RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 ADAMTS2O95450 1211 aa20.56■□□□□ 0.88
NPHP4-205ENST00000466897 PPP2R1AP30153 589 aa20.56■□□□□ 0.88
NPHP4-205ENST00000466897 TNNT2P45379 298 aaPredicted RBP20.56■□□□□ 0.88
NPHP4-205ENST00000466897 RRS1Q15050 365 aaKnown RBP20.56■□□□□ 0.88
NPHP4-205ENST00000466897 INSRP06213 1382 aa20.56■□□□□ 0.88
NPHP4-205ENST00000466897 FBLN1P23142 703 aa20.55■□□□□ 0.88
NPHP4-205ENST00000466897 DIEXFQ68CQ4 756 aaKnown RBP20.55■□□□□ 0.88
NPHP4-205ENST00000466897 IP6K1Q92551 441 aa20.55■□□□□ 0.88
NPHP4-205ENST00000466897 COL5A2P05997 1499 aaPredicted RBP20.55■□□□□ 0.88
NPHP4-205ENST00000466897 HOXC9P31274 260 aa20.54■□□□□ 0.88
NPHP4-205ENST00000466897 EMILIN1Q9Y6C2 1016 aa20.54■□□□□ 0.88
NPHP4-205ENST00000466897 AMPHP49418 695 aa20.53■□□□□ 0.88
NPHP4-205ENST00000466897 CNGB1Q14028 1251 aaPredicted RBP20.53■□□□□ 0.88
NPHP4-205ENST00000466897 FNBP4Q8N3X1 1017 aaPredicted RBP20.53■□□□□ 0.88
NPHP4-205ENST00000466897 COL3A1P02461 1466 aaPredicted RBP20.52■□□□□ 0.88
NPHP4-205ENST00000466897 MTHFSP49914 203 aa20.52■□□□□ 0.88
NPHP4-205ENST00000466897 CHRNA2Q15822 529 aa20.52■□□□□ 0.88
NPHP4-205ENST00000466897 MEX3CQ5U5Q3 659 aaKnown RBP20.52■□□□□ 0.88
NPHP4-205ENST00000466897 RGS17Q9UGC6 210 aaPredicted RBP20.52■□□□□ 0.88
NPHP4-205ENST00000466897 RGPD1P0DJD0 1748 aa20.51■□□□□ 0.87
NPHP4-205ENST00000466897 PHF23Q9BUL5 403 aaPredicted RBP20.51■□□□□ 0.87
NPHP4-205ENST00000466897 BCL9LQ86UU0 1499 aa20.5■□□□□ 0.87
NPHP4-205ENST00000466897 RGPD2P0DJD1 1756 aa20.5■□□□□ 0.87
NPHP4-205ENST00000466897 C8orf37Q96NL8 207 aa20.5■□□□□ 0.87
NPHP4-205ENST00000466897 AXIN2Q9Y2T1 843 aa20.5■□□□□ 0.87
NPHP4-205ENST00000466897 ERBB3P21860 1342 aa20.5■□□□□ 0.87
NPHP4-205ENST00000466897 NGLY1Q96IV0 654 aa20.49■□□□□ 0.87
NPHP4-205ENST00000466897 BTG4Q9NY30 223 aa20.48■□□□□ 0.87
NPHP4-205ENST00000466897 WNK3Q9BYP7 1800 aa20.48■□□□□ 0.87
NPHP4-205ENST00000466897 ZBTB7CA1YPR0 619 aa20.47■□□□□ 0.87
NPHP4-205ENST00000466897 PPM1GO15355 546 aaPredicted RBP20.47■□□□□ 0.87
NPHP4-205ENST00000466897 HSP90AB2PQ58FF8 381 aa20.47■□□□□ 0.87
NPHP4-205ENST00000466897 UNC5CLQ8IV45 518 aa20.46■□□□□ 0.87
NPHP4-205ENST00000466897 CFAP53Q96M91 514 aa20.46■□□□□ 0.87
NPHP4-205ENST00000466897 AFF2P51816 1311 aa20.46■□□□□ 0.87
NPHP4-205ENST00000466897 WDR17Q8IZU2 1322 aa20.46■□□□□ 0.87
NPHP4-205ENST00000466897 NCAPD2Q15021 1401 aa20.45■□□□□ 0.86
NPHP4-205ENST00000466897 SOCS7O14512 581 aa20.45■□□□□ 0.86
NPHP4-205ENST00000466897 CRB1P82279 1406 aa20.44■□□□□ 0.86
NPHP4-205ENST00000466897 ANKRD24Q8TF21 1146 aa20.44■□□□□ 0.86
NPHP4-205ENST00000466897 ATRNO75882 1429 aa20.44■□□□□ 0.86
NPHP4-205ENST00000466897 USP21Q9UK80 565 aa20.43■□□□□ 0.86
NPHP4-205ENST00000466897 EIF4A2Q14240 407 aaKnown RBP20.42■□□□□ 0.86
NPHP4-205ENST00000466897 IL13P35225 146 aa20.41■□□□□ 0.86
NPHP4-205ENST00000466897 EVA1CP58658 441 aa20.41■□□□□ 0.86
NPHP4-205ENST00000466897 VPS72Q15906 364 aa20.41■□□□□ 0.86
NPHP4-205ENST00000466897 ZNF772Q68DY9 489 aaPredicted RBP20.41■□□□□ 0.86
NPHP4-205ENST00000466897 DIAPH1O60610 1272 aaKnown RBP20.4■□□□□ 0.86
NPHP4-205ENST00000466897 PARP4Q9UKK3 1724 aaKnown RBP20.39■□□□□ 0.86
NPHP4-205ENST00000466897 GLI3P10071 1580 aa20.39■□□□□ 0.85
NPHP4-205ENST00000466897 IGSF1Q8N6C5 1336 aa20.38■□□□□ 0.85
NPHP4-205ENST00000466897 LARP1Q6PKG0 1096 aaKnown RBP20.38■□□□□ 0.85
NPHP4-205ENST00000466897 POTEAQ6S8J7 498 aa20.38■□□□□ 0.85
NPHP4-205ENST00000466897 CARD10Q9BWT7 1032 aa20.38■□□□□ 0.85
NPHP4-205ENST00000466897 STRN4Q9NRL3 753 aa20.38■□□□□ 0.85
NPHP4-205ENST00000466897 TRPC5Q9UL62 973 aaPredicted RBP20.38■□□□□ 0.85
NPHP4-205ENST00000466897 PLEKHG2Q9H7P9 1386 aa20.37■□□□□ 0.85
NPHP4-205ENST00000466897 SPATA31A5Q5VU36 1347 aa20.37■□□□□ 0.85
NPHP4-205ENST00000466897 SPATA31A7Q8IWB4 1347 aa20.37■□□□□ 0.85
NPHP4-205ENST00000466897 CCER2I3L3R5 266 aa20.37■□□□□ 0.85
NPHP4-205ENST00000466897 CSB-PGBD3P0DP91 1061 aa20.37■□□□□ 0.85
NPHP4-205ENST00000466897 LTV1Q96GA3 475 aaPredicted RBP20.37■□□□□ 0.85
NPHP4-205ENST00000466897 KDRP35968 1356 aa20.36■□□□□ 0.85
NPHP4-205ENST00000466897 SPATA31A1Q5TZJ5 1347 aa20.36■□□□□ 0.85
NPHP4-205ENST00000466897 TOM1L2Q6ZVM7 507 aa20.36■□□□□ 0.85
NPHP4-205ENST00000466897 NUDCQ9Y266 331 aa20.36■□□□□ 0.85
NPHP4-205ENST00000466897 THRAP3Q9Y2W1 955 aaKnown RBP20.36■□□□□ 0.85
NPHP4-205ENST00000466897 THSD7AQ9UPZ6 1657 aa20.35■□□□□ 0.85
NPHP4-205ENST00000466897 EYA1Q99502 592 aa20.35■□□□□ 0.85
NPHP4-205ENST00000466897 NBPF6Q5VWK0 638 aa20.34■□□□□ 0.85
NPHP4-205ENST00000466897 NBPF4Q96M43 638 aa20.34■□□□□ 0.85
NPHP4-205ENST00000466897 PKD1L3Q7Z443 1732 aa20.33■□□□□ 0.85
NPHP4-205ENST00000466897 NLRP2Q9NX02 1062 aa20.33■□□□□ 0.85
NPHP4-205ENST00000466897 DISP2A7MBM2 1401 aa20.33■□□□□ 0.84
NPHP4-205ENST00000466897 BARGINQ6ZT62 677 aa20.32■□□□□ 0.84
NPHP4-205ENST00000466897 MIER1Q8N108 512 aa20.32■□□□□ 0.84
NPHP4-205ENST00000466897 TCP11L2Q8N4U5 519 aa20.32■□□□□ 0.84
NPHP4-205ENST00000466897 GJD4Q96KN9 370 aaPredicted RBP20.32■□□□□ 0.84
NPHP4-205ENST00000466897 QTRT2Q9H974 415 aaKnown RBP20.32■□□□□ 0.84
NPHP4-205ENST00000466897 MRS2Q9HD23 443 aa20.32■□□□□ 0.84
NPHP4-205ENST00000466897 CCDC184Q52MB2 194 aa20.31■□□□□ 0.84
NPHP4-205ENST00000466897 LRRC37A3O60309 1634 aa20.31■□□□□ 0.84
NPHP4-205ENST00000466897 SHANK3Q9BYB0 1731 aa20.3■□□□□ 0.84
NPHP4-205ENST00000466897 CDCA7Q9BWT1 371 aaPredicted RBP20.29■□□□□ 0.84
NPHP4-205ENST00000466897 MEGF6O75095 1541 aa20.28■□□□□ 0.84
NPHP4-205ENST00000466897 U2SURPO15042 1029 aaKnown RBP20.28■□□□□ 0.84
NPHP4-205ENST00000466897 ONECUT3O60422 494 aaPredicted RBP20.28■□□□□ 0.84
NPHP4-205ENST00000466897 CCDC9Q9Y3X0 531 aaKnown RBP20.28■□□□□ 0.84
NPHP4-205ENST00000466897 OVOS2A0A0G2JMS6 1433 aa20.27■□□□□ 0.84
NPHP4-205ENST00000466897 RBM6P78332 1123 aaKnown RBP20.27■□□□□ 0.84
NPHP4-205ENST00000466897 PNISRQ8TF01 805 aaKnown RBP20.27■□□□□ 0.84
NPHP4-205ENST00000466897 FCHSD2O94868 740 aa20.26■□□□□ 0.83
NPHP4-205ENST00000466897 U2AF1L5P0DN76 240 aaPredicted RBP20.26■□□□□ 0.83
NPHP4-205ENST00000466897 U2AF1Q01081 240 aaKnown RBP eCLIP20.26■□□□□ 0.83
NPHP4-205ENST00000466897 WDR43Q15061 677 aaKnown RBP eCLIP20.26■□□□□ 0.83
NPHP4-205ENST00000466897 SULT6B1Q6IMI4 303 aa20.26■□□□□ 0.83
NPHP4-205ENST00000466897 BRWD3Q6RI45 1802 aa20.25■□□□□ 0.83
NPHP4-205ENST00000466897 IL2RBP14784 551 aa20.25■□□□□ 0.83
NPHP4-205ENST00000466897 USHBP1Q8N6Y0 703 aa20.25■□□□□ 0.83
NPHP4-205ENST00000466897 USP35Q9P2H5 1018 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms