RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ZEB1P37275 1124 aaPredicted RBP16.06■□□□□ 0.16
CUX1-207ENST00000465461 USP35Q9P2H5 1018 aa16.06■□□□□ 0.16
CUX1-207ENST00000465461 RGPD5Q99666 1765 aa16.05■□□□□ 0.16
CUX1-207ENST00000465461 CGNL1Q0VF96 1302 aa16.05■□□□□ 0.16
CUX1-207ENST00000465461 RRS1Q15050 365 aaKnown RBP16.05■□□□□ 0.16
CUX1-207ENST00000465461 SPATA31A5Q5VU36 1347 aa16.04■□□□□ 0.16
CUX1-207ENST00000465461 SPATA31A7Q8IWB4 1347 aa16.04■□□□□ 0.16
CUX1-207ENST00000465461 CNGB1Q14028 1251 aaPredicted RBP16.04■□□□□ 0.16
CUX1-207ENST00000465461 LTN1O94822 1766 aa16.04■□□□□ 0.16
CUX1-207ENST00000465461 COL5A2P05997 1499 aaPredicted RBP16.03■□□□□ 0.16
CUX1-207ENST00000465461 MAP3K19Q56UN5 1328 aa16.03■□□□□ 0.16
CUX1-207ENST00000465461 TNNT2P45379 298 aaPredicted RBP16.03■□□□□ 0.16
CUX1-207ENST00000465461 FAM98CQ17RN3 349 aaKnown RBP16.03■□□□□ 0.16
CUX1-207ENST00000465461 KNSTRNQ9Y448 316 aa16.02■□□□□ 0.16
CUX1-207ENST00000465461 SPATA31A1Q5TZJ5 1347 aa16.01■□□□□ 0.15
CUX1-207ENST00000465461 A0A0G2JS52 829 aa16.01■□□□□ 0.15
CUX1-207ENST00000465461 CSB-PGBD3P0DP91 1061 aa16.01■□□□□ 0.15
CUX1-207ENST00000465461 MYT1Q01538 1121 aa16.01■□□□□ 0.15
CUX1-207ENST00000465461 LTV1Q96GA3 475 aaPredicted RBP16.01■□□□□ 0.15
CUX1-207ENST00000465461 CDK12Q9NYV4 1490 aaPredicted RBP16■□□□□ 0.15
CUX1-207ENST00000465461 PER1O15534 1290 aaPredicted RBP16■□□□□ 0.15
CUX1-207ENST00000465461 AMPHP49418 695 aa16■□□□□ 0.15
CUX1-207ENST00000465461 TOM1L2Q6ZVM7 507 aa16■□□□□ 0.15
CUX1-207ENST00000465461 SEPT12Q8IYM1 358 aa16■□□□□ 0.15
CUX1-207ENST00000465461 HOXC9P31274 260 aa15.99■□□□□ 0.15
CUX1-207ENST00000465461 IP6K1Q92551 441 aa15.99■□□□□ 0.15
CUX1-207ENST00000465461 EMILIN1Q9Y6C2 1016 aa15.99■□□□□ 0.15
CUX1-207ENST00000465461 SOCS7O14512 581 aa15.98■□□□□ 0.15
CUX1-207ENST00000465461 PPM1GO15355 546 aaPredicted RBP15.98■□□□□ 0.15
CUX1-207ENST00000465461 AMER1Q5JTC6 1135 aaPredicted RBP15.98■□□□□ 0.15
CUX1-207ENST00000465461 CC2D1BQ5T0F9 858 aaKnown RBP15.98■□□□□ 0.15
CUX1-207ENST00000465461 ANKRD24Q8TF21 1146 aa15.98■□□□□ 0.15
CUX1-207ENST00000465461 WDR17Q8IZU2 1322 aa15.97■□□□□ 0.15
CUX1-207ENST00000465461 CRB1P82279 1406 aa15.97■□□□□ 0.15
CUX1-207ENST00000465461 ONECUT3O60422 494 aaPredicted RBP15.97■□□□□ 0.15
CUX1-207ENST00000465461 MORC1Q86VD1 984 aa15.97■□□□□ 0.15
CUX1-207ENST00000465461 PEAK1Q9H792 1746 aa15.97■□□□□ 0.15
CUX1-207ENST00000465461 HSP90AB2PQ58FF8 381 aa15.96■□□□□ 0.15
CUX1-207ENST00000465461 TCP11L2Q8N4U5 519 aa15.96■□□□□ 0.15
CUX1-207ENST00000465461 ANKRD26Q9UPS8 1709 aa15.96■□□□□ 0.15
CUX1-207ENST00000465461 BRWD3Q6RI45 1802 aa15.96■□□□□ 0.14
CUX1-207ENST00000465461 ERBB3P21860 1342 aa15.95■□□□□ 0.14
CUX1-207ENST00000465461 NLRP2Q9NX02 1062 aa15.95■□□□□ 0.14
CUX1-207ENST00000465461 POLKQ9UBT6 870 aa15.95■□□□□ 0.14
CUX1-207ENST00000465461 FAM182BQ5T319 152 aa15.94■□□□□ 0.14
CUX1-207ENST00000465461 MAP2P11137 1827 aaKnown RBP15.94■□□□□ 0.14
CUX1-207ENST00000465461 NSD2O96028 1365 aa15.93■□□□□ 0.14
CUX1-207ENST00000465461 BARGINQ6ZT62 677 aa15.93■□□□□ 0.14
CUX1-207ENST00000465461 CARD10Q9BWT7 1032 aa15.93■□□□□ 0.14
CUX1-207ENST00000465461 ABCC6O95255 1503 aa15.93■□□□□ 0.14
CUX1-207ENST00000465461 BLMP54132 1417 aaPredicted RBP15.93■□□□□ 0.14
CUX1-207ENST00000465461 THSD7AQ9UPZ6 1657 aa15.92■□□□□ 0.14
CUX1-207ENST00000465461 RGPD2P0DJD1 1756 aa15.91■□□□□ 0.14
CUX1-207ENST00000465461 DDX10Q13206 875 aaKnown RBP15.91■□□□□ 0.14
CUX1-207ENST00000465461 KRT27Q7Z3Y8 459 aa15.91■□□□□ 0.14
CUX1-207ENST00000465461 USHBP1Q8N6Y0 703 aa15.91■□□□□ 0.14
CUX1-207ENST00000465461 THRAP3Q9Y2W1 955 aaKnown RBP15.91■□□□□ 0.14
CUX1-207ENST00000465461 RTL1A6NKG5 1358 aa15.9■□□□□ 0.14
CUX1-207ENST00000465461 FLT4P35916 1363 aa15.9■□□□□ 0.14
CUX1-207ENST00000465461 NBPF6Q5VWK0 638 aa15.89■□□□□ 0.13
CUX1-207ENST00000465461 NBPF4Q96M43 638 aa15.89■□□□□ 0.13
CUX1-207ENST00000465461 INSRP06213 1382 aa15.88■□□□□ 0.13
CUX1-207ENST00000465461 UPF1Q92900 1129 aaKnown RBP eCLIP15.88■□□□□ 0.13
CUX1-207ENST00000465461 PDE3BQ13370 1112 aa15.86■□□□□ 0.13
CUX1-207ENST00000465461 WNK3Q9BYP7 1800 aa15.86■□□□□ 0.13
CUX1-207ENST00000465461 KIF24Q5T7B8 1368 aa15.86■□□□□ 0.13
CUX1-207ENST00000465461 DISP2A7MBM2 1401 aa15.85■□□□□ 0.13
CUX1-207ENST00000465461 MTHFSP49914 203 aa15.85■□□□□ 0.13
CUX1-207ENST00000465461 EIF4A2Q14240 407 aaKnown RBP15.85■□□□□ 0.13
CUX1-207ENST00000465461 DDB1Q16531 1140 aa15.85■□□□□ 0.13
CUX1-207ENST00000465461 SMG6Q86US8 1419 aaKnown RBP15.85■□□□□ 0.13
CUX1-207ENST00000465461 LRRC37A3O60309 1634 aa15.84■□□□□ 0.13
CUX1-207ENST00000465461 IL2RBP14784 551 aa15.84■□□□□ 0.13
CUX1-207ENST00000465461 EYA1Q99502 592 aa15.84■□□□□ 0.13
CUX1-207ENST00000465461 PARP4Q9UKK3 1724 aaKnown RBP15.84■□□□□ 0.13
CUX1-207ENST00000465461 NPC1L1Q9UHC9 1359 aa15.84■□□□□ 0.13
CUX1-207ENST00000465461 FAM208AQ9UK61 1670 aaKnown RBP15.83■□□□□ 0.13
CUX1-207ENST00000465461 EXOC5O00471 708 aa15.83■□□□□ 0.12
CUX1-207ENST00000465461 ZNF316A6NFI3 1004 aaPredicted RBP15.82■□□□□ 0.12
CUX1-207ENST00000465461 MARCH10Q8NA82 808 aaPredicted RBP15.82■□□□□ 0.12
CUX1-207ENST00000465461 CDCA7Q9BWT1 371 aaPredicted RBP15.82■□□□□ 0.12
CUX1-207ENST00000465461 MEGF6O75095 1541 aa15.8■□□□□ 0.12
CUX1-207ENST00000465461 TRIM37O94972 964 aa15.79■□□□□ 0.12
CUX1-207ENST00000465461 PPP2R1AP30153 589 aa15.79■□□□□ 0.12
CUX1-207ENST00000465461 DDX54Q8TDD1 881 aaKnown RBP15.79■□□□□ 0.12
CUX1-207ENST00000465461 IL13P35225 146 aa15.78■□□□□ 0.12
CUX1-207ENST00000465461 FAM196AQ6ZSG2 479 aa15.78■□□□□ 0.12
CUX1-207ENST00000465461 RAPGEF4Q8WZA2 1011 aa15.78■□□□□ 0.12
CUX1-207ENST00000465461 TNS2Q63HR2 1409 aa15.77■□□□□ 0.12
CUX1-207ENST00000465461 TATP17735 454 aaPredicted RBP15.77■□□□□ 0.12
CUX1-207ENST00000465461 PTF1AQ7RTS3 328 aa15.77■□□□□ 0.12
CUX1-207ENST00000465461 DEFB132Q7Z7B7 95 aa15.76■□□□□ 0.11
CUX1-207ENST00000465461 AEBP1Q8IUX7 1158 aa15.76■□□□□ 0.11
CUX1-207ENST00000465461 ZCRB1Q8TBF4 217 aaKnown RBP15.76■□□□□ 0.11
CUX1-207ENST00000465461 IGSF1Q8N6C5 1336 aa15.75■□□□□ 0.11
CUX1-207ENST00000465461 ACSBG1Q96GR2 724 aa15.75■□□□□ 0.11
CUX1-207ENST00000465461 OVOS2A0A0G2JMS6 1433 aa15.75■□□□□ 0.11
CUX1-207ENST00000465461 DIAPH1O60610 1272 aaKnown RBP15.74■□□□□ 0.11
CUX1-207ENST00000465461 SULT6B1Q6IMI4 303 aa15.74■□□□□ 0.11
CUX1-207ENST00000465461 NCAPD2Q15021 1401 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms