RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 LMO7Q8WWI1 1683 aa23.54■■□□□ 1.36
VPS52-215ENST00000464425 NFAT5O94916 1531 aa23.54■■□□□ 1.36
VPS52-215ENST00000464425 ONECUT3O60422 494 aaPredicted RBP23.54■■□□□ 1.36
VPS52-215ENST00000464425 NSD3Q9BZ95 1437 aa23.53■■□□□ 1.36
VPS52-215ENST00000464425 FBLN1P23142 703 aa23.53■■□□□ 1.36
VPS52-215ENST00000464425 PANK3Q9H999 370 aa23.53■■□□□ 1.36
VPS52-215ENST00000464425 COL5A2P05997 1499 aaPredicted RBP23.52■■□□□ 1.36
VPS52-215ENST00000464425 KIF7Q2M1P5 1343 aa23.51■■□□□ 1.35
VPS52-215ENST00000464425 USP54Q70EL1 1684 aa23.51■■□□□ 1.35
VPS52-215ENST00000464425 COL18A1P39060 1754 aa23.5■■□□□ 1.35
VPS52-215ENST00000464425 CSB-PGBD3P0DP91 1061 aa23.49■■□□□ 1.35
VPS52-215ENST00000464425 TOM1L2Q6ZVM7 507 aa23.49■■□□□ 1.35
VPS52-215ENST00000464425 UPF1Q92900 1129 aaKnown RBP eCLIP23.49■■□□□ 1.35
VPS52-215ENST00000464425 TCP11L2Q8N4U5 519 aa23.48■■□□□ 1.35
VPS52-215ENST00000464425 CGNL1Q0VF96 1302 aa23.46■■□□□ 1.35
VPS52-215ENST00000464425 KRT27Q7Z3Y8 459 aa23.46■■□□□ 1.35
VPS52-215ENST00000464425 CRB1P82279 1406 aa23.45■■□□□ 1.34
VPS52-215ENST00000464425 WDR17Q8IZU2 1322 aa23.45■■□□□ 1.34
VPS52-215ENST00000464425 BARGINQ6ZT62 677 aa23.45■■□□□ 1.34
VPS52-215ENST00000464425 MAP3K19Q56UN5 1328 aa23.44■■□□□ 1.34
VPS52-215ENST00000464425 RRS1Q15050 365 aaKnown RBP23.44■■□□□ 1.34
VPS52-215ENST00000464425 RGPD5Q99666 1765 aa23.43■■□□□ 1.34
VPS52-215ENST00000464425 AMPHP49418 695 aa23.43■■□□□ 1.34
VPS52-215ENST00000464425 IP6K1Q92551 441 aa23.43■■□□□ 1.34
VPS52-215ENST00000464425 THRAP3Q9Y2W1 955 aaKnown RBP23.42■■□□□ 1.34
VPS52-215ENST00000464425 BRWD3Q6RI45 1802 aa23.42■■□□□ 1.34
VPS52-215ENST00000464425 LTN1O94822 1766 aa23.42■■□□□ 1.34
VPS52-215ENST00000464425 KIF20BQ96Q89 1820 aa23.41■■□□□ 1.34
VPS52-215ENST00000464425 ANKRD24Q8TF21 1146 aa23.41■■□□□ 1.34
VPS52-215ENST00000464425 LTV1Q96GA3 475 aaPredicted RBP23.41■■□□□ 1.34
VPS52-215ENST00000464425 FAM182BQ5T319 152 aa23.4■■□□□ 1.34
VPS52-215ENST00000464425 CARD10Q9BWT7 1032 aa23.4■■□□□ 1.34
VPS52-215ENST00000464425 NLRP2Q9NX02 1062 aa23.4■■□□□ 1.34
VPS52-215ENST00000464425 ABCC6O95255 1503 aa23.39■■□□□ 1.34
VPS52-215ENST00000464425 ERBB3P21860 1342 aa23.39■■□□□ 1.34
VPS52-215ENST00000464425 WASHC2AQ641Q2 1341 aa23.39■■□□□ 1.34
VPS52-215ENST00000464425 HOXC9P31274 260 aa23.39■■□□□ 1.33
VPS52-215ENST00000464425 CCDC7Q96M83 1385 aa23.39■■□□□ 1.33
VPS52-215ENST00000464425 KNSTRNQ9Y448 316 aa23.38■■□□□ 1.33
VPS52-215ENST00000464425 THSD7AQ9UPZ6 1657 aa23.38■■□□□ 1.33
VPS52-215ENST00000464425 TNNT2P45379 298 aaPredicted RBP23.37■■□□□ 1.33
VPS52-215ENST00000464425 BLMP54132 1417 aaPredicted RBP23.36■■□□□ 1.33
VPS52-215ENST00000464425 PDE3BQ13370 1112 aa23.36■■□□□ 1.33
VPS52-215ENST00000464425 EP400Q96L91 3159 aa23.36■■□□□ 1.33
VPS52-215ENST00000464425 PPM1GO15355 546 aaPredicted RBP23.34■■□□□ 1.33
VPS52-215ENST00000464425 EMILIN1Q9Y6C2 1016 aa23.34■■□□□ 1.33
VPS52-215ENST00000464425 HSP90AB2PQ58FF8 381 aa23.33■■□□□ 1.33
VPS52-215ENST00000464425 RTL1A6NKG5 1358 aa23.31■■□□□ 1.32
VPS52-215ENST00000464425 CDCA7Q9BWT1 371 aaPredicted RBP23.31■■□□□ 1.32
VPS52-215ENST00000464425 DDB1Q16531 1140 aa23.3■■□□□ 1.32
VPS52-215ENST00000464425 MORC1Q86VD1 984 aa23.3■■□□□ 1.32
VPS52-215ENST00000464425 CCDC125Q86Z20 511 aa23.3■■□□□ 1.32
VPS52-215ENST00000464425 NSD2O96028 1365 aa23.29■■□□□ 1.32
VPS52-215ENST00000464425 PER1O15534 1290 aaPredicted RBP23.29■■□□□ 1.32
VPS52-215ENST00000464425 AMER1Q5JTC6 1135 aaPredicted RBP23.29■■□□□ 1.32
VPS52-215ENST00000464425 FLT4P35916 1363 aa23.28■■□□□ 1.32
VPS52-215ENST00000464425 POLKQ9UBT6 870 aa23.28■■□□□ 1.32
VPS52-215ENST00000464425 FAM196AQ6ZSG2 479 aa23.27■■□□□ 1.32
VPS52-215ENST00000464425 PEAK1Q9H792 1746 aa23.26■■□□□ 1.31
VPS52-215ENST00000464425 EXOC5O00471 708 aa23.26■■□□□ 1.31
VPS52-215ENST00000464425 IL2RBP14784 551 aa23.26■■□□□ 1.31
VPS52-215ENST00000464425 CNGB1Q14028 1251 aaPredicted RBP23.26■■□□□ 1.31
VPS52-215ENST00000464425 INSRP06213 1382 aa23.26■■□□□ 1.31
VPS52-215ENST00000464425 KIF24Q5T7B8 1368 aa23.26■■□□□ 1.31
VPS52-215ENST00000464425 DISP2A7MBM2 1401 aa23.25■■□□□ 1.31
VPS52-215ENST00000464425 SF3B2Q13435 895 aaKnown RBP23.25■■□□□ 1.31
VPS52-215ENST00000464425 CC2D1BQ5T0F9 858 aaKnown RBP23.25■■□□□ 1.31
VPS52-215ENST00000464425 NBPF6Q5VWK0 638 aa23.25■■□□□ 1.31
VPS52-215ENST00000464425 NBPF4Q96M43 638 aa23.25■■□□□ 1.31
VPS52-215ENST00000464425 USHBP1Q8N6Y0 703 aa23.24■■□□□ 1.31
VPS52-215ENST00000464425 PARP4Q9UKK3 1724 aaKnown RBP23.24■■□□□ 1.31
VPS52-215ENST00000464425 ANKRD26Q9UPS8 1709 aa23.23■■□□□ 1.31
VPS52-215ENST00000464425 TRIM37O94972 964 aa23.23■■□□□ 1.31
VPS52-215ENST00000464425 SMG6Q86US8 1419 aaKnown RBP23.23■■□□□ 1.31
VPS52-215ENST00000464425 MAP2P11137 1827 aaKnown RBP23.22■■□□□ 1.31
VPS52-215ENST00000464425 DEFB132Q7Z7B7 95 aa23.22■■□□□ 1.31
VPS52-215ENST00000464425 MARCH10Q8NA82 808 aaPredicted RBP23.22■■□□□ 1.31
VPS52-215ENST00000464425 LRRC37A3O60309 1634 aa23.21■■□□□ 1.31
VPS52-215ENST00000464425 WNK3Q9BYP7 1800 aa23.2■■□□□ 1.3
VPS52-215ENST00000464425 RGPD2P0DJD1 1756 aa23.19■■□□□ 1.3
VPS52-215ENST00000464425 FAM208AQ9UK61 1670 aaKnown RBP23.17■■□□□ 1.3
VPS52-215ENST00000464425 OVOS2A0A0G2JMS6 1433 aa23.16■■□□□ 1.3
VPS52-215ENST00000464425 TNS2Q63HR2 1409 aa23.16■■□□□ 1.3
VPS52-215ENST00000464425 ZNF316A6NFI3 1004 aaPredicted RBP23.15■■□□□ 1.3
VPS52-215ENST00000464425 BAG6P46379 1132 aa23.15■■□□□ 1.3
VPS52-215ENST00000464425 EIF4A2Q14240 407 aaKnown RBP23.15■■□□□ 1.3
VPS52-215ENST00000464425 DDX54Q8TDD1 881 aaKnown RBP23.15■■□□□ 1.3
VPS52-215ENST00000464425 EN1Q05925 392 aaPredicted RBP23.14■■□□□ 1.29
VPS52-215ENST00000464425 RAPGEF4Q8WZA2 1011 aa23.14■■□□□ 1.29
VPS52-215ENST00000464425 EYA1Q99502 592 aa23.14■■□□□ 1.29
VPS52-215ENST00000464425 APBA3O96018 575 aa23.13■■□□□ 1.29
VPS52-215ENST00000464425 MEGF6O75095 1541 aa23.13■■□□□ 1.29
VPS52-215ENST00000464425 ZCRB1Q8TBF4 217 aaKnown RBP23.12■■□□□ 1.29
VPS52-215ENST00000464425 NPC1L1Q9UHC9 1359 aa23.12■■□□□ 1.29
VPS52-215ENST00000464425 TATP17735 454 aaPredicted RBP23.11■■□□□ 1.29
VPS52-215ENST00000464425 MTHFSP49914 203 aa23.11■■□□□ 1.29
VPS52-215ENST00000464425 PTF1AQ7RTS3 328 aa23.11■■□□□ 1.29
VPS52-215ENST00000464425 RGPD1P0DJD0 1748 aa23.1■■□□□ 1.29
VPS52-215ENST00000464425 ACSBG1Q96GR2 724 aa23.09■■□□□ 1.29
VPS52-215ENST00000464425 BCL11BQ9C0K0 894 aaPredicted RBP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms