RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 COL18A1P39060 1754 aa24.34■■□□□ 1.49
CPSF4-209ENST00000465132 RREB1Q92766 1687 aa24.34■■□□□ 1.49
CPSF4-209ENST00000465132 ARHGEF25Q86VW2 580 aa24.34■■□□□ 1.49
CPSF4-209ENST00000465132 CPSF1Q10570 1443 aaKnown RBP24.34■■□□□ 1.49
CPSF4-209ENST00000465132 SBNO2Q9Y2G9 1366 aa24.33■■□□□ 1.49
CPSF4-209ENST00000465132 KCNH5Q8NCM2 988 aa24.33■■□□□ 1.49
CPSF4-209ENST00000465132 OVOS2A0A0G2JMS6 1433 aa24.33■■□□□ 1.49
CPSF4-209ENST00000465132 OVOS2A0A0J9YW53 1432 aa24.33■■□□□ 1.49
CPSF4-209ENST00000465132 OVOS2Q6IE36 1432 aa24.33■■□□□ 1.49
CPSF4-209ENST00000465132 WDR17Q8IZU2 1322 aa24.33■■□□□ 1.48
CPSF4-209ENST00000465132 TTC21AQ8NDW8 1320 aa24.33■■□□□ 1.48
CPSF4-209ENST00000465132 DDB1Q16531 1140 aa24.32■■□□□ 1.48
CPSF4-209ENST00000465132 NBPF14Q5TI25 921 aa24.32■■□□□ 1.48
CPSF4-209ENST00000465132 NUP188Q5SRE5 1749 aa24.31■■□□□ 1.48
CPSF4-209ENST00000465132 PEAK1Q9H792 1746 aa24.31■■□□□ 1.48
CPSF4-209ENST00000465132 AKAP12Q02952 1782 aa24.3■■□□□ 1.48
CPSF4-209ENST00000465132 LRRC37A3O60309 1634 aa24.3■■□□□ 1.48
CPSF4-209ENST00000465132 ST20-MTHFSA0A0A6YYL1 179 aa24.29■■□□□ 1.48
CPSF4-209ENST00000465132 SOX12O15370 315 aa24.29■■□□□ 1.48
CPSF4-209ENST00000465132 CDCA8Q53HL2 280 aa24.29■■□□□ 1.48
CPSF4-209ENST00000465132 KTN1Q86UP2 1357 aaKnown RBP24.29■■□□□ 1.48
CPSF4-209ENST00000465132 CDCA7Q9BWT1 371 aaPredicted RBP24.28■■□□□ 1.48
CPSF4-209ENST00000465132 CARD10Q9BWT7 1032 aa24.26■■□□□ 1.47
CPSF4-209ENST00000465132 NFAT5O94916 1531 aa24.25■■□□□ 1.47
CPSF4-209ENST00000465132 PLSCR1O15162 318 aa24.25■■□□□ 1.47
CPSF4-209ENST00000465132 CSB-PGBD3P0DP91 1061 aa24.25■■□□□ 1.47
CPSF4-209ENST00000465132 TMF1P82094 1093 aa24.25■■□□□ 1.47
CPSF4-209ENST00000465132 MARCH10Q8NA82 808 aaPredicted RBP24.25■■□□□ 1.47
CPSF4-209ENST00000465132 HSPA5P11021 654 aaKnown RBP24.24■■□□□ 1.47
CPSF4-209ENST00000465132 BCL11BQ9C0K0 894 aaPredicted RBP24.24■■□□□ 1.47
CPSF4-209ENST00000465132 PTF1AQ7RTS3 328 aa24.23■■□□□ 1.47
CPSF4-209ENST00000465132 WNK3Q9BYP7 1800 aa24.22■■□□□ 1.47
CPSF4-209ENST00000465132 BCL9O00512 1426 aa24.22■■□□□ 1.47
CPSF4-209ENST00000465132 PUS7Q96PZ0 661 aaKnown RBP24.22■■□□□ 1.47
CPSF4-209ENST00000465132 USP31Q70CQ4 1352 aa24.21■■□□□ 1.47
CPSF4-209ENST00000465132 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.21■■□□□ 1.47
CPSF4-209ENST00000465132 SBF2Q86WG5 1849 aa24.21■■□□□ 1.47
CPSF4-209ENST00000465132 RGPD3A6NKT7 1758 aaPredicted RBP24.21■■□□□ 1.47
CPSF4-209ENST00000465132 RGPD4Q7Z3J3 1758 aa24.21■■□□□ 1.47
CPSF4-209ENST00000465132 RGPD5Q99666 1765 aa24.21■■□□□ 1.47
CPSF4-209ENST00000465132 MON2Q7Z3U7 1717 aa24.21■■□□□ 1.47
CPSF4-209ENST00000465132 ABCC6O95255 1503 aa24.2■■□□□ 1.47
CPSF4-209ENST00000465132 CD163L1Q9NR16 1453 aa24.19■■□□□ 1.46
CPSF4-209ENST00000465132 CCDC7Q96M83 1385 aa24.18■■□□□ 1.46
CPSF4-209ENST00000465132 NME9Q86XW9 330 aa24.18■■□□□ 1.46
CPSF4-209ENST00000465132 TESK2Q96S53 571 aa24.18■■□□□ 1.46
CPSF4-209ENST00000465132 EXOC5O00471 708 aa24.17■■□□□ 1.46
CPSF4-209ENST00000465132 TMC1Q8TDI8 760 aa24.17■■□□□ 1.46
CPSF4-209ENST00000465132 SPON1Q9HCB6 807 aa24.17■■□□□ 1.46
CPSF4-209ENST00000465132 KCNQ2O43526 872 aa24.16■■□□□ 1.46
CPSF4-209ENST00000465132 HDGFL2Q7Z4V5 671 aaPredicted RBP24.15■■□□□ 1.46
CPSF4-209ENST00000465132 PROM2Q8N271 834 aa24.15■■□□□ 1.46
CPSF4-209ENST00000465132 SLC12A5Q9H2X9 1139 aa24.15■■□□□ 1.46
CPSF4-209ENST00000465132 ANO8Q9HCE9 1232 aaPredicted RBP24.15■■□□□ 1.46
CPSF4-209ENST00000465132 USP54Q70EL1 1684 aa24.15■■□□□ 1.46
CPSF4-209ENST00000465132 ERBB3P21860 1342 aa24.13■■□□□ 1.45
CPSF4-209ENST00000465132 TNS2Q63HR2 1409 aa24.12■■□□□ 1.45
CPSF4-209ENST00000465132 EDC4Q6P2E9 1401 aaKnown RBP24.12■■□□□ 1.45
CPSF4-209ENST00000465132 PPP1R1BQ9UD71 204 aaPredicted RBP24.12■■□□□ 1.45
CPSF4-209ENST00000465132 NLRP2Q9NX02 1062 aa24.11■■□□□ 1.45
CPSF4-209ENST00000465132 TERF2IPQ9NYB0 399 aa24.11■■□□□ 1.45
CPSF4-209ENST00000465132 NINLQ9Y2I6 1382 aa24.11■■□□□ 1.45
CPSF4-209ENST00000465132 A0A1W2PP64 1363 aa24.09■■□□□ 1.45
CPSF4-209ENST00000465132 TXNRD1Q16881 649 aa24.08■■□□□ 1.45
CPSF4-209ENST00000465132 ANKRD24Q8TF21 1146 aa24.08■■□□□ 1.45
CPSF4-209ENST00000465132 PDGFDQ9GZP0 370 aaPredicted RBP24.07■■□□□ 1.44
CPSF4-209ENST00000465132 CASZ1Q86V15 1759 aa24.06■■□□□ 1.44
CPSF4-209ENST00000465132 IL2RBP14784 551 aa24.06■■□□□ 1.44
CPSF4-209ENST00000465132 LTN1O94822 1766 aa24.06■■□□□ 1.44
CPSF4-209ENST00000465132 STK32BQ9NY57 414 aa24.04■■□□□ 1.44
CPSF4-209ENST00000465132 ACSBG1Q96GR2 724 aa24.03■■□□□ 1.44
CPSF4-209ENST00000465132 NHSQ6T4R5 1651 aa24.02■■□□□ 1.44
CPSF4-209ENST00000465132 ZBTB7AO95365 584 aa24.02■■□□□ 1.44
CPSF4-209ENST00000465132 SLC15A2Q16348 729 aa24.02■■□□□ 1.44
CPSF4-209ENST00000465132 IP6K1Q92551 441 aa24.01■■□□□ 1.43
CPSF4-209ENST00000465132 POLR3GLQ9BT43 218 aa23.99■■□□□ 1.43
CPSF4-209ENST00000465132 PTGER2P43116 358 aa23.98■■□□□ 1.43
CPSF4-209ENST00000465132 DCAF8L1A6NGE4 600 aa23.97■■□□□ 1.43
CPSF4-209ENST00000465132 YY1P25490 414 aa23.97■■□□□ 1.43
CPSF4-209ENST00000465132 ATF5Q9Y2D1 282 aaPredicted RBP23.97■■□□□ 1.43
CPSF4-209ENST00000465132 LTV1Q96GA3 475 aaPredicted RBP23.96■■□□□ 1.43
CPSF4-209ENST00000465132 COG3Q96JB2 828 aa23.96■■□□□ 1.43
CPSF4-209ENST00000465132 KIF7Q2M1P5 1343 aa23.95■■□□□ 1.42
CPSF4-209ENST00000465132 MAP3K19Q56UN5 1328 aa23.94■■□□□ 1.42
CPSF4-209ENST00000465132 ZNF316A6NFI3 1004 aaPredicted RBP23.94■■□□□ 1.42
CPSF4-209ENST00000465132 MTFR1LQ9H019 292 aa23.93■■□□□ 1.42
CPSF4-209ENST00000465132 HOXC9P31274 260 aa23.92■■□□□ 1.42
CPSF4-209ENST00000465132 DDX54Q8TDD1 881 aaKnown RBP23.92■■□□□ 1.42
CPSF4-209ENST00000465132 MYOM1P52179 1685 aa23.92■■□□□ 1.42
CPSF4-209ENST00000465132 PAPPAQ13219 1627 aa23.92■■□□□ 1.42
CPSF4-209ENST00000465132 ANKRD36BQ8N2N9 1353 aa23.91■■□□□ 1.42
CPSF4-209ENST00000465132 BTAF1O14981 1849 aa23.91■■□□□ 1.42
CPSF4-209ENST00000465132 FBLN1P23142 703 aa23.91■■□□□ 1.42
CPSF4-209ENST00000465132 AMPHP49418 695 aa23.91■■□□□ 1.42
CPSF4-209ENST00000465132 FAM208AQ9UK61 1670 aaKnown RBP23.91■■□□□ 1.42
CPSF4-209ENST00000465132 SGIP1Q9BQI5 828 aa23.9■■□□□ 1.42
CPSF4-209ENST00000465132 WASHC2AQ641Q2 1341 aa23.89■■□□□ 1.42
CPSF4-209ENST00000465132 LRRC4BQ9NT99 713 aa23.89■■□□□ 1.41
CPSF4-209ENST00000465132 ZNF827Q17R98 1081 aa23.87■■□□□ 1.41
CPSF4-209ENST00000465132 FHDC1Q9C0D6 1143 aaPredicted RBP23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms