21860 1342 aa22.96■■□□□ 1.27
COL9A3-208ENST00000469802 ANKRD36BQ8N2N9 1353 aa22.96■■□□□ 1.27
COL9A3-208ENST00000469802 CCDC7Q96M83 1385 aa22.96■■□□□ 1.27
COL9A3-208ENST00000469802 DDB1Q16531 1140 aa22.95■■□□□ 1.26
COL9A3-208ENST00000469802 TIMELESSQ9UNS1 1208 aa22.95■■□□□ 1.26
COL9A3-208ENST00000469802 TNS2Q63HR2 1409 aa22.94■■□□□ 1.26
COL9A3-208ENST00000469802 APBA3O96018 575 aa22.94■■□□□ 1.26
COL9A3-208ENST00000469802 PSDA5PKW4 1024 aaPredicted RBP22.92■■□□□ 1.26
COL9A3-208ENST00000469802 CSB-PGBD3P0DP91 1061 aa22.92■■□□□ 1.26
COL9A3-208ENST00000469802 NHSQ6T4R5 1651 aa22.91■■□□□ 1.26
COL9A3-208ENST00000469802 TMF1P82094 1093 aa22.9■■□□□ 1.26
COL9A3-208ENST00000469802 RGPD2P0DJD1 1756 aa22.9■■□□□ 1.26
COL9A3-208ENST00000469802 MARCH10Q8NA82 808 aaPredicted RBP22.89■■□□□ 1.25
COL9A3-208ENST00000469802 R3HDM1Q15032 1099 aaKnown RBP22.86■■□□□ 1.25
COL9A3-208ENST00000469802 ANKRD24Q8TF21 1146 aa22.85■■□□□ 1.25
COL9A3-208ENST00000469802 PCGF6Q9BYE7 350 aa22.85■■□□□ 1.25
COL9A3-208ENST00000469802 SHANK3Q9BYB0 1731 aa22.85■■□□□ 1.25
COL9A3-208ENST00000469802 IP6K1Q92551 441 aa22.84■■□□□ 1.25
COL9A3-208ENST00000469802 COG3Q96JB2 828 aa22.84■■□□□ 1.25
COL9A3-208ENST00000469802 CDCA8Q53HL2 280 aa22.83■■□□□ 1.25
COL9A3-208ENST00000469802 BCL11BQ9C0K0 894 aaPredicted RBP22.83■■□□□ 1.25
COL9A3-208ENST00000469802 NLRP2Q9NX02 1062 aa22.83■■□□□ 1.25
COL9A3-208ENST00000469802 MAP3K19Q56UN5 1328 aa22.82■■□□□ 1.24
COL9A3-208ENST00000469802 RTL1A6NKG5 1358 aa22.82■■□□□ 1.24
COL9A3-208ENST00000469802 EXOC5O00471 708 aa22.82■■□□□ 1.24
COL9A3-208ENST00000469802 PTF1AQ7RTS3 328 aa22.82■■□□□ 1.24
COL9A3-208ENST00000469802 BTAF1O14981 1849 aa22.82■■□□□ 1.24
COL9A3-208ENST00000469802 ANKRD26Q9UPS8 1709 aa22.82■■□□□ 1.24
COL9A3-208ENST00000469802 PLSCR1O15162 318 aa22.81■■□□□ 1.24
COL9A3-208ENST00000469802 CASZ1Q86V15 1759 aa22.81■■□□□ 1.24
COL9A3-208ENST00000469802 FYB1O15117 783 aa22.8■■□□□ 1.24
COL9A3-208ENST00000469802 IL2RBP14784 551 aa22.8■■□□□ 1.24
COL9A3-208ENST00000469802 HOXC9P31274 260 aa22.78■■□□□ 1.24
COL9A3-208ENST00000469802 FBLN1P23142 703 aa22.76■■□□□ 1.23
COL9A3-208ENST00000469802 PAPPAQ13219 1627 aa22.75■■□□□ 1.23
COL9A3-208ENST00000469802 NSD3Q9BZ95 1437 aa22.75■■□□□ 1.23
COL9A3-208ENST00000469802 DOT1LQ8TEK3 1739 aa22.75■■□□□ 1.23
COL9A3-208ENST00000469802 NBPF14Q5TI25 921 aa22.75■■□□□ 1.23
COL9A3-208ENST00000469802 GGNBP2Q9H3C7 697 aa22.75■■□□□ 1.23
COL9A3-208ENST00000469802 AMPHP49418 695 aa22.73■■□□□ 1.23
COL9A3-208ENST00000469802 PROM2Q8N271 834 aa22.73■■□□□ 1.23
COL9A3-208ENST00000469802 CARD14Q9BXL6 1004 aa22.73■■□□□ 1.23
COL9A3-208ENST00000469802 KAT6BQ8WYB5 2073 aa22.73■■□□□ 1.23
COL9A3-208ENST00000469802 MEGF6O75095 1541 aa22.72■■□□□ 1.23
COL9A3-208ENST00000469802 RRS1Q15050 365 aaKnown RBP22.72■■□□□ 1.23
COL9A3-208ENST00000469802 LTV1Q96GA3 475 aaPredicted RBP22.72■■□□□ 1.23
COL9A3-208ENST00000469802 KIF24Q5T7B8 1368 aa22.72■■□□□ 1.23
COL9A3-208ENST00000469802 MAP2P11137 1827 aaKnown RBP22.71■■□□□ 1.23
COL9A3-208ENST00000469802 KCNQ2O43526 872 aa22.71■■□□□ 1.23
COL9A3-208ENST00000469802 ANO8Q9HCE9 1232 aaPredicted RBP22.71■■□□□ 1.23
COL9A3-208ENST00000469802 FLT4P35916 1363 aa22.69■■□□□ 1.22
COL9A3-208ENST00000469802 SMG6Q86US8 1419 aaKnown RBP22.68■■□□□ 1.22
COL9A3-208ENST00000469802 INSRP06213 1382 aa22.68■■□□□ 1.22
COL9A3-208ENST00000469802 LY75O60449 1722 aa22.68■■□□□ 1.22
COL9A3-208ENST00000469802 TXNRD1Q16881 649 aa22.67■■□□□ 1.22
COL9A3-208ENST00000469802 PKD1L3Q7Z443 1732 aa22.67■■□□□ 1.22
COL9A3-208ENST00000469802 CCER1Q8TC90 406 aaPredicted RBP22.66■■□□□ 1.22
COL9A3-208ENST00000469802 ACSBG1Q96GR2 724 aa22.66■■□□□ 1.22
COL9A3-208ENST00000469802 QSER1Q2KHR3 1735 aa22.65■■□□□ 1.22
COL9A3-208ENST00000469802 NCAPD2Q15021 1401 aa22.65■■□□□ 1.22
COL9A3-208ENST00000469802 NBPF6Q5VWK0 638 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms