RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 AXIN2Q9Y2T1 843 aa20.93■□□□□ 0.94
SMC1A-204ENST00000463684 USP6P35125 1406 aa20.93■□□□□ 0.94
SMC1A-204ENST00000463684 PEAK1Q9H792 1746 aa20.92■□□□□ 0.94
SMC1A-204ENST00000463684 CSB-PGBD3P0DP91 1061 aa20.92■□□□□ 0.94
SMC1A-204ENST00000463684 EXOC5O00471 708 aa20.91■□□□□ 0.94
SMC1A-204ENST00000463684 TXNRD1Q16881 649 aa20.91■□□□□ 0.94
SMC1A-204ENST00000463684 KCNH5Q8NCM2 988 aa20.91■□□□□ 0.94
SMC1A-204ENST00000463684 KIAA1210Q9ULL0 1709 aa20.91■□□□□ 0.94
SMC1A-204ENST00000463684 RGPD3A6NKT7 1758 aaPredicted RBP20.9■□□□□ 0.94
SMC1A-204ENST00000463684 RGPD4Q7Z3J3 1758 aa20.9■□□□□ 0.94
SMC1A-204ENST00000463684 BCL9O00512 1426 aa20.9■□□□□ 0.94
SMC1A-204ENST00000463684 LRRC37A3O60309 1634 aa20.89■□□□□ 0.94
SMC1A-204ENST00000463684 SLIT3O75094 1523 aa20.89■□□□□ 0.94
SMC1A-204ENST00000463684 PTGER2P43116 358 aa20.89■□□□□ 0.93
SMC1A-204ENST00000463684 SLC15A2Q16348 729 aa20.89■□□□□ 0.93
SMC1A-204ENST00000463684 ARHGEF25Q86VW2 580 aa20.89■□□□□ 0.93
SMC1A-204ENST00000463684 CARD10Q9BWT7 1032 aa20.89■□□□□ 0.93
SMC1A-204ENST00000463684 ZNF692Q9BU19 519 aaPredicted RBP20.88■□□□□ 0.93
SMC1A-204ENST00000463684 EVC2Q86UK5 1308 aa20.87■□□□□ 0.93
SMC1A-204ENST00000463684 SOX12O15370 315 aa20.87■□□□□ 0.93
SMC1A-204ENST00000463684 ZNF784Q8NCA9 323 aaPredicted RBP20.87■□□□□ 0.93
SMC1A-204ENST00000463684 SYT17Q9BSW7 474 aa20.87■□□□□ 0.93
SMC1A-204ENST00000463684 SBF2Q86WG5 1849 aa20.86■□□□□ 0.93
SMC1A-204ENST00000463684 FHDC1Q9C0D6 1143 aaPredicted RBP20.86■□□□□ 0.93
SMC1A-204ENST00000463684 MTFR1LQ9H019 292 aa20.86■□□□□ 0.93
SMC1A-204ENST00000463684 CPSF1Q10570 1443 aaKnown RBP20.86■□□□□ 0.93
SMC1A-204ENST00000463684 CASZ1Q86V15 1759 aa20.85■□□□□ 0.93
SMC1A-204ENST00000463684 TTC21BQ7Z4L5 1316 aa20.84■□□□□ 0.93
SMC1A-204ENST00000463684 CCDC7Q96M83 1385 aa20.82■□□□□ 0.92
SMC1A-204ENST00000463684 COL18A1P39060 1754 aa20.82■□□□□ 0.92
SMC1A-204ENST00000463684 TTC21AQ8NDW8 1320 aa20.81■□□□□ 0.92
SMC1A-204ENST00000463684 PIK3C2AO00443 1686 aa20.8■□□□□ 0.92
SMC1A-204ENST00000463684 MYOM1P52179 1685 aa20.8■□□□□ 0.92
SMC1A-204ENST00000463684 QRICH2Q9H0J4 1663 aa20.8■□□□□ 0.92
SMC1A-204ENST00000463684 ACSBG1Q96GR2 724 aa20.79■□□□□ 0.92
SMC1A-204ENST00000463684 ARXQ96QS3 562 aa20.79■□□□□ 0.92
SMC1A-204ENST00000463684 SGIP1Q9BQI5 828 aa20.78■□□□□ 0.92
SMC1A-204ENST00000463684 AKAP12Q02952 1782 aa20.77■□□□□ 0.92
SMC1A-204ENST00000463684 NLRP2Q9NX02 1062 aa20.76■□□□□ 0.91
SMC1A-204ENST00000463684 TNS2Q63HR2 1409 aa20.76■□□□□ 0.91
SMC1A-204ENST00000463684 WNK3Q9BYP7 1800 aa20.76■□□□□ 0.91
SMC1A-204ENST00000463684 KTN1Q86UP2 1357 aaKnown RBP20.75■□□□□ 0.91
SMC1A-204ENST00000463684 SENP3-EIF4A1A0A087X0R7 540 aa20.75■□□□□ 0.91
SMC1A-204ENST00000463684 IL2RBP14784 551 aa20.74■□□□□ 0.91
SMC1A-204ENST00000463684 L3MBTL2Q969R5 705 aa20.74■□□□□ 0.91
SMC1A-204ENST00000463684 UTRNP46939 3433 aa20.74■□□□□ 0.91
SMC1A-204ENST00000463684 C1QTNF8P60827 252 aa20.73■□□□□ 0.91
SMC1A-204ENST00000463684 GPR162Q16538 588 aa20.73■□□□□ 0.91
SMC1A-204ENST00000463684 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.72■□□□□ 0.91
SMC1A-204ENST00000463684 TRPM1Q7Z4N2 1603 aa20.71■□□□□ 0.91
SMC1A-204ENST00000463684 RGPD5Q99666 1765 aa20.7■□□□□ 0.9
SMC1A-204ENST00000463684 NFAT5O94916 1531 aa20.7■□□□□ 0.9
SMC1A-204ENST00000463684 ERBB3P21860 1342 aa20.7■□□□□ 0.9
SMC1A-204ENST00000463684 MAP3K5Q99683 1374 aa20.7■□□□□ 0.9
SMC1A-204ENST00000463684 ABCC6O95255 1503 aa20.69■□□□□ 0.9
SMC1A-204ENST00000463684 ZNF827Q17R98 1081 aa20.69■□□□□ 0.9
SMC1A-204ENST00000463684 ROCK2O75116 1388 aaKnown RBP20.69■□□□□ 0.9
SMC1A-204ENST00000463684 POLD1P28340 1107 aa20.68■□□□□ 0.9
SMC1A-204ENST00000463684 ANKRD24Q8TF21 1146 aa20.68■□□□□ 0.9
SMC1A-204ENST00000463684 SLC16A10Q8TF71 515 aa20.68■□□□□ 0.9
SMC1A-204ENST00000463684 NHSQ6T4R5 1651 aa20.67■□□□□ 0.9
SMC1A-204ENST00000463684 KLHL34Q8N239 644 aa20.67■□□□□ 0.9
SMC1A-204ENST00000463684 LRRC4BQ9NT99 713 aa20.67■□□□□ 0.9
SMC1A-204ENST00000463684 USP31Q70CQ4 1352 aa20.66■□□□□ 0.9
SMC1A-204ENST00000463684 SLC27A3Q5K4L6 730 aa20.65■□□□□ 0.9
SMC1A-204ENST00000463684 NME9Q86XW9 330 aa20.65■□□□□ 0.9
SMC1A-204ENST00000463684 PELP1Q8IZL8 1130 aaKnown RBP20.65■□□□□ 0.9
SMC1A-204ENST00000463684 AKT1S1Q96B36 256 aa20.64■□□□□ 0.89
SMC1A-204ENST00000463684 HDGFL2Q7Z4V5 671 aaPredicted RBP20.63■□□□□ 0.89
SMC1A-204ENST00000463684 DDX54Q8TDD1 881 aaKnown RBP20.63■□□□□ 0.89
SMC1A-204ENST00000463684 TMC1Q8TDI8 760 aa20.63■□□□□ 0.89
SMC1A-204ENST00000463684 TFCP2L1Q9NZI6 479 aa20.63■□□□□ 0.89
SMC1A-204ENST00000463684 GIGYF1O75420 1035 aaPredicted RBP20.62■□□□□ 0.89
SMC1A-204ENST00000463684 PAPPAQ13219 1627 aa20.62■□□□□ 0.89
SMC1A-204ENST00000463684 CHD4Q14839 1912 aa20.62■□□□□ 0.89
SMC1A-204ENST00000463684 NEUROD1Q13562 356 aa20.6■□□□□ 0.89
SMC1A-204ENST00000463684 SYTL4Q96C24 671 aaPredicted RBP20.6■□□□□ 0.89
SMC1A-204ENST00000463684 SIN3AQ96ST3 1273 aa20.6■□□□□ 0.89
SMC1A-204ENST00000463684 SBNO2Q9Y2G9 1366 aa20.59■□□□□ 0.89
SMC1A-204ENST00000463684 PNPLA7Q6ZV29 1317 aa20.58■□□□□ 0.89
SMC1A-204ENST00000463684 BTAF1O14981 1849 aa20.58■□□□□ 0.89
SMC1A-204ENST00000463684 PRIM1P49642 420 aaKnown RBP20.57■□□□□ 0.88
SMC1A-204ENST00000463684 IP6K1Q92551 441 aa20.57■□□□□ 0.88
SMC1A-204ENST00000463684 LTV1Q96GA3 475 aaPredicted RBP20.57■□□□□ 0.88
SMC1A-204ENST00000463684 SLC12A5Q9H2X9 1139 aa20.57■□□□□ 0.88
SMC1A-204ENST00000463684 TERF2IPQ9NYB0 399 aa20.57■□□□□ 0.88
SMC1A-204ENST00000463684 GRIN3BO60391 1043 aa20.55■□□□□ 0.88
SMC1A-204ENST00000463684 KCNQ4P56696 695 aa20.55■□□□□ 0.88
SMC1A-204ENST00000463684 MON2Q7Z3U7 1717 aa20.55■□□□□ 0.88
SMC1A-204ENST00000463684 EDC4Q6P2E9 1401 aaKnown RBP20.54■□□□□ 0.88
SMC1A-204ENST00000463684 MSH5O43196 834 aa20.54■□□□□ 0.88
SMC1A-204ENST00000463684 NLGN2Q8NFZ4 835 aa20.54■□□□□ 0.88
SMC1A-204ENST00000463684 CD163L1Q9NR16 1453 aa20.54■□□□□ 0.88
SMC1A-204ENST00000463684 CARD11Q9BXL7 1154 aa20.53■□□□□ 0.88
SMC1A-204ENST00000463684 ANKRD36BQ8N2N9 1353 aa20.52■□□□□ 0.88
SMC1A-204ENST00000463684 ZCRB1Q8TBF4 217 aaKnown RBP20.52■□□□□ 0.88
SMC1A-204ENST00000463684 LTN1O94822 1766 aa20.51■□□□□ 0.87
SMC1A-204ENST00000463684 USP54Q70EL1 1684 aa20.51■□□□□ 0.87
SMC1A-204ENST00000463684 KAT6BQ8WYB5 2073 aa20.51■□□□□ 0.87
SMC1A-204ENST00000463684 CCNL1Q9UK58 526 aaPredicted RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 143.6 ms